mRNA_E-siliculosus-1a_F_contig1226.1425.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI) HSP 1 Score: 576 bits (1485), Expect = 7.970e-199 Identity = 287/296 (96.96%), Postives = 291/296 (98.31%), Query Frame = 1
Query: 1 TLSFCSYQVHITMKFTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDALKAAATSAAAAGFVFSNSFPAFADGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 888
TLS+CSYQVH+TMKFTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDALKAAA SAAAAGFVFSNSFPAFADGPY LPDLPY Y+ALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLL+LQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPS LAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG
Sbjct: 5 TLSYCSYQVHVTMKFTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDALKAAAASAAAAGFVFSNSFPAFADGPYNLPDLPYSYDALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLDLQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSGTLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 300
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA) HSP 1 Score: 352 bits (904), Expect = 4.560e-112 Identity = 178/244 (72.95%), Postives = 194/244 (79.51%), Query Frame = 1
Query: 163 GSLSRGDALKAAATSAAAAGFVF-SNSFPAFA-DGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 888
G +SR A++ A + A G F +NS PA A DGPY LPDLPY YEALEP+IDAATMKFHHDKHH AY+ NANKA+AGK A S+L+LQK AIK GVRNAGGGHYNH LFW TL SG PSA L AID +FGS D MK +FG AAGVFGSGWAWLG T DGKL IT TPNQDNPLMEGAA TAM+PILGLDVWEHAYYLKYQNRRPEYI+AFWNVVNWA VSE YE YA + +GVPVQG
Sbjct: 32 GGVSRRQAIQTGAATVTATGLAFLTNSVPARAEDGPYVLPDLPYAYEALEPHIDAATMKFHHDKHHLAYITNANKAVAGKEAVSILDLQKGAIKAGVRNAGGGHYNHSLFWTTLAPAADSGKPSAALTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLMEGAACTAMIPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWAKVSEYYEQYALKQEGVPVQG 275
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK) HSP 1 Score: 318 bits (816), Expect = 4.180e-99 Identity = 166/251 (66.14%), Postives = 188/251 (74.90%), Query Frame = 1
Query: 157 SMGSLSRGDALKA---AATSAAAAGFVFSNSFPAFADGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAP-SLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAA-GTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 888
SM SR D +KA AA +AA NS PA+ADGPYTLPDLPY Y+ALEP ID+ATMKFHHDKHHA YV N NKALAGK S+L+LQ A+K G VRN+GGGHYNHC FWN + + SG+PSA LA AIDEAFGSMD MK +F A G FGSGWAWLG DGKL I GTPNQDNPLM+G AM PILGLDVWEHAYYL+Y+NRR EY++ FW +VNWA VS+NYE YAS+G GVPV+G
Sbjct: 23 SMTESSRRDFIKATGAAALGSAAFSLAGGNS-PAYADGPYTLPDLPYAYDALEPIIDSATMKFHHDKHHATYVANVNKALAGKDGVGSILDLQAGALKAGGAVRNSGGGHYNHCFFWNCMGPEKESGSPSAALATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 272
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A8J5XSB1_DIALT (Superoxide dismutase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSB1_DIALT) HSP 1 Score: 303 bits (775), Expect = 3.760e-93 Identity = 150/214 (70.09%), Postives = 166/214 (77.57%), Query Frame = 1
Query: 244 PAFADGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVP 879
PA A+ YTLPDLPY YEALEPYIDAATM+FHHDKHHA YV N NKAL GK A S+LELQKDAI G VRN+GGGHYNH LFW + G P+ LA IDEAFGS D+ K +F +AG FGSGW WLG PDGKLAI TPNQDNPLM+G T MVPILGLDVWEHAYYLKYQNRRPEYIS+++NVVNW V+ NYE YAS+G+GVP
Sbjct: 56 PALAE--YTLPDLPYDYEALEPYIDAATMRFHHDKHHATYVANVNKALEGKPAKSILELQKDAISAGGAVRNSGGGHYNHALFWEEMGPATGKG-PTGALAAKIDEAFGSFDKFKEEFSAKSAGRFGSGWCWLGVKPDGKLAIDTTPNQDNPLMDGGCETKMVPILGLDVWEHAYYLKYQNRRPEYISSWFNVVNWEKVAFNYEKYASKGQGVP 266
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S1DDM0_HEMAN (Superoxide dismutase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DDM0_HEMAN) HSP 1 Score: 295 bits (756), Expect = 5.290e-90 Identity = 144/211 (68.25%), Postives = 161/211 (76.30%), Query Frame = 1
Query: 259 GPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKT-GVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 888
GPY LP LPY Y ALEP ID TMK HHDKHH AYV N NKAL GK APS+ LQKDA+K+ +RN GGGHYNH LFW+TL SSG PSA L KAIDEAFGS D+M F AA FGSGWAWLG +P+GKL I TPNQDNPLMEGA M+P+LGLDVWEHAYYLKYQN+RPEYI AF++V+NW VVS+NY +A +G VPVQG
Sbjct: 82 GPYKLPPLPYDYAALEPAIDEMTMKIHHDKHHQAYVNNVNKALEGKDAPSITALQKDAMKSPALRNNGGGHYNHALFWSTLSPVASSGKPSAALQKAIDEAFGSTDKMVEAFSGCAAKRFGSGWAWLGVSPEGKLVIDSTPNQDNPLMEGAGCAKMIPVLGLDVWEHAYYLKYQNKRPEYIKAFFSVINWGVVSKNYADFAVKGLPVPVQG 292
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC) HSP 1 Score: 285 bits (730), Expect = 2.100e-86 Identity = 137/213 (64.32%), Postives = 164/213 (77.00%), Query Frame = 1
Query: 253 ADGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTG--VRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQ 885
A+G ++LP LPY Y++LEPYID TMK HHDKH AY+ N NKAL GK A L ++QK+AIK G +RN GGG+YNH LF+ + +SG PSA L KAID +FGSMD+MK +F AA FGSGWAWLG TP+GKLAIT TPNQDNPLMEG G M+P+LGLDVWEHAYYLKYQNRRPEYI+ +W+VVNW VS NYE +A+ KG+PV+
Sbjct: 66 AEGAFSLPALPYDYKSLEPYIDEETMKLHHDKHFNAYLTNLNKALEGKPAAKLTDIQKEAIKAGPAIRNNGGGYYNHALFFKEMGPAANSGKPSAALQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLMEGCEGQKMIPVLGLDVWEHAYYLKYQNRRPEYITNWWSVVNWEAVSNNYEKFAA--KGIPVE 276
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S0L727_9EUKA (Superoxide dismutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L727_9EUKA) HSP 1 Score: 284 bits (726), Expect = 1.450e-85 Identity = 143/239 (59.83%), Postives = 173/239 (72.38%), Query Frame = 1
Query: 169 LSRGDALKAAATSAAAAGFVFSNSFPAFA-DGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPV 882
++R +AL +A AA + + S PA A D ++LP LPY Y+ALEP++DAATMKFHHD HH AY+ N NKA+AGK + SL+ L A + NAGGGHYNHCLFW T+ + GAP+ LA ID AFGS DE KA+F AAGVFGSGWAWL DG + I TPNQDNPLM+GA +VPILG+DVWEHAYYLKYQNRRPEYI+AF+NVVNWA V E Y+ YAS+G+ VP+
Sbjct: 60 ITRRNALNLGVAAAVAAPLLGAQS-PALAEDAMFSLPPLPYAYDALEPHVDAATMKFHHDFHHQAYINNLNKAMAGKPSASLVSLMPGAKAAKLNNAGGGHYNHCLFWTTM-GPKCGGAPTGTLATKIDAAFGSYDEFKAKFSAAAAGVFGSGWAWLAVAKDGSVQIVTTPNQDNPLMDGATEPGLVPILGIDVWEHAYYLKYQNRRPEYITAFYNVVNWAKVGEYYDEYASKGEPVPL 296
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S3WV96_9SPIT (Superoxide dismutase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WV96_9SPIT) HSP 1 Score: 276 bits (707), Expect = 1.020e-83 Identity = 138/215 (64.19%), Postives = 160/215 (74.42%), Query Frame = 1
Query: 244 PAFADGP-YTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQ 885
PA AD P +TLP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKA+AGK A SL+ L DA K + NAGGGHYNHCLFW T+ ++ G PS LA+ I++AFGS D+ K+QF T AAGVFGSGWAWL T DG + IT TPNQDNPLM+ +PILGLDVWEHAYYLKYQNRRPEYISAF+NV+NW V E Y AS G P++
Sbjct: 24 PALADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPAASLVSLMPDAKKNKLNNAGGGHYNHCLFWTTM-GPKAGGTPSGVLAEKINDAFGSFDDFKSQFSTAAAGVFGSGWAWLVVTKDGSVKITSTPNQDNPLMDS---NGEIPILGLDVWEHAYYLKYQNRRPEYISAFFNVINWDKVGEYYAQAAS---GKPIE 231
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S3APP8_9EUKA (Superoxide dismutase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3APP8_9EUKA) HSP 1 Score: 273 bits (699), Expect = 4.480e-82 Identity = 131/210 (62.38%), Postives = 153/210 (72.86%), Query Frame = 1
Query: 256 DGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQ 885
DG +TLP LPY Y ALEP+IDAATMKFHHD HH AY+ N NKA+AGK A SL+ L A + NAGGGHYNHC+FW T+ G P+ LA+ +D AFGS DE K+QF AAGVFGSGWAWL T DG + I TPNQDNPLMEGA ++PI+G+DVWEHAYYLKYQNRRPEYI+AF+NVV+W V E YE AS G P++
Sbjct: 59 DGMFTLPPLPYDYAALEPHIDAATMKFHHDFHHQAYINNLNKAMAGKDAVSLVSLMPGAKAAKLNNAGGGHYNHCMFW-TIMGKGGGGTPTGVLAEKMDAAFGSYDEFKSQFSAAAAGVFGSGWAWLAVTSDGSVKIVTTPNQDNPLMEGATEAGLIPIMGIDVWEHAYYLKYQNRRPEYIAAFYNVVDWTKVGEYYETAAS---GKPIE 264
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Match: A0A7S3RIY5_EMIHU (Superoxide dismutase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RIY5_EMIHU) HSP 1 Score: 271 bits (694), Expect = 1.710e-81 Identity = 136/226 (60.18%), Postives = 159/226 (70.35%), Query Frame = 1
Query: 211 AAAGFVFSNSFPAFA--DGPYTLPDLPYPYEALEPYIDAATMKFHHDKHHAAYVGNANKALAGKTAPSLLELQKDAIKTGVRNAGGGHYNHCLFWNTLCNHESSGAPSAKLAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPV 882
AAA S PAFA D +TLP LPY Y+ALEP+IDAATMKFHHD HH AY+ N NKA+AGK L+ L A + NAGGGHYNHC+FW+TL ++ G PS L A+ +AFGS D+ KAQF AAGVFGSGWAWL DG + I TPNQDNPLM+GA ++PILG+DVWEHAYYLKYQNRRPEYI+AF+NVVNWA V E YA+ G P+
Sbjct: 32 AAACAALGTSMPAFAADDPMFTLPPLPYAYDALEPHIDAATMKFHHDFHHQAYITNLNKAMAGKPKADLVSLMPGAKAAKLNNAGGGHYNHCMFWSTL-GPKAGGEPSGALGDAMAKAFGSYDDFKAQFSAAAAGVFGSGWAWLAVAKDGSVKIVTTPNQDNPLMDGATEAGLIPILGIDVWEHAYYLKYQNRRPEYIAAFYNVVNWAKVGE---YYATAAAGKPI 253 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1226.1425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1226.1425.1 >prot_E-siliculosus-1a_F_contig1226.1425.1 ID=prot_E-siliculosus-1a_F_contig1226.1425.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1425.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp MKFTTSLVLSGAACASAFVGTPVSTRASLKSSAVRMSVSDSMGSLSRGDAback to top mRNA from alignment at E-siliculosus-1a_F_contig1226:9028..17221+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1226.1425.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1425.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1425.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:9028..17221+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1226:9028..17221+ >mRNA_E-siliculosus-1a_F_contig1226.1425.1 ID=mRNA_E-siliculosus-1a_F_contig1226.1425.1|Name=mRNA_E-siliculosus-1a_F_contig1226.1425.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1226:9028..17221+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |