mRNA_E-siliculosus-1a_F_contig1225.1420.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A6H5L4J3_9PHAE (RED_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J3_9PHAE) HSP 1 Score: 800 bits (2067), Expect = 4.910e-284 Identity = 457/488 (93.65%), Postives = 461/488 (94.47%), Query Frame = 3
Query: 42 GAKDKKQKGTWRRGKLIVASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGVVGGKEEDAIVAALAKTGXXDGGAGDTEDRDAAVLPPARRAKVSINIFEDVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKADVLPTRAEMSATVKAAARAAAARVSGDKKASPGAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELSGRKGGGGSKSSGSKHRVDNELNIIKKYMKGDK 1505
GAK+KKQKGTWRRGKLIVASG +DPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIE+LEGDGGDDR+GDRRGGRAEVRARTLMGKTVLAVLRKLSL QGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXX RERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAG XXDGGAGD EDRDAAVLPPARRAKVSINIFEDVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDS DNKADVLPTRAEMSATVKAAARAAAARVSGDKK S AGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELS RKGGGGSKSSGSKHRVDNELNIIKKYMKGDK
Sbjct: 80 GAKEKKQKGTWRRGKLIVASGVNDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEVLEGDGGDDRSGDRRGGRAEVRARTLMGKTVLAVLRKLSLSQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXX-RERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGXXXXXXXXXXXXXXXXXXXXDGGAGDMEDRDAAVLPPARRAKVSINIFEDVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDS-DNKADVLPTRAEMSATVKAAARAAAARVSGDKKTSSEAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELSVRKGGGGSKSSGSKHRVDNELNIIKKYMKGDK 565
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: D7FT17_ECTSI (RED_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT17_ECTSI) HSP 1 Score: 734 bits (1894), Expect = 7.460e-260 Identity = 417/436 (95.64%), Postives = 418/436 (95.87%), Query Frame = 3
Query: 198 MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGVVGGKEEDAIVAALAKTGXXDGGAGDTEDRDAAVLPPARRAKVSINIFEDVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKADVLPTRAEMSATVKAAARAAAARVSGDKKASPGAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELSGRKGGGGSKSSGSKHRVDNELNIIKKYMKGDK 1505
MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAG VG XX GGAGDTEDRDAAVLPPARRAKVSINIFED+DDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKADVLPTRAEMSATVKAAARAAAARVSGDKKAS GAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELSGRKGGGGSKSSGSKHRVDNELNIIKKYMKGDK
Sbjct: 1 MDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGGVGXXXXXXXXXXXXXXXXXXGGAGDTEDRDAAVLPPARRAKVSINIFEDIDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKADVLPTRAEMSATVKAAARAAAARVSGDKKASSGAGARETGKSGGRDKIERDIFAARPSRGQALGVSAGGYDVYPETGDFETYDSDEDATNKKDAKPGPEGXXXXXXXXXXXXXXXNHDKHPAYDKPKASFPFGVKRSELSGRKGGGGSKSSGSKHRVDNELNIIKKYMKGDK 436
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A7S3XKR5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKR5_HETAK) HSP 1 Score: 112 bits (281), Expect = 3.450e-23 Identity = 81/226 (35.84%), Postives = 114/226 (50.44%), Query Frame = 3
Query: 123 YRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGDDRNGDRRGGR--------------------AEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGVVGGKEEDAIVA 740
YRDRA ERR+G NPDY D + +M MD E +KYLGGDV+HTHLV+GLDYALL K+R+E +QQ + LE + +G A +R RT +G+ V + SL F ++ +EF+LDP S QE+PT V+ + D E +++ L + VE AF RQ +R+RK+ R + GK+ + A
Sbjct: 114 YRDRAAERRQGYNPDYDDDIEKMVQMDVEKSKYLGGDVKHTHLVRGLDYALLNKVRQETLEQQQQQLEATLEAQKKSKVQGXXXXXXXXXXXXXXXXXLAAAVARMRTRTPLGRGVQLYFAQRSLR---APVQFGQLSFEFDLDPASAQEVPTTVSKAKADAEAEDDTLETA------ALDDALAQAVEQAFVGIRQGLKAGKRRRKKGRGQPAPEKGKKPAVVDA 330
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A7S2W4J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4J1_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 3.790e-18 Identity = 112/362 (30.94%), Postives = 164/362 (45.30%), Query Frame = 3
Query: 120 KYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREE-----------ERQQQIEILEGDGGDDRNGDRRGGRAEV------------RARTLMGKTVLAVL-RKLSLGQG-----GGGPD-------FRRVGYEFELDP---ESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGVVGGKEEDAIVAALAKTGXXDGGAGDTEDRDAAVLPPARRAKVSINIFE--------DVDDRYVPPGSAGSASQPPVGAAGAAKGYFSGLRAKNAGDSADNKAD---VLPTRAEMSATVKAAARAAAA 1055
KYRDRA+ERRK NPDY + ++ +D E +KYLGGDVEHTHLVKGLDYALL K+R+E + QQ + G + R A+V RT MGK++ L R L L + G P F R+G+EF+L E E+PT V+ + + G + H L++E L++RV A +R+ G +R +KR+R + + GG G T+D A+ PA +A ++ F+ D ++ P G ++ AA GYFS LRA + D + + D T+ ++ A +K+ AAA
Sbjct: 71 KYRDRANERRKEINPDYKTDVQKLLEVDIEKSKYLGGDVEHTHLVKGLDYALLSKVRDEITTDKDDIGATKSQQTKKTARIPQGLKKGSSRTVSAAQVLPTHRSTELAAISTRTRMGKSLAFFLARSLELEKPPVKSKAGRPTKTATEEAFERLGFEFQLSSHPSEGPSELPTMVSRAKVNWGGTGIGRDAEDDHLLALVDEKLIQRVVKALN-YRRDG---KRSKKRSRPSSQLRGGNT------------------GTTKDEPAS--SPADKAPTPLDDFDIFEGAGRYDAEEAIDPSGGDKRETREDS----AAPGYFSNLRAVSNMDLQEQEVDKDAAAETKPDLGAIMKSVKGLAAA 404
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A4D9CVF8_9STRA (RED_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF8_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 5.990e-18 Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = 3
Query: 93 VASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGD------------GGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPDFRRVGYEFEL 491
VA G + YRDRA+ERRKG NPDY D++ ++ MDAETTKYLGGDV+HTHLVKGLDYALL ++R ++ + E GG +R RR A ++RTL+GK++ A L G RR+ E++L
Sbjct: 140 VAGGASEEGGYRDRAEERRKGVNPDYEDEIARLVHMDAETTKYLGGDVKHTHLVKGLDYALLQRVRAGLKEGEGEXXXXXXXXXXXXXXXXXGGMER---RRKSLAAAQSRTLLGKSLQAFLVDRLSGVVRPVEAIRRLALEYDL 281
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A812YWK0_SYMMI (SMU2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YWK0_SYMMI) HSP 1 Score: 86.7 bits (213), Expect = 1.790e-14 Identity = 62/163 (38.04%), Postives = 81/163 (49.69%), Query Frame = 3
Query: 123 YRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQ----------QQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLR--KLSLGQGGG-------------GPDFRRVGYEFELDPESTQEIPTAVAHS 536
YRDRA ERR NPDY +L +A++D E TKYLGGD EHTHLVKGLDYALL K+R + + Q +E LE G + V A++ +G + A+L K S + GG R YEF+ +P E+PT + S
Sbjct: 73 YRDRAQERRNDANPDYDAQLEAVANLDVEQTKYLGGDEEHTHLVKGLDYALLRKVRNQTEKNEARDQDSPDQLLESLENIGTR---------LSRVAAQSQLGDGIKALLLSDKGSFVRAGGRYVKAQDIPRGVKNTALSRTAYEFDTNPLGEAELPTVLRRS 226
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A388LVC3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LVC3_CHABU) HSP 1 Score: 88.2 bits (217), Expect = 2.580e-14 Identity = 64/165 (38.79%), Postives = 87/165 (52.73%), Query Frame = 3
Query: 123 YRDRADERRKGQNPDYADKLNQMASMDA-------------------ETTKYLGGDVEHTHLVKGLDYALLVKIREE-ERQQQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGGGPD----FRRVGYEFELDPESTQEIPTAVAHSLGD 545
YRDRA ERR+ QNPDY ++++ S+ A E +K+LGGDVEHTHLVKGLDYALL K+R E ER++ E + D GD + +R + RT +GK+V + K + P+ R + F++D E EIPT V S D
Sbjct: 123 YRDRAKERREDQNPDYEQAMSELGSLHAVAPPGTTDLRTSDAHRISIENSKFLGGDVEHTHLVKGLDYALLQKVRSELERKRDGE--DEDFGDKKKKERLSEEKSMTFRTALGKSVYKWIIKPNHNS---KPNEMFLLGRTAFLFDMDEEFAHEIPTTVHRSKAD 282
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A662WVS5_9STRA (RED_N domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVS5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.260e-13 Identity = 72/222 (32.43%), Postives = 115/222 (51.80%), Query Frame = 3
Query: 117 NKYRDRADERRKGQNPDYADKLNQMASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQ----QQIEILEGDGGDDRNGDRRGGRAEVRARTLMGKTVLAVLRKLSLGQGGG---GPDFR-------RVGYEFELDPESTQEIPTAVAHSLGDDGEEXXXXXXRERHTNYLMEEDLLERVESAFTLFRQHGGKARRQRKRARDKAGVVGGKEEDAIVA 740
N YRDRA ERRKG N D D ++ A +DAE +K+LGGD+EHTHLVKGLDYALL +++ E+++ + E L G+ DR+ + ++ MG+ V + S G P + ++ Y F L P+ + P +V S D E + + +++E L+ RV + ++ GGK R++K+A + + +G KE ++ A
Sbjct: 75 NVYRDRAAERRKGGNGDMID-ADEFAHLDAEQSKFLGGDMEHTHLVKGLDYALLAQLKREKQKLLHATEAEKLRHQHGEASGTDRKPSEKRLTFKSRMGRLVYFHACQSSPASDAGYGHRPSVKSEQFLPGKMYYTFNLSPDEMESTPVSVQRSKEDCPEP-------DEVASGMVDEALIARV-TELMRSKKSGGKKLRKKKKA-EHSQHIGDKEGESEAA 286
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A7R9Z3L9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z3L9_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 5.020e-13 Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 105 DDDPNKYRDRADERRKGQNPDYADKLNQMAS----------MDAETTKYLGGDVEHTHLVKGLDYALLVKIR---EEERQQQIEILEGDGG 338
+DD KYRDRA+ERR+G NPDYA NQ+A+ + E TKYLGGD+EHTHLVKGLD+ALL K R E + +G+GG
Sbjct: 67 EDDGPKYRDRAEERRRGINPDYAS-ANQLAAALPGDVDMNALSVEETKYLGGDIEHTHLVKGLDFALLQKERGKLERSKDSDGGPADGEGG 156
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Match: A0A397GNT5_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GNT5_9GLOM) HSP 1 Score: 80.5 bits (197), Expect = 5.220e-12 Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 3
Query: 57 KQKGTWRRGKLIVASGDDDPNKYRDRADERRKGQNPDYADKLNQMASMDAET---------TKYLGGDVEHTHLVKGLDYALLVKIREE 296
K K + R KL + + NKYRDRA ERRKG NPDY + + ++++ET +KYLGGD EHTHLVKGLDYALL K+R E
Sbjct: 68 KLKKSTRFRKLETSDAETTDNKYRDRAAERRKGANPDYQETEQILKALNSETLEAKLIYEQSKYLGGDTEHTHLVKGLDYALLAKVRNE 156 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1225.1420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1225.1420.1 >prot_E-siliculosus-1a_F_contig1225.1420.1 ID=prot_E-siliculosus-1a_F_contig1225.1420.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=440bp MASMDAETTKYLGGDVEHTHLVKGLDYALLVKIREEERQQQIEILEGDGGback to top mRNA from alignment at E-siliculosus-1a_F_contig1225:28315..33091+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1225.1420.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1420.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4777bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:28315..33091+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1225:28315..33091+ >mRNA_E-siliculosus-1a_F_contig1225.1420.1 ID=mRNA_E-siliculosus-1a_F_contig1225.1420.1|Name=mRNA_E-siliculosus-1a_F_contig1225.1420.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2640bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1225:28315..33091+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |