mRNA_E-siliculosus-1a_F_contig12208.1397.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12208.1397.1
Unique NamemRNA_E-siliculosus-1a_F_contig12208.1397.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12208.1397.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 7.180e-30
Identity = 74/115 (64.35%), Postives = 81/115 (70.43%), Query Frame = 2 
Query:  122 DEEETPGGEEGLCAGEGGEGQTSEGGLYPLEEGGTETGAPAGAGGGDEEETSEEAGRPLPDEEDRRLPGAENDKWYDVWEEGSAGSGEDDESIDGMDDGGFELEGEVDVVDYDES 466
            DEEETPGG+ G+C GEG  GQTSEGGLYPL                    T EEAG+PLPDEEDRR+  + ND + DVWEEGSAGS EDD SID MDDGGFELEGE DV+DYDES
Sbjct: 1366 DEEETPGGDPGVCTGEGVGGQTSEGGLYPLXXXXXXXXXXXXXXXXXXXXTDEEAGQPLPDEEDRRVHRSGNDNFDDVWEEGSAGSDEDDASIDDMDDGGFELEGEQDVLDYDES 1480
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BLAST of mRNA_E-siliculosus-1a_F_contig12208.1397.1 vs. uniprot
Match: A0A6H5L3A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-12
Identity = 53/121 (43.80%), Postives = 58/121 (47.93%), Query Frame = 3 
Query:  126 RRKHRVARRGFAQERGAR------------------------------VKRPRGGCILWRKVAQRRGRLPGQGVETRRKRPKKRADHCPTRRTGGCLGRKTISGTTFGRKVQRAAVKTTSR 398
            R+KH+VA R FAQERGAR                              VK PR GC LWRKVAQ        G ETRRK P K ADHC  RRTGG LG+          +V RAA+K T R
Sbjct:    2 RKKHQVAIRAFAQERGARGWGRLRGRGGETRXXXXXXXXXXXXXXXXRVKHPREGCALWRKVAQ--------GWETRRKHPTKLADHCRRRRTGGSLGQ---------GEVHRAAMKETGR 105
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BLAST of mRNA_E-siliculosus-1a_F_contig12208.1397.1 vs. uniprot
Match: A0A6H5JLD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD9_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.700e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  122 DEEETPGGEEGLCAGEGGEGQTSEGGLYPLEEGGTETGAPAGAGG 256
            DEEETPGG  G+C GEGGEGQTSEGGLYPLEEGGTE GAPA  GG
Sbjct:  365 DEEETPGGHPGVCTGEGGEGQTSEGGLYPLEEGGTEMGAPAEGGG 409
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BLAST of mRNA_E-siliculosus-1a_F_contig12208.1397.1 vs. uniprot
Match: A0A6H5JQ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ87_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.900e-11
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  350 DVWEEGSAGSGEDDESIDGMDDGGFELEGEVDVVDYDES 466
            DVWEEGSAGS EDD SIDGMDD GFELEGE+DV+DYDES
Sbjct:   11 DVWEEGSAGSDEDDVSIDGMDDRGFELEGELDVLDYDES 49
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12208.1397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTC0_ECTSI7.180e-3064.35Similar to solute carrier family 35, member F4 n=1... [more]
A0A6H5L3A0_9PHAE1.200e-1243.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLD9_9PHAE1.700e-1284.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ87_9PHAE1.900e-1187.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12208contigE-siliculosus-1a_F_contig12208:3..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size342
Model size466
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12208.1397.1prot_E-siliculosus-1a_F_contig12208.1397.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12208 127..985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.528026-UTR-E-siliculosus-1a_F_contig12208:2..1261622927740.528026-UTR-E-siliculosus-1a_F_contig12208:2..126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12208 3..126 -
1696318662.2016947-UTR-E-siliculosus-1a_F_contig12208:2..1261696318662.2016947-UTR-E-siliculosus-1a_F_contig12208:2..126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12208 3..126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.5458875-CDS-E-siliculosus-1a_F_contig12208:126..1301622927740.5458875-CDS-E-siliculosus-1a_F_contig12208:126..130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12208 127..130 -
1696318662.2127903-CDS-E-siliculosus-1a_F_contig12208:126..1301696318662.2127903-CDS-E-siliculosus-1a_F_contig12208:126..130Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12208 127..130 -
1622927740.5629325-CDS-E-siliculosus-1a_F_contig12208:647..9851622927740.5629325-CDS-E-siliculosus-1a_F_contig12208:647..985Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12208 648..985 -
1696318662.2241058-CDS-E-siliculosus-1a_F_contig12208:647..9851696318662.2241058-CDS-E-siliculosus-1a_F_contig12208:647..985Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12208 648..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12208.1397.1

>prot_E-siliculosus-1a_F_contig12208.1397.1 ID=prot_E-siliculosus-1a_F_contig12208.1397.1|Name=mRNA_E-siliculosus-1a_F_contig12208.1397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
MARTAEALFLFLQQTREENPEERETTSGQVADSLEEAGGERRGGNTGWRG
GALRRRGGRGSNVRGGAVSFGGRWHRDGGACRGRGWRRGGNVRRSGPTTA
RRGGPAVAWGGKR*
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mRNA from alignment at E-siliculosus-1a_F_contig12208:3..985-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12208.1397.1 ID=mRNA_E-siliculosus-1a_F_contig12208.1397.1|Name=mRNA_E-siliculosus-1a_F_contig12208.1397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=983bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12208:3..985- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCCGAACAGCCGAAGCGCTCTTTCTTTTTCTGCAGCAAACACGGGA
GGAAAACCCAGAGGAGAGAGAGACCACGTCCGGGCAGGTGGCCGATTCTC
TTGAGGAAGCTGGTGGAGAGAGACGAGGAGGAAACACCGGGTGGCGAGGA
GGGGCTTTGCGCAGGAGAGGGGGGCGAGGGTCAAACGTCCGAGGGGGGGC
TGTATCCTTTGGAGGAAGGTGGCACAGAGACGGGGGCGCCTGCCGGGGCA
GGGGGTGGAGACGAGGAGGAAACGTCCGAAGAAGCGGGCCGACCACTGCC
CGACGAGGAGGACCGGCGGTTGCCTGGGGCGGAAAACGGTGAGGGGACGG
CAGTTGGGTTCGGTTTCGTGTCGCCGCGACAGTTGTTTACCCACGACTCA
CCCAAGAAATGCCACCCAAGAAATGATAGCTAGAAGTAACTTGGTGCCGG
GACGAAACCCGTCTGTCTGTGCATTGAACACCCCATTTCTTAAAGGTAAG
GGTGTGTCTAATCCCGTTCCGTTGCTGCGACCGTATGTGTGTTTCGAAGA
TAGGTTGTCGTTCATCCACGCCACAAAATACAAAAGAAGGGTGCGGGATA
AAGGTACTGAAGCGATTTTAACCAGCACCAAAAATGTGTTTCATCCAGCA
GACTCCAGTCCATCGACCCACGATTGTTTAGCCACGGCGAACCGACAGAC
CCCCCCGACGTCGCCATAGCGCGGTTTCGTTGTAACGCGTGAGGAACCTT
CTCTGGGGTCCCTCGTGTCGCGTGTCCATGTGTCCATCATAAACAATACG
TGTATCTGTAACACTCGATATTTTTCTGTCGTGACCGCCTCGATCTATTT
CGTAGATAAGTGGTACGACGTTTGGGAGGAAGGTTCAGCGGGCAGCGGTG
AAGACGACGAGTCGATAGACGGTATGGACGACGGCGGGTTCGAGCTGGAA
GGAGAAGTGGACGTCGTGGATTACGACGAGTCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12208:3..985-

>mRNA_E-siliculosus-1a_F_contig12208.1397.1 ID=mRNA_E-siliculosus-1a_F_contig12208.1397.1|Name=mRNA_E-siliculosus-1a_F_contig12208.1397.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12208:3..985- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCCGAACAGCCGAAGCGCTCTTTCTTTTTCTGCAGCAAACACGGGA
GGAAAACCCAGAGGAGAGAGAGACCACGTCCGGGCAGGTGGCCGATTCTC
TTGAGGAAGCTGGTGGAGAGAGACGAGGAGGAAACACCGGGTGGCGAGGA
GGGGCTTTGCGCAGGAGAGGGGGGCGAGGGTCAAACGTCCGAGGGGGGGC
TGTATCCTTTGGAGGAAGGTGGCACAGAGACGGGGGCGCCTGCCGGGGCA
GGGGGTGGAGACGAGGAGGAAACGTCCGAAGAAGCGGGCCGACCACTGCC
CGACGAGGAGGACCGGCGGTTGCCTGGGGCGGAAAACGATGGCCCGAACA
GCCGAAGCGCTCTTTCTTTTTCTGCAGCAAACACGGGAGGAAAACCCAGA
GGAGAGAGAGACCACGTCCGGGCAGGTGGCCGATTCTCTTGAGGAAGCTG
GTGGAGAGAGACGAGGAGGAAACACCGGGTGGCGAGGAGGGGCTTTGCGC
AGGAGAGGGGGGCGAGGGTCAAACGTCCGAGGGGGGGCTGTATCCTTTGG
AGGAAGGTGGCACAGAGACGGGGGCGCCTGCCGGGGCAGGGGGTGGAGAC
GAGGAGGAAACGTCCGAAGAAGCGGGCCGACCACTGCCCGACGAGGAGGA
CCGGCGGTTGCCTGGGGCGGAAAACGATAAATAA
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