mRNA_E-siliculosus-1a_F_contig12231.1409.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: A0A5E4NJT5_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4NJT5_9HEMI) HSP 1 Score: 275 bits (703), Expect = 9.340e-83 Identity = 209/468 (44.66%), Postives = 223/468 (47.65%), Query Frame = 1
Query: 1 TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDRWPPR*RPVPLCRRRPSIGTTLQRHPFSELVASAATNAFHGL*IRVDFGALTRRSVHPAAPVLLTKNGPLSA*GSVAGFVRALRIG*GHILRVTSLLSPHHGAESHRRP-IRPRTGGTRR---------RQLS*GKLRMEPATRWFD*SFAPIPSSD--DRFARQNRCGPPSGVRPRSAETDLAETPPDCGPARLSNAGGFGR*AIITVDSRTR*T----PWSVFQDGSESSPKIVADRRGSPRG-PDVDGSCRRASRPGAPGFGAGRSRRSATAATNRHPGPSTGAQRVATSAYRARNPAGSHLPTVNSPGGDSRALSVYTRTVSRSYELSLQSSFQLSLTVLVHYRSPLDGVYHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR 1353
TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDR +RH ELVASA ILRVTSLLSPHHGAESHRRP R R G QL G + + P P + D R A + + S T + +P S + G+ R R T P + Q + PKIVADRRG+PRG P VDGSCRRASRPGAPGFGAGRSR SATAATNRH G+YHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR
Sbjct: 246 TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDR---------------------RRH--RELVASA------------------------------------------------------DILRVTSLLSPHHGAESHRRPNARERAGHVGASYPEGNFGWNQLLDGSISLSP--------LYPAQTIDLHVRIA--------ADLHQESLRTSIRVSPDFILARHSSPSFGYQRVRSGCAPGRPEPTWRRRPRTADQRDFKRRPKIVADRRGTPRGGPVVDGSCRRASRPGAPGFGAGRSRLSATAATNRH---------------------------------------------------XXXXXXXXXXXXXXXXXXXXXGLYHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR 569
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LP25_ACYPI (Uncharacterized protein n=7 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LP25_ACYPI) HSP 1 Score: 252 bits (643), Expect = 9.210e-72 Identity = 172/350 (49.14%), Postives = 190/350 (54.29%), Query Frame = 2
Query: 332 PKMAH*APRVPSPASYAL*E*VEVTSSVLRACC-------HRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAVTYRP*IRPAGTRGLCPFTPERFHVLMNSLFKVLFNFPSRYLSTIGLP*MEFTTSFGLHSQATRLEGAVRSRDVTTALLAWHHLRAMAPFKGDLDRRVRPGNEAGP 1312
P A P +PS A Y S+ RA C + +P + YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF SPLTRAHVRLLGPCFKTGRKVAR +S TDG GPR G+PT ++ G + R +A D TRA+RPAPN SRRP T R+IRPAV RP + G SR L LP +FGLHSQATRLEGAVRSR+ TA P +G L P P
Sbjct: 256 PPRATTGPTMPSTAEYRH---DAPAPSIFRASCFGRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV--RPTVNSPGG-------------------------DSRALLRWSLP-----PAFGLHSQATRLEGAVRSRNAVTASTGLAPSAGHGPVQGRLGPSRAPRQRGRP 551
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XPY4_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XPY4_ACYPI) HSP 1 Score: 242 bits (618), Expect = 6.670e-71 Identity = 172/354 (48.59%), Postives = 195/354 (55.08%), Query Frame = 2
Query: 5 QPPRAPLEYLLLPPRSAPTAAPGDLATCP-STHTAAPSYSSGLAGTGGHRGDARSHCAADGRV*A----RRSSAIHFQ--S*LLRQQPTPFMVSEYASISAP*LGVRFIPQRQFCLPKMAH*APRVPSPASYAL*E*VEVTSSVLRACCHRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAV 997
+PPRAPLEYLLLPPRSAPTAA G LATCP H A D H A DG + R + I Q S L + + S + S + + P ++ + T C+ +P + YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF SPLTRAHVRLLGPCFKTGRKVAR +S TDG GPR G+PT ++ G + R +A D TRA+RPAPN SRRP T R+IRPAV
Sbjct: 93 EPPRAPLEYLLLPPRSAPTAAAGGLATCPFDAHRRAILLVEACRDRPAASDD-WPHYAVDGPTDSDFHGHRPAVISNQRLSWSLYTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLR----------------TRFTRCTRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV 410
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9M345_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M345_ACYPI) HSP 1 Score: 229 bits (584), Expect = 9.610e-65 Identity = 140/245 (57.14%), Postives = 154/245 (62.86%), Query Frame = 2
Query: 332 PKMAH*APRVPSPASYAL*E*VEVTSSVLRACC-------HRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAV 997
P A P +PS A Y S+ RA C + +P + YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF SPLTRAHVRLLGPCFKTGRKVAR +S TDG GPR G+PT ++ G + R +A D TRA+RPAPN SRRP T R+IRPAV
Sbjct: 302 PPRATTGPTMPSTAEYRH---DAPAPSIFRASCFGRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV 524
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XHS1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XHS1_ACYPI) HSP 1 Score: 170 bits (431), Expect = 4.890e-47 Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query: 48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
D HRR + + A R PPR T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF R HPPCYE VVTAP
Sbjct: 59 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 172
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LRW1_ACYPI (Uncharacterized protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LRW1_ACYPI) HSP 1 Score: 170 bits (431), Expect = 6.270e-46 Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query: 48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
D HRR + + A R PPR T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF R HPPCYE VVTAP
Sbjct: 122 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 235
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XCB2_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XCB2_ACYPI) HSP 1 Score: 171 bits (432), Expect = 3.850e-45 Identity = 96/131 (73.28%), Postives = 98/131 (74.81%), Query Frame = 3
Query: 48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
D HRR + I A R PPR T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF R HPPCYE VVTAP
Sbjct: 208 DAHRRAILLIE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 321
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LYG4_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LYG4_ACYPI) HSP 1 Score: 169 bits (427), Expect = 6.130e-45 Identity = 98/163 (60.12%), Postives = 107/163 (65.64%), Query Frame = 2
Query: 428 CHRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDF-RTPVGSVA----RPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDGGPRGDPTSTVLAVGQAGQEHRGSAR 886
C+ +P + YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF R V S+ R +V G + R+ DG STVLAVG+A EHRGSAR
Sbjct: 15 CYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFERRWVRSLGHRPHRKRFTFIAPNVVFHGSESSSKHVADRRDLACDGA-----ASTVLAVGRADHEHRGSAR 172
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9KH53_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KH53_ACYPI) HSP 1 Score: 170 bits (431), Expect = 3.340e-44 Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query: 48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
D HRR + + A R PPR T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF R HPPCYE VVTAP
Sbjct: 112 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 225
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1X179_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X179_ACYPI) HSP 1 Score: 170 bits (431), Expect = 2.980e-43 Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query: 48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
D HRR + + A R PPR T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF R HPPCYE VVTAP
Sbjct: 248 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 361 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12231.1409.1 >prot_E-siliculosus-1a_F_contig12231.1409.1 ID=prot_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=52bp TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDRWPPback to top mRNA from alignment at E-siliculosus-1a_F_contig12231:1..1656- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12231.1409.1 ID=mRNA_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1656bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12231:1..1656- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12231:1..1656- >mRNA_E-siliculosus-1a_F_contig12231.1409.1 ID=mRNA_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12231:1..1656- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |