mRNA_E-siliculosus-1a_F_contig12166.1378.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12166.1378.1
Unique NamemRNA_E-siliculosus-1a_F_contig12166.1378.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12166.1378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12166contigE-siliculosus-1a_F_contig12166:26..812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size192
Model size228
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12166.1378.1prot_E-siliculosus-1a_F_contig12166.1378.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12166 61..812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.7814834-UTR-E-siliculosus-1a_F_contig12166:25..601622927734.7814834-UTR-E-siliculosus-1a_F_contig12166:25..60Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12166 26..60 -
1696318659.8244603-UTR-E-siliculosus-1a_F_contig12166:25..601696318659.8244603-UTR-E-siliculosus-1a_F_contig12166:25..60Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12166 26..60 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.7921329-CDS-E-siliculosus-1a_F_contig12166:60..1001622927734.7921329-CDS-E-siliculosus-1a_F_contig12166:60..100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12166 61..100 -
1696318659.840724-CDS-E-siliculosus-1a_F_contig12166:60..1001696318659.840724-CDS-E-siliculosus-1a_F_contig12166:60..100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12166 61..100 -
1622927734.806043-CDS-E-siliculosus-1a_F_contig12166:660..8121622927734.806043-CDS-E-siliculosus-1a_F_contig12166:660..812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12166 661..812 -
1696318659.8511791-CDS-E-siliculosus-1a_F_contig12166:660..8121696318659.8511791-CDS-E-siliculosus-1a_F_contig12166:660..812Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12166 661..812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12166.1378.1

>prot_E-siliculosus-1a_F_contig12166.1378.1 ID=prot_E-siliculosus-1a_F_contig12166.1378.1|Name=mRNA_E-siliculosus-1a_F_contig12166.1378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
WDGVKQEGEEFPELWVQSLGWWHQTREERDTASGVPHSRPRPSDPFYSFR
RFPEQCLPRTVKH*
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mRNA from alignment at E-siliculosus-1a_F_contig12166:26..812-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12166.1378.1 ID=mRNA_E-siliculosus-1a_F_contig12166.1378.1|Name=mRNA_E-siliculosus-1a_F_contig12166.1378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=787bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12166:26..812- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGGACGGGGTCAAACAAGAAGGGGAGGAGTTTCCGGAGCTCTGGGTTCA
AAGTCTTGGGTGGTGGCATCAAACACGAGAGGAGCGTGATACTGCAAGCG
GGGTACCGCACTCGCGCCCTCGCCCCTCCGACCCGTTTTATTCCTTTCGT
CGGTGAGTTGAGTTCCCGATTTGTTCTCTGCACCTCGGGCTTCCTTTGCG
GTACACGCTGGTACACTTCCTTTTAGTCGAGGCGTGCCCAGGTGTTCATG
CCATCTGGAAAGAATGTCGCGGCCATCTGTACGATGTATTTTAACTTCCA
ATTACCGACAAACGCTCTGTGTGAGCATGTAGCTACGCTGTTCGTGTCCC
CGCTGTCTTTTCCAAATCTCCGAGCAGCTGTATCCCAACATCCACGTGCG
TTCGCGCCGGCGGGAACGCGGGAAGCGCATTTAGCTAATAGAGAGACGGC
GGTCTACTTATTCCGAAAGCTTGTCTCACGCAGTTCATCGACCACGTAGT
CTATTGCACTGTGCACAGCAGTGCACAGCTTTCAGACTGGCATAGCAGGG
CGTCTTTTGCAGTCTGCTGGTTGCACCTGTTGTCAATTCTCCAGCATTCT
CCCTTGATCATTGGTGATCGAGAGGTGCCACGACTCCAAATCGCAGGCAG
GTTGGCGGGGTGTTTCGGAATTGAAATCGCTGAGACCGTGTCGCCAAATC
AACTCCGTGCAGGTTCCCTGAGCAATGTCTTCCACGGACCGTGAAGCACT
GATTGCCCTGTTTCGTTCGACCGGCGGGGCTGAATGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12166:26..812-

>mRNA_E-siliculosus-1a_F_contig12166.1378.1 ID=mRNA_E-siliculosus-1a_F_contig12166.1378.1|Name=mRNA_E-siliculosus-1a_F_contig12166.1378.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12166:26..812- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGGACGGGGTCAAACAAGAAGGGGAGGAGTTTCCGGAGCTCTGGGTTCA
AAGTCTTGGGTGGTGGCATCAAACACGAGAGGAGCGTGATACTGCAAGCG
GGGTACCGCACTCGCGCCCTCGCCCCTCCGACCCGTTTTATTCCTTTCGT
CGTGGGACGGGGTCAAACAAGAAGGGGAGGAGTTTCCGGAGCTCTGGGTT
CAAAGTCTTGGGTGGTGGCATCAAACACGAGAGGAGCGTGATACTGCAAG
CGGGGTACCGCACTCGCGCCCTCGCCCCTCCGACCCGTTTTATTCCTTTC
GTCGGTTCCCTGAGCAATGTCTTCCACGGACCGTGAAGCACTGAGTTCCC
TGAGCAATGTCTTCCACGGACCGTGAAGCACTGA
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