mRNA_E-siliculosus-1a_F_contig12184.1382.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12184.1382.1
Unique NamemRNA_E-siliculosus-1a_F_contig12184.1382.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 342 bits (878), Expect = 1.240e-118
Identity = 164/174 (94.25%), Postives = 165/174 (94.83%), Query Frame = 1 
Query:    1 MSSWYTPDRNGDWPGSSPPELNTDLRDLLLWQHVFLARLSMKTHVHVAVVEAGLRGCHKTCMMDVVFGTPKKEGDPLPILLRWEFCPTQITPGVVSEPTLA---ETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 513
            MSSWYTPDR GDWPGSSPPE NTDLRDLLLWQHVFLA L MKTHVHVAVVEAGLRGC +TCMMDVVFGTPKKEGDPLPILLRWEFCPTQ TPGVVSEPTLA   ETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC
Sbjct:    1 MSSWYTPDRYGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 174
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BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.300e-92
Identity = 134/174 (77.01%), Postives = 146/174 (83.91%), Query Frame = 1 
Query:    1 MSSWYTPDRNGDWPGSSPPELNTDLRDLLLWQHVFLARLSMKTHVHVAVVEAGLRGCHKTCMMDVVFGTPKKEGDPLPILLRWEFCPTQITPGVVSEPTLA---ETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 513
            MSSWYTP+R  DWPGSSPPE NT +R+ LLWQHVFL  L MKTHVHVAVV+AGLRGC  T MMDVVFGT KK G PLPIL+RW+FCPT ITPG+V++P+LA   ETAPCFL GV+TTVTKIAI GRIPLEWAWPNPR   LPTARRP  HLQWAIK P VQPVKRR+MLFNA C
Sbjct:    1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFNAWC 173
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BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 8.830e-66
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 1 
Query:  184 MMDVVFGTPKKEGDPLPILLRWEFCPTQITPGVVSEPTLA---ETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 513
            MMDVVFGTPKKEGDPLPIL+RWE CPT ITPG+V++P+LA   ETAPCFLDGV+TTVTKIAI GRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPV+R I+LFNACC
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFNACC 113
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BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 2.050e-58
Identity = 103/175 (58.86%), Postives = 120/175 (68.57%), Query Frame = 1 
Query:    1 MSSWYTPDRNGDWPGSSPPELNTDLRDLLLWQHVFLARLSMKTHVHVAVVEAGLRGCHKTCMMDVVFGTPKKEGDPLPILLRWEFCPTQITPGVVSEPTLA---ETAPCFLDGVMTTVTKIAIRGRIPLEWAW-PNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACC 513
            MSSWYTP+R  D PGSS  E NT +R+ LLWQHVFL  L                GC  T M+D+VFGT KK G+PLPILLRW+FCPT I PG+V++P+LA   ETAPCFLDG+++TVTKIAI GR PL+      P  G    +    P+LQ AIKLPGVQPVKRRIMLFNACC
Sbjct:    1 MSSWYTPERYADGPGSSSSEYNTAIREALLWQHVFLGGL----------------GCGTTFMVDIVFGTAKK-GEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPPNLQCAIKLPGVQPVKRRIMLFNACC 158
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BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-12
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 2 
Query:    2 CLLGTLRIGMVTGRDPRLPSSIQIYGTFFFGSTYFWRD*V 121
            CLLGTLR GM+TGRDPRLPS+IQ+ G  FFGSTYFW D V
Sbjct:   46 CLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12184.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JXU8_9PHAE1.240e-11894.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G025_ECTSI5.300e-9277.01Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KM83_9PHAE8.830e-6686.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L242_9PHAE2.050e-5858.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI1_ECTSI1.100e-1277.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12184contigE-siliculosus-1a_F_contig12184:627..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size513
Model size513
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927735.432892-CDS-E-siliculosus-1a_F_contig12184:626..11391622927735.432892-CDS-E-siliculosus-1a_F_contig12184:626..1139Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12184 627..1139 +
1696318660.2055802-CDS-E-siliculosus-1a_F_contig12184:626..11391696318660.2055802-CDS-E-siliculosus-1a_F_contig12184:626..1139Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12184 627..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12184.1382.1prot_E-siliculosus-1a_F_contig12184.1382.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12184 627..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12184.1382.1

>prot_E-siliculosus-1a_F_contig12184.1382.1 ID=prot_E-siliculosus-1a_F_contig12184.1382.1|Name=mRNA_E-siliculosus-1a_F_contig12184.1382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=171bp
MSSWYTPDRNGDWPGSSPPELNTDLRDLLLWQHVFLARLSMKTHVHVAVV
EAGLRGCHKTCMMDVVFGTPKKEGDPLPILLRWEFCPTQITPGVVSEPTL
AETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQW
AIKLPGVQPVKRRIMLFNACC
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mRNA from alignment at E-siliculosus-1a_F_contig12184:627..1139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12184.1382.1 ID=mRNA_E-siliculosus-1a_F_contig12184.1382.1|Name=mRNA_E-siliculosus-1a_F_contig12184.1382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=513bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12184:627..1139+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTTCTTGGTACACTCCGGATAGGAATGGTGACTGGCCGGGATCCTC
GCCTCCCGAGCTCAATACAGATCTACGGGACCTTCTTCTTTGGCAGCACG
TATTTTTGGCGCGATTGAGTATGAAAACCCATGTACATGTTGCGGTGGTG
GAAGCTGGGCTGAGAGGTTGCCACAAAACGTGCATGATGGACGTAGTGTT
TGGTACTCCCAAGAAGGAGGGGGACCCATTGCCGATCCTGTTGCGGTGGG
AATTTTGCCCGACGCAGATCACTCCGGGTGTGGTTTCGGAGCCGACGCTT
GCAGAAACAGCACCTTGCTTTCTGGACGGTGTCATGACGACGGTGACTAA
AATCGCCATACGCGGACGTATCCCTCTCGAGTGGGCCTGGCCAAACCCTC
GGGCGGGACGACTGCCTACGGCACGACGGCCCCTGCCTCATCTACAATGG
GCAATCAAGTTACCCGGGGTACAGCCAGTCAAGCGTCGAATCATGTTGTT
CAACGCATGCTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12184:627..1139+

>mRNA_E-siliculosus-1a_F_contig12184.1382.1 ID=mRNA_E-siliculosus-1a_F_contig12184.1382.1|Name=mRNA_E-siliculosus-1a_F_contig12184.1382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12184:627..1139+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTTCTTGGTACACTCCGGATAGGAATGGTGACTGGCCGGGATCCTC
GCCTCCCGAGCTCAATACAGATCTACGGGACCTTCTTCTTTGGCAGCACG
TATTTTTGGCGCGATTGAGTATGAAAACCCATGTACATGTTGCGGTGGTG
GAAGCTGGGCTGAGAGGTTGCCACAAAACGTGCATGATGGACGTAGTGTT
TGGTACTCCCAAGAAGGAGGGGGACCCATTGCCGATCCTGTTGCGGTGGG
AATTTTGCCCGACGCAGATCACTCCGGGTGTGGTTTCGGAGCCGACGCTT
GCAGAAACAGCACCTTGCTTTCTGGACGGTGTCATGACGACGGTGACTAA
AATCGCCATACGCGGACGTATCCCTCTCGAGTGGGCCTGGCCAAACCCTC
GGGCGGGACGACTGCCTACGGCACGACGGCCCCTGCCTCATCTACAATGG
GCAATCAAGTTACCCGGGGTACAGCCAGTCAAGCGTCGAATCATGTTGTT
CAACGCATGCTGCATGTCTTCTTGGTACACTCCGGATAGGAATGGTGACT
GGCCGGGATCCTCGCCTCCCGAGCTCAATACAGATCTACGGGACCTTCTT
CTTTGGCAGCACGTATTTTTGGCGCGATTGAGTATGAAAACCCATGTACA
TGTTGCGGTGGTGGAAGCTGGGCTGAGAGGTTGCCACAAAACGTGCATGA
TGGACGTAGTGTTTGGTACTCCCAAGAAGGAGGGGGACCCATTGCCGATC
CTGTTGCGGTGGGAATTTTGCCCGACGCAGATCACTCCGGGTGTGGTTTC
GGAGCCGACGCTTGCAGAAACAGCACCTTGCTTTCTGGACGGTGTCATGA
CGACGGTGACTAAAATCGCCATACGCGGACGTATCCCTCTCGAGTGGGCC
TGGCCAAACCCTCGGGCGGGACGACTGCCTACGGCACGACGGCCCCTGCC
TCATCTACAATGGGCAATCAAGTTACCCGGGGTACAGCCAGTCAAGCGTC
GAATCATGTTGTTCAACGCATGCTGC
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