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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1426.1 vs. uniprot
Match: A0A6H5KVA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVA6_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.280e-51 Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = 2
Query: 2 SAFEYMTVNQAVKEGYMYPPEDSWESDEVASDSDEEGLPRKVYVEANKNGPLRSKTRWGRRNGKPYYPDWYTQFEYEPVDVPSTEDAEIQEG 277
SAFEYMT+NQAVKE MYPPEDSWESDE+ASDS+EEGLPR+VY A KNGPLRSKTRWGRRNGKPYYPDWYT+ YEPVDVP TEDAEIQEG
Sbjct: 60 SAFEYMTINQAVKEACMYPPEDSWESDEIASDSEEEGLPRRVYAPAYKNGPLRSKTRWGRRNGKPYYPDWYTESMYEPVDVPFTEDAEIQEG 151
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 261 |
| Model size | 279 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927744.948564-UTR-E-siliculosus-1a_F_contig1226:25167..25183 | 1622927744.948564-UTR-E-siliculosus-1a_F_contig1226:25167..25183 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1226 25168..25183 + |
| 1696318664.1508245-UTR-E-siliculosus-1a_F_contig1226:25167..25183 | 1696318664.1508245-UTR-E-siliculosus-1a_F_contig1226:25167..25183 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1226 25168..25183 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1226.1426.1 >prot_E-siliculosus-1a_F_contig1226.1426.1 ID=prot_E-siliculosus-1a_F_contig1226.1426.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
MTVNQAVKEGYMYPPEDSWESDEVASDSDEEGLPRKVYVEANKNGPLRSK
TRWGRRNGKPYYPDWYTQFEYEPVDVPSTEDAEIQEG back to topmRNA from alignment at E-siliculosus-1a_F_contig1226:25168..29085+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1226.1426.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1426.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3918bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:25168..29085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAGCTTTCGAGTACATGACCGTGAACCAGGCGGTCAAGGAAGGGTACA
TGTACCCCCCTGAGGTTAGTCGTGCTACGTGAAGGTTGTAAGGTTACCTA
CAGCGATGTTTCTGGTCTCCTCGTTGAACACGAGTGGTCGCAAGGCAGAA
AGAAGGGTATGGAAACTAGGACTGATATGGTCACGCACAGGTTCAATACA
ACAAGCGCACATTGTTGTGCAATTCATCATACCTACTGTTGTAGCGAAGA
CATGCTACCGTGAAAACTTCTGCGTCCATGCTCGTGTGCATACGGGGGTA
ACACAGGTAGCCTGGCAGGAACATATGCGAAAGGGCAAGCGACCCATCGT
TACACAGCATGACTAACCTCAGGGGGGTACACGTACCCTTCCTTAACAGC
CTGGTTCACGTTCATGTACTCGAACGGAGTACACGACGCAGTGGGAGTGA
CAGCGGCCGAAGCAATAATCGAATTACTGCTTCGGCCGCTGTTGCTCCCG
CTGCGCCTCCTACCTCGCCTTTCGATTACATGAACGTTAACCTGGCTGTA
AAAGAGGGCTACGTCTACCCTCCCGAGGTCGGTGTTACCTACAGCGACGT
TTCTGGTCTTCTCGTCGAAGACGTGGTCGCGTGCCCTTTCGCGCACTTGG
CTGCAAGGAAACGTGTGTTGCCCCCGTATGCACTCGAGGATGAACGCAAG
GTTCACGGTGAACTCCCGCATGTCTTCGCCACGAAAGTAGGTCTGATGAA
GTGCAAAGCTCAGCGTAAATCGGGGTGCTTGTTGTATTGAATCTTTGCGT
GAGGAAATCAATCCTCGTTTTGGCACCCGTCTGCCCTTCTTTTCAGATTG
GTGCTGTAGTAATCTGTGGCGGACGCTCTATCGTGGTATGTACCAAGGAC
GGCAGTGTATGTTTCTCCTGAAAACGACTGTATTGAGCTTTTTGCAAGAA
CGGGACCCATCTTCCCAACGCCTCTCAGGCCGTTCGAAACTTTCACTGAT
GAGTTGCTGATAAAACGAGGGAAGTCAAATAAATGCCCGTGCCATGTGTT
TCCTGAACCCATGCTCGGAAGTACTCCTGGTACCTGTCCGGTACACTTGG
TATGTATGCGGCTGGCAAGCTGTTGGTCCGCGAGATCCGCGTTCAGTGTT
CAAAAATGAGAAGTCCTCACCGAACCTGACCAGCGACGCGCCTGTTGGAG
CTGTTGGGTGTGCGATGTTTTCTGTCTGTCTTCTTGTGTTGATGTATGTT
TCTTTCATACATACATACATACATACATACATACATACATACATGTTTTT
GTTGGTGGCGGTGGTGAGACTTCGACGATGTAGCCGCTGCTGCGAACGTC
GCCCTTCACCTTTCGAACAGGAATCATGGGAGTCGGACGAAGCTACTTCT
GGCAGCGATGAGGAGGGCCTTCTGCGTAAGGTGTACGTTGCGGCGTACAA
AATTGGTCCACAGCGATCAAAGACGTAGTTTTGATCGCAACGGTCCGTTC
TTGTACGCCTCAACGTACACCTTGGGGGGAAGGCCCTCCTCGTCGCTGCC
AGAGGCGACTTTGTCCGACTCCCACGAGTCCTATCGAAAAGGTGAAGGGC
AACGTTCGCAGCAGGGGCTGAATACATCATCGATAATAGCACCAACAACA
TCAACAGGAACGTAAAGAAACCTATATCAAACAACATGAGCGTCATCAAC
AAGACAGACAACATCTCACCAATAAGCAACCAAGAACTCCAACAAAGGGG
CGACGCTGGCCAGCTTTGGTGAGGATACTTGTGCCACGATTCGACCTTCT
CTAAACTTAACCCCTTGCCCATACACACACCGCACGCGGGTCTCGAGAAC
GAGCATCTCAAAGAGCCAAGGAAAGAGAAGGTCGAATCGTGATATAACTC
CTCACCGAGGCTGACCAGCGACGCGCCTGTTGTTGGAGCTGTTGGTTGTT
GTTTTACGAAGTTGTCTACCCATCTGTCTTCTGTCTGTCCACCTGTTGTT
GCTGATCTTGTGTTGTTTCATGTATGTTTCTTTCATACAGATGCTATATG
TTTCTGTTGTTGTTGGTGAGTATCGCTGCTGCCAACGTTGCCTGTCGCCT
TTGGATAGGGCTCTTGAGAGTCCGATTAAGTCGCTTCCGATAGCGTCGCT
TCCGATAGCGACGAGGAGGGTCTGCCGAAAAAGGTTTTCGTGGAGGCCTA
CAAGAACGGACCCCTGAGGTCCAAGGTGAAGGTGAGTAGTAGCCTACTAC
TCACCCTCGTCTTGGACCTCAGGGGTCCATTCTTACAGGCCTCGACGGAA
ACCTTCTTTGGGAGACGCTCCTTATCGCTGTCGGAAGCGACTTCATCTGA
TACCTACGAGTCCTATCCGAAGGTCAAGGGCAACGTTGGCAGCAGCGACC
ACATCATCGACAAAAAAACACCACCAACATCAACAGGAACGTATGGAAAT
TTGTTGTTGCCGATATTGTCTGTCTGTCTGTCTGATATGTCGTGTCTGTC
TGTCGACCTGTTGTTGCCGATATTGTGTTGTTTGGTGTATGTCTTTCATT
CCTACATGTTTCTGCTCTTGGTGGTGAGTAGTCGCTACTGCCAACGTTGC
CCTTCACCTTTTGGATATAGGACTCGTGGGAGTCCGACGAGGTTGCCTCG
GATAGCGACGAGGAGGGCCTTCCCCGGAAGGTGTACGTGGCAGCGTACAA
GAATAAACCCCTGAGGTCCAAGACAAGGTTCCTTGTCTTGGACCGGAGGG
GTCCGTTCTTGTACGCCTCGACGTACACCTTCCGGGGAAGGCCCTCCTCG
TCGCTATCCGAGGCGACCTCGTCGGACTCCCACGAGTCCTATATCCAAAA
GGTGAAGGGCAACGTTGGCAGCAGCGACCACATCATCGACAACAACACCA
ACAACATCAATGGGGACAGGAACGTATGGAATAACCATGTGTTGTGTTAA
TTAGATGTCGTCTGTCTGTCTGTCTTGTGTCGTTAAATGTTCTTTTGCTT
TTTATGTTTCTTGGATAGATGTGCGCATATCTGTGGCTGATGTTGTTGGT
GCTATTGTCAACTATGTGGTCGCTGCTGCCAACGTTGCCATTCACCTTTT
GGATATAGGACTCGTGGGAGTCCGACGAGGTCGCCTCGGACAGCGACGAG
GAGGGCCTTCCCCGGAAGGTGTACGTCGAGGCGAACAAGAACGGACCCCT
CCGGTCCAAGACACGGGTGAGTAGGTTGAGCCGCATGCCTGGTGCTGTGT
TCACGCACTCTTGTCGAAGTTTTTCGCACCAAGCTCTCTCTCCTCATCCC
GTATCGACAATGAATACTGTGTTGAGAGATGTTGTGTTTTCGTCACAGCG
GTGCAAGGCAGGAACGACATTTTAGGCCCAAACACATCGCAGTACACACA
TACCAAATATTTATGCATGTGTCACCACTGTGTTGGGTCCCATTTTTCGA
TGACCACAGCAAGAAGTTAACATACTACGAATTGTGCTAATCGGGGCCAA
GTTCTCAGGCGATATTGTATATCTAAATATTCAAGAGCTGTACATGTAGA
GTTAGCATCTTCCCTCTCAACAGCAGGAGAACAATAGCCCCTGGTACAAA
CTTATTTTGGTGGAGCTGATGTATTTGCATGATGCGTCCAATACTGCAAA
GCATCTCTTCACATGCAAACACCCGTAGTTCATCTCGATCTCCACGCGTC
GTACCGTATGCATCTTCGTGTCCACGTCTTTGTCGTCCCAACGTTTCCAT
TTTCCCTCTAACATCGAATTTACCCTTCTTTCTTTCTGGCCGGCGCACTT
TGGTTTCATATAGTGGGGGAGGAGGAACGGCAAGCCGTATTACCCGGACT
GGTACACTCAGTTCGAGTATGAACCGGTGGACGTTCCGAGCACGGAAGAT
GCAGAGATTCAGGAGGGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1226:25168..29085+ >mRNA_E-siliculosus-1a_F_contig1226.1426.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1426.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:25168..29085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCGTGAACCAGGCGGTCAAGGAAGGGTACATGTACCCCCCTGAGAT
GACCGTGAACCAGGCGGTCAAGGAAGGGTACATGTACCCCCCTGAGGACT
CGTGGGAGTCCGACGAGGTCGCCTCGGACAGCGACGAGGAGGGCCTTCCC
CGGAAGGTGTACGTCGAGGCGAACAAGAACGGACCCCTCCGGTCCAAGAC
ACGGGACTCGTGGGAGTCCGACGAGGTCGCCTCGGACAGCGACGAGGAGG
GCCTTCCCCGGAAGGTGTACGTCGAGGCGAACAAGAACGGACCCCTCCGG
TCCAAGACACGGTGGGGGAGGAGGAACGGCAAGCCGTATTACCCGGACTG
GTACACTCAGTTCGAGTATGAACCGGTGGACGTTCCGAGCACGGAAGATG
CAGAGATTCAGGAGGGCTGGGGGAGGAGGAACGGCAAGCCGTATTACCCG
GACTGGTACACTCAGTTCGAGTATGAACCGGTGGACGTTCCGAGCACGGA
AGATGCAGAGATTCAGGAGGGC back to top
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