mRNA_E-siliculosus-1a_F_contig1225.1421.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1225.1421.1
Unique NamemRNA_E-siliculosus-1a_F_contig1225.1421.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1225contigE-siliculosus-1a_F_contig1225:33755..35282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size711
Model size1088
Exons2
Ec32 orthologEc-04_002425.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1225.1421.1prot_E-siliculosus-1a_F_contig1225.1421.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1225 33997..35147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.3965855-UTR-E-siliculosus-1a_F_contig1225:33754..339961622927744.3965855-UTR-E-siliculosus-1a_F_contig1225:33754..33996Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1225 33755..33996 +
1696318664.0655806-UTR-E-siliculosus-1a_F_contig1225:33754..339961696318664.0655806-UTR-E-siliculosus-1a_F_contig1225:33754..33996Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1225 33755..33996 +
1622927744.4333668-UTR-E-siliculosus-1a_F_contig1225:35147..352821622927744.4333668-UTR-E-siliculosus-1a_F_contig1225:35147..35282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1225 35148..35282 +
1696318664.103512-UTR-E-siliculosus-1a_F_contig1225:35147..352821696318664.103512-UTR-E-siliculosus-1a_F_contig1225:35147..35282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1225 35148..35282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927744.4071038-CDS-E-siliculosus-1a_F_contig1225:33996..340861622927744.4071038-CDS-E-siliculosus-1a_F_contig1225:33996..34086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1225 33997..34086 +
1696318664.0809941-CDS-E-siliculosus-1a_F_contig1225:33996..340861696318664.0809941-CDS-E-siliculosus-1a_F_contig1225:33996..34086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1225 33997..34086 +
1622927744.4187725-CDS-E-siliculosus-1a_F_contig1225:34526..351471622927744.4187725-CDS-E-siliculosus-1a_F_contig1225:34526..35147Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1225 34527..35147 +
1696318664.091338-CDS-E-siliculosus-1a_F_contig1225:34526..351471696318664.091338-CDS-E-siliculosus-1a_F_contig1225:34526..35147Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1225 34527..35147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1225.1421.1

>prot_E-siliculosus-1a_F_contig1225.1421.1 ID=prot_E-siliculosus-1a_F_contig1225.1421.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1421.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=237bp
MLGARGDRVSASRRKLTQALEQDRLLSPPQGSSSRSESKETGGSGRNTLH
GSRRFSSREEDESEEELRDRRRLIASPPTETRPLGVRPFAGRSPSRSGMR
GGKGVQPNTKGSLTSPEKREGMKRASGDGLSDGEYILPHACRRNVRNTLG
EAGESRGPTSRRGTTSAIGQDDDKSLPADSHATAVLLEGALRNKENSRDG
QGSRKESVRIIAEDFIGNVLNDLASSPSHRDDQCFM*
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mRNA from alignment at E-siliculosus-1a_F_contig1225:33755..35282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1225.1421.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1421.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1421.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:33755..35282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCAGGACGCATGACGCATGACCGCTGCCCTACGCTCCGGTACCTTGA
CTAGCCTGACATCACAGACCACGCATACGCTTAGAATGCACCTCATCTTC
GGTGAATTTGTGTGTATGTTGCCGGTGTTGCGGTTGTGATGGTTGCAGTC
ATCGGTTAACTACATACCGCTGTTTGGAGAGAGTGGAGAGAGAAGGGCCC
GAGCTCTCAATTTTGAATGGTTTCGTTTGTGAGGTGTACTCCATGCTCGG
CGCACGCGGTGACCGTGTTTCAGCGTCACGCCGAAAGCTAACCCAGGCCT
TGGAACAAGACCGCCTCTTATCACCACCACAGGTGAAGTGTACGAGCGGT
GCAAGCGTTTAGTATTTTTGTGAAGAAGGAGTTGTGTCTTGAGTAGCGAC
CTGCGCCAATACCGATTTCCAGAGCTCGATAACTCTGCATCACACATAGA
GCCGGTGCCGAACATGGTGACGGTGGAGCCGTCCTGTTGAGAGAATCCTG
AAAACGGACCGTTTAACCCTGGTATCGTCCTCGTCTTGGAGTAGGCGGGC
TTTGAAAATCGGTCCAGGGGGTGTGGTATTCTGCTGTGCACAAAGAACAC
TTCTTCTACAACTTTATACGAAAACATACAACACAAAGTTCCAAGTCAGC
ATTCCCAAAGGGTGGAAATGTGTCGGGTATTCGCGGTGGTGATGGTTCTG
CGACGTGTGCCGGAAGGGGAATGTGCTGTAATCAACAACGTTACTGCGCG
TTCACATGTTCGGTGTCAACAGGGGTCGTCGTCTCGAAGCGAAAGCAAGG
AAACAGGAGGCAGTGGCAGAAATACACTGCACGGCTCCAGGAGATTTTCA
AGTCGTGAGGAGGACGAGAGCGAGGAGGAGCTGCGAGACAGACGCCGTCT
AATAGCTTCACCGCCTACAGAAACACGGCCGCTCGGAGTGCGACCGTTCG
CGGGGAGATCCCCGTCACGCAGTGGCATGCGCGGAGGGAAGGGGGTGCAG
CCGAATACCAAGGGCTCCCTCACGTCGCCAGAGAAACGAGAAGGCATGAA
ACGTGCTAGCGGTGACGGCCTAAGCGACGGCGAGTATATATTGCCACATG
CATGTAGAAGAAACGTCCGGAACACGCTCGGAGAAGCGGGCGAAAGCAGA
GGACCAACTAGTCGGAGAGGTACAACATCAGCAATCGGCCAGGATGACGA
CAAAAGTCTGCCAGCAGACTCGCATGCTACAGCAGTCTTGCTTGAAGGTG
CACTCAGAAATAAGGAGAACAGCAGGGATGGGCAGGGCTCCAGGAAGGAG
TCGGTGCGAATAATAGCTGAGGATTTCATCGGCAACGTCTTGAACGATCT
AGCGTCATCGCCATCTCACCGCGATGATCAGTGTTTCATGTAGCACATTC
GTTCCCGAACTCTGTAGGTTTGTGAATTGTTGAAAGCAAGCCGACGAATA
TCGTCGGCGTTGCTAGTCCCAAGCTGGCTTTTATTTTTTGCACTCTGTTT
CAGGCTTGAGAACAGAAGCGGGGACAGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1225:33755..35282+

>mRNA_E-siliculosus-1a_F_contig1225.1421.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1421.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1421.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:33755..35282+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCGGCGCACGCGGTGACCGTGTTTCAGCGTCACGCCGAAAGCTAAC
CCAGGCCTTGGAACAAGACCGCCTCTTATCACCACCACAGATGCTCGGCG
CACGCGGTGACCGTGTTTCAGCGTCACGCCGAAAGCTAACCCAGGCCTTG
GAACAAGACCGCCTCTTATCACCACCACAGGGGTCGTCGTCTCGAAGCGA
AAGCAAGGAAACAGGAGGCAGTGGCAGAAATACACTGCACGGCTCCAGGA
GATTTTCAAGTCGTGAGGAGGACGAGAGCGAGGAGGAGCTGCGAGACAGA
CGCCGTCTAATAGCTTCACCGCCTACAGAAACACGGCCGCTCGGAGTGCG
ACCGTTCGCGGGGAGATCCCCGTCACGCAGTGGCATGCGCGGAGGGAAGG
GGGTGCAGCCGAATACCAAGGGCTCCCTCACGTCGCCAGAGAAACGAGAA
GGCATGAAACGTGCTAGCGGTGACGGCCTAAGCGACGGCGAGTATATATT
GCCACATGCATGTAGAAGAAACGTCCGGAACACGCTCGGAGAAGCGGGCG
AAAGCAGAGGACCAACTAGTCGGAGAGGTACAACATCAGCAATCGGCCAG
GATGACGACAAAAGTCTGCCAGCAGACTCGCATGCTACAGCAGTCTTGCT
TGAAGGTGCACTCAGAAATAAGGAGAACAGCAGGGATGGGCAGGGCTCCA
GGAAGGAGTCGGTGCGAATAATAGCTGAGGATTTCATCGGCAACGTCTTG
AACGATCTAGCGTCATCGCCATCTCACCGCGATGATCAGTGTTTCATGTA
GGGGTCGTCGTCTCGAAGCGAAAGCAAGGAAACAGGAGGCAGTGGCAGAA
ATACACTGCACGGCTCCAGGAGATTTTCAAGTCGTGAGGAGGACGAGAGC
GAGGAGGAGCTGCGAGACAGACGCCGTCTAATAGCTTCACCGCCTACAGA
AACACGGCCGCTCGGAGTGCGACCGTTCGCGGGGAGATCCCCGTCACGCA
GTGGCATGCGCGGAGGGAAGGGGGTGCAGCCGAATACCAAGGGCTCCCTC
ACGTCGCCAGAGAAACGAGAAGGCATGAAACGTGCTAGCGGTGACGGCCT
AAGCGACGGCGAGTATATATTGCCACATGCATGTAGAAGAAACGTCCGGA
ACACGCTCGGAGAAGCGGGCGAAAGCAGAGGACCAACTAGTCGGAGAGGT
ACAACATCAGCAATCGGCCAGGATGACGACAAAAGTCTGCCAGCAGACTC
GCATGCTACAGCAGTCTTGCTTGAAGGTGCACTCAGAAATAAGGAGAACA
GCAGGGATGGGCAGGGCTCCAGGAAGGAGTCGGTGCGAATAATAGCTGAG
GATTTCATCGGCAACGTCTTGAACGATCTAGCGTCATCGCCATCTCACCG
CGATGATCAGTGTTTCATGTAG
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