mRNA_E-siliculosus-1a_F_contig122.1390.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: D8LNX4_ECTSI (ATP-dependent protease peptidase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNX4_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 7.600e-132 Identity = 208/212 (98.11%), Postives = 210/212 (99.06%), Query Frame = 1
Query: 148 MRKPAAAAVLPFGKSAESKRAHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEESE 783
MR+PAAA VLPFGKSAESKR HSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQ+DLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEESE
Sbjct: 1 MRQPAAA-VLPFGKSAESKRMHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQEDLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEESE 211
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A7S2WBX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBX0_9STRA) HSP 1 Score: 241 bits (615), Expect = 5.560e-73 Identity = 135/217 (62.21%), Postives = 165/217 (76.04%), Query Frame = 1
Query: 142 ILMRKPAAAAV-LPFGKSAESKRAHSSASSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEE-SEP 786
++MR+ A AV P G S + A A+ G HGTTILCVRK GKVV++GDGQVSQG MVVKPNA KVR++GDG VL G+AGSTADA TL+ERLE +LEEH GQL ACV LAK WRTDKYLRRLEAV+LVAD S ++TG GDVL P G++AVGSG YALAAARAL+ D+ E++A+K+M IA++LCVYTN++FT+ L+ +E SEP
Sbjct: 1 MMMRQVLARAVRAPTGLSRAAYSASPVAADGSGRHGTTILCVRKEGKVVVIGDGQVSQGSMVVKPNAKKVRRMGDG-VLVGFAGSTADAFTLLERLEERLEEHPGQLTRACVDLAKAWRTDKYLRRLEAVLLVADKDVSFELTGNGDVLEPKDGIMAVGSGGAYALAAARALADVPDMDPEDIAQKAMTIAADLCVYTNHNFTVEVLETDESRTSEP 216
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A7V2AIL4_9PROT (ATP-dependent protease subunit HslV n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2AIL4_9PROT) HSP 1 Score: 230 bits (586), Expect = 3.090e-69 Identity = 115/173 (66.47%), Postives = 140/173 (80.92%), Query Frame = 1
Query: 241 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSL 759
HGTTILCVRKNG VV+ GDGQVS GD V+K NA KVR LGDG V+AG+AG+TADA TL ERLEG+LE++ GQL ACV +AKDWRTD+YLRRLEA++ VAD++ SL +TG GDVL P GVI +GSG YALAAARAL +DD+ E++ARK+M IA+E+CVYTN + T+ L
Sbjct: 10 HGTTILCVRKNGSVVIAGDGQVSLGDTVIKGNARKVRTLGDGSVIAGFAGATADAFTLFERLEGRLEQYPGQLTRACVEMAKDWRTDRYLRRLEAMMTVADTEVSLVLTGTGDVLEPEYGVIGIGSGGNYALAAARALYDRDDMDPEQIARKAMAIAAEICVYTNTNVTLEKL 182
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A6G0WXK0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXK0_9STRA) HSP 1 Score: 231 bits (588), Expect = 3.570e-69 Identity = 121/187 (64.71%), Postives = 148/187 (79.14%), Query Frame = 1
Query: 223 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSLDVEEEESE 783
SS MHGTTILCVRKNGKVV++GDGQVS G +VKPNA KVR++ D V+AG+AGSTADA TL+ERLE KLEE+ GQL ACV LAK WRTDKYLR LEA+++V D+K S +TG GDVL P+ G+I +GSG YALAAARAL + LSAEEVAR+SM+IA+++C+YTN++F M LD E + E
Sbjct: 22 SSSPTMHGTTILCVRKNGKVVVIGDGQVSLGHTIVKPNAQKVRRINDN-VIAGFAGSTADAFTLIERLESKLEEYPGQLTRACVELAKAWRTDKYLRALEALLIVTDNKQSFTLTGNGDVLQPHDGIIGIGSGGTYALAAARALIEEPHLSAEEVARRSMKIAADICIYTNHNFVMEVLDEEAPQKE 207
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A6N6VI23_9HYPH (ATP-dependent protease subunit HslV n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VI23_9HYPH) HSP 1 Score: 229 bits (585), Expect = 5.140e-69 Identity = 117/174 (67.24%), Postives = 144/174 (82.76%), Query Frame = 1
Query: 241 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSLD 762
HGTTIL VRK GKVV+ GDGQVS GD V+K NA KVR LG G V+AG+AG+TADA+TL ERLEGKLE++ GQL ACV LAKDWRTD++LRRLEA+++VAD+ SL +TG GDVL P GG++ +GSG YALAAARAL+ +LSAEE+ARK+++IASE+CVYTNN+ T+ LD
Sbjct: 13 HGTTILTVRKGGKVVVAGDGQVSMGDTVMKGNARKVRPLGSGNVIAGFAGATADAMTLFERLEGKLEQYPGQLTRACVELAKDWRTDRFLRRLEALMIVADAHVSLVLTGNGDVLEPEGGIVGIGSGGNYALAAARALA-DTELSAEEIARKALKIASEICVYTNNNLTVEILD 185
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A1E5Q488_9PROT (ATP-dependent protease subunit HslV n=1 Tax=Magnetovibrio blakemorei TaxID=28181 RepID=A0A1E5Q488_9PROT) HSP 1 Score: 229 bits (583), Expect = 9.840e-69 Identity = 115/173 (66.47%), Postives = 145/173 (83.82%), Query Frame = 1
Query: 241 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSL 759
HGTTIL VRK+G VVM+GDGQVS G+ +VK A KVR++GDG V+AG+AG+TADA TL ERLE KLE++ QL ACV LAKDWRTD+YLR+LEA++LVAD SL +TG GDVL P+ GVIA+GSG YALAAAR L+GQD+LSAE+VAR++MEIA+++CV+TN +FT+ +L
Sbjct: 14 HGTTILNVRKDGDVVMIGDGQVSLGNTIVKGTARKVRRIGDGSVIAGFAGATADAFTLFERLEAKLEQYPNQLTRACVELAKDWRTDRYLRKLEAMMLVADKDVSLVLTGTGDVLEPDDGVIAIGSGGNYALAAARGLAGQDNLSAEQVARRAMEIAADICVFTNTNFTIETL 186
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A4D9D968_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D968_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.300e-68 Identity = 118/169 (69.82%), Postives = 137/169 (81.07%), Query Frame = 1
Query: 238 MHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHF 744
MH TTILCVRK KVVMMGDGQVSQG VVKPNA KVR+LG ++AG+AGSTAD TLMERLE KLEEH GQL ACV LAK WRTDKYLRRLEA +LVAD S ++TGLGDVL P GVIA+GSG +ALAAA+AL ++D+ AE++A K+M IA+E+CVYTNN+F
Sbjct: 1 MHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGQD-IIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNF 168
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: W7UCI7_9STRA (Heat shock protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCI7_9STRA) HSP 1 Score: 230 bits (587), Expect = 3.260e-68 Identity = 119/171 (69.59%), Postives = 139/171 (81.29%), Query Frame = 1
Query: 232 LEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHF 744
L MH TTILCVRK KVVMMGDGQVSQG VVKPNA KVR+LG+ ++AG+AGSTAD TLMERLE KLEEH GQL ACV LAK WRTDKYLRRLEA +LVAD S ++TGLGDVL P GVIA+GSG +ALAAA+AL ++D+ AE++A K+M IA+E+CVYTNN+F
Sbjct: 80 LTMHATTILCVRKGDKVVMMGDGQVSQGATVVKPNAKKVRRLGED-IIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAKAWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGVIAIGSGGTFALAAAKALLDREDMDAEQIAHKAMSIAAEICVYTNNNF 249
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: A0A2A4RY57_9HYPH (ATP-dependent protease subunit HslV n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4RY57_9HYPH) HSP 1 Score: 227 bits (578), Expect = 5.790e-68 Identity = 122/181 (67.40%), Postives = 145/181 (80.11%), Query Frame = 1
Query: 223 SSGLEMHGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLG-DGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSLD 762
SS HGTTIL VRK GKVV+ GDGQVS GD V+K NA KVR+LG DG V+ G+AG+TADA+TL ERLEGKLE++ GQL ACV LAKDWRTD+YLRRLEA+++VAD++ SL +TG GDVL P GGVI +GSG YAL+AARAL D LSAEE+ RKS+ IASE+CVYTNN+ T+ LD
Sbjct: 6 SSPPSWHGTTILTVRKGGKVVVAGDGQVSLGDTVIKGNARKVRRLGSDGMVIGGFAGATADAMTLFERLEGKLEQYPGQLTRACVELAKDWRTDRYLRRLEAMMIVADAQASLILTGNGDVLEPEGGVIGIGSGGNYALSAARALVDMD-LSAEEICRKSLGIASEICVYTNNNLTVEVLD 185
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Match: UPI00115E9A24 (ATP-dependent protease subunit HslV n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115E9A24) HSP 1 Score: 226 bits (575), Expect = 1.320e-67 Identity = 115/173 (66.47%), Postives = 138/173 (79.77%), Query Frame = 1
Query: 241 HGTTILCVRKNGKVVMMGDGQVSQGDMVVKPNATKVRKLGDGRVLAGYAGSTADALTLMERLEGKLEEHEGQLMNACVALAKDWRTDKYLRRLEAVVLVADSKFSLKVTGLGDVLAPNGGVIAVGSGQPYALAAARALSGQDDLSAEEVARKSMEIASELCVYTNNHFTMHSL 759
HGTTILCVRK GKVV+ GDGQVS G V+K NA KVR+LGDG V+ G+AG+TADA TL ERLE KLE++ GQL ACV LAKDWRTD+YLRRLEA++ VAD+ SL +TG GDVL P GVI +GSG YALAAARAL +DL AE VAR++M+IA+E+CVYTN++ + SL
Sbjct: 10 HGTTILCVRKGGKVVIAGDGQVSLGQTVIKSNARKVRRLGDGSVIGGFAGATADAFTLFERLEAKLEQYPGQLTRACVELAKDWRTDRYLRRLEAMMAVADASVSLVLTGTGDVLEPEDGVIGIGSGGNYALAAARALMTVEDLDAETVARRAMKIAAEICVYTNHNVVVESL 182 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig122.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig122.1390.1 >prot_E-siliculosus-1a_F_contig122.1390.1 ID=prot_E-siliculosus-1a_F_contig122.1390.1|Name=mRNA_E-siliculosus-1a_F_contig122.1390.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=253bp MFGLLARTRTAAVRSLATAAAGPAAGSEATLAARRGGILMRKPAAAAVLPback to top mRNA from alignment at E-siliculosus-1a_F_contig122:41334..49063- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig122.1390.1 ID=mRNA_E-siliculosus-1a_F_contig122.1390.1|Name=mRNA_E-siliculosus-1a_F_contig122.1390.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7730bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig122:41334..49063- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig122:41334..49063- >mRNA_E-siliculosus-1a_F_contig122.1390.1 ID=mRNA_E-siliculosus-1a_F_contig122.1390.1|Name=mRNA_E-siliculosus-1a_F_contig122.1390.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1518bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig122:41334..49063- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |