mRNA_E-siliculosus-1a_F_contig12231.1409.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12231.1409.1
Unique NamemRNA_E-siliculosus-1a_F_contig12231.1409.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: A0A5E4NJT5_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4NJT5_9HEMI)

HSP 1 Score: 275 bits (703), Expect = 9.340e-83
Identity = 209/468 (44.66%), Postives = 223/468 (47.65%), Query Frame = 1
Query:    1 TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDRWPPR*RPVPLCRRRPSIGTTLQRHPFSELVASAATNAFHGL*IRVDFGALTRRSVHPAAPVLLTKNGPLSA*GSVAGFVRALRIG*GHILRVTSLLSPHHGAESHRRP-IRPRTGGTRR---------RQLS*GKLRMEPATRWFD*SFAPIPSSD--DRFARQNRCGPPSGVRPRSAETDLAETPPDCGPARLSNAGGFGR*AIITVDSRTR*T----PWSVFQDGSESSPKIVADRRGSPRG-PDVDGSCRRASRPGAPGFGAGRSRRSATAATNRHPGPSTGAQRVATSAYRARNPAGSHLPTVNSPGGDSRALSVYTRTVSRSYELSLQSSFQLSLTVLVHYRSPLDGVYHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR 1353
            TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDR                     +RH   ELVASA                                                       ILRVTSLLSPHHGAESHRRP  R R G              QL  G + + P          P  + D   R A        + +   S  T +  +P        S + G+ R        R   T    P +  Q   +  PKIVADRRG+PRG P VDGSCRRASRPGAPGFGAGRSR SATAATNRH                                                                        G+YHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR
Sbjct:  246 TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDR---------------------RRH--RELVASA------------------------------------------------------DILRVTSLLSPHHGAESHRRPNARERAGHVGASYPEGNFGWNQLLDGSISLSP--------LYPAQTIDLHVRIA--------ADLHQESLRTSIRVSPDFILARHSSPSFGYQRVRSGCAPGRPEPTWRRRPRTADQRDFKRRPKIVADRRGTPRGGPVVDGSCRRASRPGAPGFGAGRSRLSATAATNRH---------------------------------------------------XXXXXXXXXXXXXXXXXXXXXGLYHQLRAALSSNQTRRRGPIPGRYDGPTGLAPSAGHGPVQGRLGPSRAPRQRGRPVRHNSHTCRGTKVR 569          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LP25_ACYPI (Uncharacterized protein n=7 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LP25_ACYPI)

HSP 1 Score: 252 bits (643), Expect = 9.210e-72
Identity = 172/350 (49.14%), Postives = 190/350 (54.29%), Query Frame = 2
Query:  332 PKMAH*APRVPSPASYAL*E*VEVTSSVLRACC-------HRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAVTYRP*IRPAGTRGLCPFTPERFHVLMNSLFKVLFNFPSRYLSTIGLP*MEFTTSFGLHSQATRLEGAVRSRDVTTALLAWHHLRAMAPFKGDLDRRVRPGNEAGP 1312
            P  A   P +PS A Y          S+ RA C       +     +P   +     YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF           SPLTRAHVRLLGPCFKTGRKVAR +S TDG     GPR      G+PT   ++ G   +  R +A D            TRA+RPAPN SRRP T R+IRPAV  RP +   G                           SR L    LP      +FGLHSQATRLEGAVRSR+  TA           P +G L     P     P
Sbjct:  256 PPRATTGPTMPSTAEYRH---DAPAPSIFRASCFGRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV--RPTVNSPGG-------------------------DSRALLRWSLP-----PAFGLHSQATRLEGAVRSRNAVTASTGLAPSAGHGPVQGRLGPSRAPRQRGRP 551          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XPY4_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XPY4_ACYPI)

HSP 1 Score: 242 bits (618), Expect = 6.670e-71
Identity = 172/354 (48.59%), Postives = 195/354 (55.08%), Query Frame = 2
Query:    5 QPPRAPLEYLLLPPRSAPTAAPGDLATCP-STHTAAPSYSSGLAGTGGHRGDARSHCAADGRV*A----RRSSAIHFQ--S*LLRQQPTPFMVSEYASISAP*LGVRFIPQRQFCLPKMAH*APRVPSPASYAL*E*VEVTSSVLRACCHRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAV 997
            +PPRAPLEYLLLPPRSAPTAA G LATCP   H  A               D   H A DG   +     R + I  Q  S  L  +    + S + S  +     +  P ++    +                      T       C+     +P   +     YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF           SPLTRAHVRLLGPCFKTGRKVAR +S TDG     GPR      G+PT   ++ G   +  R +A D            TRA+RPAPN SRRP T R+IRPAV
Sbjct:   93 EPPRAPLEYLLLPPRSAPTAAAGGLATCPFDAHRRAILLVEACRDRPAASDD-WPHYAVDGPTDSDFHGHRPAVISNQRLSWSLYTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLR----------------TRFTRCTRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV 410          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9M345_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9M345_ACYPI)

HSP 1 Score: 229 bits (584), Expect = 9.610e-65
Identity = 140/245 (57.14%), Postives = 154/245 (62.86%), Query Frame = 2
Query:  332 PKMAH*APRVPSPASYAL*E*VEVTSSVLRACC-------HRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDFRTPVGSVARPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDG-----GPR------GDPTSTVLAVGQAGQEHRGSARDGHAGARPPRRTATRALRPAPNESRRPHTGREIRPAV 997
            P  A   P +PS A Y          S+ RA C       +     +P   +     YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF           SPLTRAHVRLLGPCFKTGRKVAR +S TDG     GPR      G+PT   ++ G   +  R +A D            TRA+RPAPN SRRP T R+IRPAV
Sbjct:  302 PPRATTGPTMPSTAEYRH---DAPAPSIFRASCFGRHPPCYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFER--------RSPLTRAHVRLLGPCFKTGRKVARNTSPTDGTPPATGPRRRFLPSGEPT---MSTGARRERSRRNATDAT--------NVTRAIRPAPNGSRRPLTERKIRPAV 524          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XHS1_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XHS1_ACYPI)

HSP 1 Score: 170 bits (431), Expect = 4.890e-47
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query:   48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
            D HRR +  +   A R  PPR               T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF  R   HPPCYE VVTAP
Sbjct:   59 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 172          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LRW1_ACYPI (Uncharacterized protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LRW1_ACYPI)

HSP 1 Score: 170 bits (431), Expect = 6.270e-46
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query:   48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
            D HRR +  +   A R  PPR               T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF  R   HPPCYE VVTAP
Sbjct:  122 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 235          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1XCB2_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1XCB2_ACYPI)

HSP 1 Score: 171 bits (432), Expect = 3.850e-45
Identity = 96/131 (73.28%), Postives = 98/131 (74.81%), Query Frame = 3
Query:   48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
            D HRR +  I   A R  PPR               T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF  R   HPPCYE VVTAP
Sbjct:  208 DAHRRAILLIE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 321          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9LYG4_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9LYG4_ACYPI)

HSP 1 Score: 169 bits (427), Expect = 6.130e-45
Identity = 98/163 (60.12%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  428 CHRTTARSPTGVQ-----YARERAGHVGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPGRPKPTWRRRPRTADQRDF-RTPVGSVA----RPSSPLTRAHVRLLGPCFKTGRKVARKSSLTDGGPRGDPTSTVLAVGQAGQEHRGSAR 886
            C+     +P   +     YARERAGH+GASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAP RPKPTWRRRPRTADQRDF R  V S+     R        +V   G    +     R+    DG       STVLAVG+A  EHRGSAR
Sbjct:   15 CYERVVTAPYSAESHRRPYARERAGHIGASYPEGNFGWNQLLDGSISLSPLYPAQTIDLHVRIAADLHQGCAPSRPKPTWRRRPRTADQRDFERRWVRSLGHRPHRKRFTFIAPNVVFHGSESSSKHVADRRDLACDGA-----ASTVLAVGRADHEHRGSAR 172          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: J9KH53_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KH53_ACYPI)

HSP 1 Score: 170 bits (431), Expect = 3.340e-44
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query:   48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
            D HRR +  +   A R  PPR               T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF  R   HPPCYE VVTAP
Sbjct:  112 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 225          
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Match: X1X179_ACYPI (Uncharacterized protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X179_ACYPI)

HSP 1 Score: 170 bits (431), Expect = 2.980e-43
Identity = 95/131 (72.52%), Postives = 98/131 (74.81%), Query Frame = 3
Query:   48 DLHRRRLQAISRPALRRTPPRHPTRRGLPGPVATEVTPGPTVPPTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRFENRLRSHPPCYELVVTAP 440
            D HRR +  +   A R  PPR               T GPT+P TAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF  R   HPPCYE VVTAP
Sbjct:  248 DAHRRAILLVE--ACRDRPPR--------------ATTGPTMPSTAEYRHDAPAPSIFRASCFGSNQRLSWSLNTRRFRRLNSAFGSSRSASSAYQKWPTKRLGFRRRLRTRF-TRCTRHPPCYERVVTAP 361          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12231.1409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E4NJT5_9HEMI9.340e-8344.66Uncharacterized protein (Fragment) n=1 Tax=Cinara ... [more]
J9LP25_ACYPI9.210e-7249.14Uncharacterized protein n=7 Tax=Acyrthosiphon pisu... [more]
X1XPY4_ACYPI6.670e-7148.59Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9M345_ACYPI9.610e-6557.14Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
X1XHS1_ACYPI4.890e-4772.52Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9LRW1_ACYPI6.270e-4672.52Uncharacterized protein n=2 Tax=Acyrthosiphon pisu... [more]
X1XCB2_ACYPI3.850e-4573.28Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9LYG4_ACYPI6.130e-4560.12Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
J9KH53_ACYPI3.340e-4472.52Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]
X1X179_ACYPI2.980e-4372.52Uncharacterized protein n=1 Tax=Acyrthosiphon pisu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12231contigE-siliculosus-1a_F_contig12231:1..1656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size156
Model size1354
Exons7
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2CY6B@1,2S2CZ@2759
Seed eggNOG ortholog5297.GMQ_00169T0
Seed ortholog evalue1.3e-20
Seed ortholog score104.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12231.1409.1prot_E-siliculosus-1a_F_contig12231.1409.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12231 1501..1656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927742.6540387-UTR-E-siliculosus-1a_F_contig12231:0..2181622927742.6540387-UTR-E-siliculosus-1a_F_contig12231:0..218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1..218 -
1696318663.2639687-UTR-E-siliculosus-1a_F_contig12231:0..2181696318663.2639687-UTR-E-siliculosus-1a_F_contig12231:0..218Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1..218 -
1622927742.6705606-UTR-E-siliculosus-1a_F_contig12231:232..6471622927742.6705606-UTR-E-siliculosus-1a_F_contig12231:232..647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 233..647 -
1696318663.2729914-UTR-E-siliculosus-1a_F_contig12231:232..6471696318663.2729914-UTR-E-siliculosus-1a_F_contig12231:232..647Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 233..647 -
1622927742.68498-UTR-E-siliculosus-1a_F_contig12231:706..8061622927742.68498-UTR-E-siliculosus-1a_F_contig12231:706..806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 707..806 -
1696318663.2807589-UTR-E-siliculosus-1a_F_contig12231:706..8061696318663.2807589-UTR-E-siliculosus-1a_F_contig12231:706..806Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 707..806 -
1622927742.6979363-UTR-E-siliculosus-1a_F_contig12231:873..10901622927742.6979363-UTR-E-siliculosus-1a_F_contig12231:873..1090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 874..1090 -
1696318663.2887273-UTR-E-siliculosus-1a_F_contig12231:873..10901696318663.2887273-UTR-E-siliculosus-1a_F_contig12231:873..1090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 874..1090 -
1622927742.7163622-UTR-E-siliculosus-1a_F_contig12231:1134..11541622927742.7163622-UTR-E-siliculosus-1a_F_contig12231:1134..1154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1135..1154 -
1696318663.2969172-UTR-E-siliculosus-1a_F_contig12231:1134..11541696318663.2969172-UTR-E-siliculosus-1a_F_contig12231:1134..1154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1135..1154 -
1622927742.7300596-UTR-E-siliculosus-1a_F_contig12231:1210..13521622927742.7300596-UTR-E-siliculosus-1a_F_contig12231:1210..1352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1211..1352 -
1696318663.304602-UTR-E-siliculosus-1a_F_contig12231:1210..13521696318663.304602-UTR-E-siliculosus-1a_F_contig12231:1210..1352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1211..1352 -
1622927742.7407668-UTR-E-siliculosus-1a_F_contig12231:1415..15001622927742.7407668-UTR-E-siliculosus-1a_F_contig12231:1415..1500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1416..1500 -
1696318663.313103-UTR-E-siliculosus-1a_F_contig12231:1415..15001696318663.313103-UTR-E-siliculosus-1a_F_contig12231:1415..1500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12231 1416..1500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927742.7563124-CDS-E-siliculosus-1a_F_contig12231:1500..16561622927742.7563124-CDS-E-siliculosus-1a_F_contig12231:1500..1656Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12231 1501..1656 -
1696318663.322093-CDS-E-siliculosus-1a_F_contig12231:1500..16561696318663.322093-CDS-E-siliculosus-1a_F_contig12231:1500..1656Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12231 1501..1656 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12231.1409.1

>prot_E-siliculosus-1a_F_contig12231.1409.1 ID=prot_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=52bp
TAAPEGPSRVFATTTKICTDGGSRRSRDLPFDAHRRAILLVGACRDRWPP
R*
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mRNA from alignment at E-siliculosus-1a_F_contig12231:1..1656-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12231.1409.1 ID=mRNA_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1656bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12231:1..1656- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGGCAGCCCCCGAGGGCCCCTCTCGAGTATTTGCTACTACCACCAAGAT CTGCACCGACGGCGGCTCCAGGCGATCTCGCGACCTGCCCTTCGACGCAC ACCGCCGCGCCATCCTACTCGTCGGGGCTTGCCGGGACCGGTGGCCACCG AGGTGACGCCCGGTCCCACTGTGCCGCCGACGGCCGAGTATAGGCACGAC GCTCCAGCGCCATCCATTTTCAGAGCTAGTTGCTTCGGCAGGTGAGTTGT TACACACTCCTTAGCGGATTCCGACTTCCATGGCCACCGTCCTGCTGTCA TCAGCAACCAACGCCTTTCATGGTCTCTGAATACGCGTCGATTTCGGCGC CTTAACTCGGCGTTCGGTTCATCCCGCAGCGCCAGTTCTGCTTACCAAAA ATGGCCCACTAAGCGCCTAGGGTTCCGTCGCCGGCTTCGTACGCGCGTGC GCGGTGTACGAACACCATTAGGTTATAAGCCGGCGATCTCACCCATTTAT AGTTTGAGAATAGGTTGAGGTCGTTTCGACCCCAATGTCCTCTAATCATT CGCTTTACCGTATGAGACATCCTCCGTGTTACGAGCTTGTTGTCACCGCA CCACGGCGCGGAGTCCCACCGGCGTCCAATACGCCCGCGAACGGGCGGGA CACGTCGGCGCCAGCTATCCTGAGGGAAACTTCGGATGGAACCAGCTACT AGATGGTTCGATTAGTCTTTCGCCCCTATACCCAGCTCAGACGATCGATT TGCACGTCAGAATCGCTGCGGACCTCCATCAGGGTTTCCCCTGACTTCAT CCTGGCCAGGCATAGTTCACCATCTTTCGGGTACCAACGTGTGCGCTCAG GGTGCGCCCCCGGTCGGCCGAAACCGACCTGGCGGAGACGCCCCCGGACT GCGGACCAGCGCGACTTTCGAACGCCGGTGGGTTCGGTCGCTAGGCCATC GTCCTGACAGAGTTCGAAGTGTCATCACTTTCATTGCGCCAAACGTGGTT TTTCATAAGATCACCGTTGACTCGCGCACACGTTAGACTCCTTGGTCCGT GTTTCAAGACGGGTCGGAAAGTAGCCCGAAAATCGTCGCTGACCGACGGG GGTCCCCGAGGGGACCCGACGTCGACGGTTCTTGCCGTCGGGCAAGCCGG CCAGGAGCACCGGGGTTCGGCGCGGGACGGTCACGCCGGAGCGCGACCGC CGCGACGAACCGCCACCCGGGCCCTTCGACCGGCGCCCAACGAGTCGCGA CGTCCGCATACCGGGCGAGAAATCCGGCCGGCAGTCACCTACCGACCGTG AATTCGCCCGGCGGGGACTCGCGGGCTCTGTCCGTTTACACCCGAACGGT TTCACGTTCTTATGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCA CGGTACTTGTCCACTATCGGTCTCGTGGCCGTATTTAGCCTTAGATGGAG TTTACCACCAGCTTCGGGCTGCACTCTCAAGCAACCAGACTCGAAGGCGC GGTCCGATCCCGGGACGTTACGACGGCCCTACTGGCCTGGCACCATCTGC GGGCCATGGCCCCGTTCAAGGGAGACTTGGACCGTCGCGTGCGCCCCGGC AACGAGGCCGGCCCGTACGCCACAACTCCCATACGTGCCGCGGCACAAAA GTGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12231:1..1656-

>mRNA_E-siliculosus-1a_F_contig12231.1409.1 ID=mRNA_E-siliculosus-1a_F_contig12231.1409.1|Name=mRNA_E-siliculosus-1a_F_contig12231.1409.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12231:1..1656- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGGCAGCCCCCGAGGGCCCCTCTCGAGTATTTGCTACTACCACCAAGAT
CTGCACCGACGGCGGCTCCAGGCGATCTCGCGACCTGCCCTTCGACGCAC
ACCGCCGCGCCATCCTACTCGTCGGGGCTTGCCGGGACCGGTGGCCACCG
AGGTGAACGGCAGCCCCCGAGGGCCCCTCTCGAGTATTTGCTACTACCAC
CAAGATCTGCACCGACGGCGGCTCCAGGCGATCTCGCGACCTGCCCTTCG
ACGCACACCGCCGCGCCATCCTACTCGTCGGGGCTTGCCGGGACCGGTGG
CCACCGAGGTGA
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