mRNA_E-siliculosus-1a_F_contig12253.1422.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12253.1422.1
Unique NamemRNA_E-siliculosus-1a_F_contig12253.1422.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: A0A6H5JYF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF8_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 9.330e-39
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1
Query:   16 KGKSLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            +GKSLKFSG+AGGK++PGLSSFAASPKDAA YMLPLLA+ASELVPRERHPTTKVLIKSTAGMRLLP EAQE IYDE+YAAL
Sbjct:   21 EGKSLKFSGSAGGKIKPGLSSFAASPKDAAAYMLPLLAKASELVPRERHPTTKVLIKSTAGMRLLPLEAQEGIYDEIYAAL 101          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: D7FJZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ4_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 3.830e-38
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 1
Query:    7 APSKGKSLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            A  +G+SLKFSGAAGGK+EPGLSSFAASPKDAAEYMLPLLA+ASELVPRERHP TKVLIKSTAGMRLLP E QEAIYDEV+AAL
Sbjct:    2 AAQRGQSLKFSGAAGGKIEPGLSSFAASPKDAAEYMLPLLAKASELVPRERHPATKVLIKSTAGMRLLPLEVQEAIYDEVHAAL 85          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: A0A7S2BI47_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BI47_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.110e-12
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   40 GAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            G+ G K++PG+S F   P D AEY+ PL A A+ L+P   H  TK+ +K+TAG+RLLP E Q  ++D ++AAL
Sbjct:   66 GSKGLKVKPGVSKFNHKPNDIAEYLRPLFAHAASLIPEPYHHKTKIYLKATAGVRLLPIEEQTVMFDTLHAAL 138          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: E4WWZ1_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4WWZ1_OIKDI)

HSP 1 Score: 63.9 bits (154), Expect = 5.660e-10
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   55 KLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            K+EPGLSSFA  P+D  EY+ PL+  A   +P E+H  T + + +TAGMR++P EAQ++I  E+ A++
Sbjct:  143 KVEPGLSSFADHPEDLEEYLRPLIDLAIAHIPEEQHHETVLYMLATAGMRMIPQEAQDSILSELRASI 210          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: R1C2E9_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C2E9_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 7.450e-10
Identity = 33/69 (47.83%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   55 KLEPGLSSFAASPKDAAE-YMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            K++PGLSSF+  P++    Y+  LL  A+ +VPR +    KVL+++TAGMRL+P EA E IYD ++AA+
Sbjct:   68 KVKPGLSSFSDRPREVGSGYLTSLLDFAAGIVPRTKQARAKVLLRATAGMRLVPTEAAEVIYDSLFAAV 136          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: A0A5N5SNZ5_9CRUS (Uncharacterized protein n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SNZ5_9CRUS)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-9
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   25 SLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEV 246
            SLK       +++PGLSS+   P   AE +LPLLA+A E +P++R P T +++K+TAG+RLLP E  + +  EV
Sbjct:  136 SLKLEDELWHEVKPGLSSYKDDPVKGAESLLPLLAKAKERIPKDRWPMTPLILKATAGLRLLPTEKADDLLKEV 209          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: A0A7S2GUT9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GUT9_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 2.110e-9
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   55 KLEPGLSSFAASPKDAAE-YMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            K++PGLSSFA  P   A+ Y+ PLL  A+ +VP+      KVL+++TAGMRL+P  AQ+ IYD ++ A+
Sbjct:   86 KVKPGLSSFAERPHTVADGYLRPLLDFAAHIVPQAEQARAKVLLRATAGMRLVPPAAQQQIYDALFEAV 154          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: UPI0018A711DD (ectonucleoside triphosphate diphosphohydrolase 5-like n=4 Tax=Penaeus TaxID=133894 RepID=UPI0018A711DD)

HSP 1 Score: 62.0 bits (149), Expect = 2.720e-9
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   22 KSLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL 258
            KSLK       +++PGLSS+A +P++ A+ +LPLL  A   +P++   +T +++K+TAG+RLLP E  EA+  EV   L
Sbjct:  165 KSLKLDDELWHEIKPGLSSYADNPEEGAKSLLPLLELAKGRIPKQNWASTPIVLKATAGLRLLPEEKAEALLQEVKKVL 243          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: A0A3R7MBT3_PENVA (Uncharacterized protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7MBT3_PENVA)

HSP 1 Score: 60.1 bits (144), Expect = 5.250e-9
Identity = 31/74 (41.89%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   22 KSLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDE 243
            KSLK       +++PGLSS+A +P++ A+ +LPLL  A   +P++   +T +++K+TAG+RLLP E  EA+  E
Sbjct:  124 KSLKLDDELWHEIKPGLSSYADNPEEGAKSLLPLLELAKGRIPKQHWASTPIVLKATAGLRLLPEEKAEALLQE 197          
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Match: UPI000C6DC23A (ectonucleoside triphosphate diphosphohydrolase 5-like isoform X1 n=3 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DC23A)

HSP 1 Score: 60.8 bits (146), Expect = 6.810e-9
Identity = 30/64 (46.88%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   55 KLEPGLSSFAASPKDAAEYMLPLLARASELVPRERHPTTKVLIKSTAGMRLLPFEAQEAIYDEV 246
            ++ PGLSS++ +P  AAE ++PLL RA ++VP ++   T VL+K+TAG+RLLP ++ + I +EV
Sbjct:   99 EVRPGLSSYSENPHKAAESIVPLLERAIQIVPSDKWHKTPVLLKATAGLRLLPSDSADKILNEV 162          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12253.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYF8_9PHAE9.330e-3988.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJZ4_ECTSI3.830e-3888.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BI47_9STRA1.110e-1247.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
E4WWZ1_OIKDI5.660e-1047.06Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
R1C2E9_EMIHU7.450e-1047.83Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A5N5SNZ5_9CRUS1.440e-944.59Uncharacterized protein n=1 Tax=Armadillidium nasa... [more]
A0A7S2GUT9_9EUKA2.110e-947.83Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI0018A711DD2.720e-941.77ectonucleoside triphosphate diphosphohydrolase 5-l... [more]
A0A3R7MBT3_PENVA5.250e-941.89Uncharacterized protein n=1 Tax=Penaeus vannamei T... [more]
UPI000C6DC23A6.810e-946.88ectonucleoside triphosphate diphosphohydrolase 5-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12253contigE-siliculosus-1a_F_contig12253:420..1316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Cds size258
Start1
Stop0
Model size258
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko04090
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.GO
EC3.6.1.5,3.6.1.6
EggNOG OGsCOG5371@1,KOG1386@2759
EggNOG free text desc.nucleoside-diphosphatase activity
GOsGO:0000003,GO:0000139,GO:0000421,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0004382,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0005794,GO:0006139,GO:0006152,GO:0006163,GO:0006195,GO:0006213,GO:0006220,GO:0006244,GO:0006256,GO:0006464,GO:0006486,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009125,GO:0009126,GO:0009128,GO:0009132,GO:0009134,GO:0009135,GO:0009137,GO:0009138,GO:0009140,GO:0009141,GO:0009143,GO:0009144,GO:0009147,GO:0009150,GO:0009154,GO:0009158,GO:0009161,GO:0009164,GO:0009166,GO:0009167,GO:0009169,GO:0009179,GO:0009181,GO:0009185,GO:0009191,GO:0009193,GO:0009195,GO:0009199,GO:0009203,GO:0009205,GO:0009208,GO:0009218,GO:0009222,GO:0009259,GO:0009261,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010559,GO:0010560,GO:0010604,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017110,GO:0017111,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0022414,GO:0030139,GO:0030173,GO:0030334,GO:0030659,GO:0030666,GO:0031090,GO:0031166,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031310,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0035262,GO:0036211,GO:0036384,GO:0040012,GO:0042278,GO:0042454,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043262,GO:0043273,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045134,GO:0045137,GO:0046031,GO:0046032,GO:0046034,GO:0046036,GO:0046039,GO:0046048,GO:0046128,GO:0046130,GO:0046131,GO:0046133,GO:0046135,GO:0046434,GO:0046483,GO:0046700,GO:0046710,GO:0046712,GO:0047429,GO:0048471,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051270,GO:0055086,GO:0060049,GO:0060050,GO:0060255,GO:0061458,GO:0065007,GO:0070085,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:0080090,GO:0097636,GO:0097637,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901137,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1903018,GO:1903020,GO:2000112,GO:2000145
KEGG Pathwayko00230,ko00240,ko04142,ko05169,map00230,map00240,map04142,map05169
KEGG ReactionR00086,R00122,R00155,R00159,R00328,R00335,R00514,R00569,R00719,R00961,R02092,R02095
KEGG koko:K01510,ko:K01511,ko:K12305,ko:K14642,ko:K14643
KEGG rclassRC00002
Preferred nameENTPD7
Seed eggNOG ortholog2880.D7FJZ4
Seed ortholog evalue3.1e-32
Seed ortholog score144.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.4794526-CDS-E-siliculosus-1a_F_contig12253:419..5931622927744.4794526-CDS-E-siliculosus-1a_F_contig12253:419..593Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12253 420..593 +
1696318664.1138592-CDS-E-siliculosus-1a_F_contig12253:419..5931696318664.1138592-CDS-E-siliculosus-1a_F_contig12253:419..593Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12253 420..593 +
1622927744.4932852-CDS-E-siliculosus-1a_F_contig12253:1232..13161622927744.4932852-CDS-E-siliculosus-1a_F_contig12253:1232..1316Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12253 1233..1316 +
1696318664.1260507-CDS-E-siliculosus-1a_F_contig12253:1232..13161696318664.1260507-CDS-E-siliculosus-1a_F_contig12253:1232..1316Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12253 1233..1316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12253.1422.1prot_E-siliculosus-1a_F_contig12253.1422.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12253 420..1316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12253.1422.1

>prot_E-siliculosus-1a_F_contig12253.1422.1 ID=prot_E-siliculosus-1a_F_contig12253.1422.1|Name=mRNA_E-siliculosus-1a_F_contig12253.1422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=86bp
MHAPSKGKSLKFSGAAGGKLEPGLSSFAASPKDAAEYMLPLLARASELVP
RERHPTTKVLIKSTAGMRLLPFEAQEAIYDEVYAAL
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mRNA from alignment at E-siliculosus-1a_F_contig12253:420..1316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12253.1422.1 ID=mRNA_E-siliculosus-1a_F_contig12253.1422.1|Name=mRNA_E-siliculosus-1a_F_contig12253.1422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=897bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12253:420..1316+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACGCCCCCTCGAAGGGGAAATCCTTGAAGTTTTCGGGCGCCGCCGG GGGAAAGTTAGAGCCCGGCCTCAGCTCCTTCGCGGCATCTCCGAAAGACG CGGCGGAGTACATGCTGCCGCTGCTCGCCAGGGCCTCCGAGCTCGTGCCG CGGGAAAGGCACCCAACGACGAAGGTATGTACGTACACTACTCCGGCGCA CAAGTGTCTCTGTTGTCCTCTTGTCATCGTGCGGAAGTAGAGTTTGTTTG TGAGGCCGAATCGAGGCAAGGTTACGTCATTTACGCGAGCGGTTGTTGTG TCCGCGGCCGGGAATCCAAATCAAGATTGGTTGTTTCCGGAAAGCGGCTG GTGTGTCCGCTGCCGGTGAGAGTGCTTAGTCACTTTCGAGATTCGAGGGT GACTACTTGTACGGTTGCGTAACCCATGTCGTCTTTGTTTGAGGATGTGG TGGTTGAAGGTAATAATGTTGTATTGTCGTTGAGTGCTGATGTATAATAG ACGTTGCTCGAAGCTGTTGGTGTGCACCTTTAGAGTTCCCGTTGATTCTC ACGAAGCCCACGTCATGCTTGCCACAAGCAAGCCAAGCAAGCAACAGTGG TCCAGCCATTGCCTATCGGAATATCAACAAGCCAACACATTTATGTAGTG TTAACACTCTGTGGATGCCAACCCGGAGGAACAGGCGCAGACCTAGGTCG TTCTTACGACACATGCGTTGATCGACTACTCCACGAAGATTGATCGATGA ATCTCGAAGCAGCAAAACATCGACAACGACGACAATGACCAACGCTGATC GATCCGGCAACAGGTCTTGATCAAGTCAACAGCTGGCATGCGGCTGCTGC CCTTCGAGGCTCAAGAGGCCATCTACGACGAGGTCTACGCCGCCCTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12253:420..1316+

>mRNA_E-siliculosus-1a_F_contig12253.1422.1 ID=mRNA_E-siliculosus-1a_F_contig12253.1422.1|Name=mRNA_E-siliculosus-1a_F_contig12253.1422.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12253:420..1316+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACGCCCCCTCGAAGGGGAAATCCTTGAAGTTTTCGGGCGCCGCCGG
GGGAAAGTTAGAGCCCGGCCTCAGCTCCTTCGCGGCATCTCCGAAAGACG
CGGCGGAGTACATGCTGCCGCTGCTCGCCAGGGCCTCCGAGCTCGTGCCG
CGGGAAAGGCACCCAACGACGAAGATGCACGCCCCCTCGAAGGGGAAATC
CTTGAAGTTTTCGGGCGCCGCCGGGGGAAAGTTAGAGCCCGGCCTCAGCT
CCTTCGCGGCATCTCCGAAAGACGCGGCGGAGTACATGCTGCCGCTGCTC
GCCAGGGCCTCCGAGCTCGTGCCGCGGGAAAGGCACCCAACGACGAAGGT
CTTGATCAAGTCAACAGCTGGCATGCGGCTGCTGCCCTTCGAGGCTCAAG
AGGCCATCTACGACGAGGTCTACGCCGCCCTAGTCTTGATCAAGTCAACA
GCTGGCATGCGGCTGCTGCCCTTCGAGGCTCAAGAGGCCATCTACGACGA
GGTCTACGCCGCCCTA
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