mRNA_E-siliculosus-1a_F_contig1216.1375.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1216.1375.1
Unique NamemRNA_E-siliculosus-1a_F_contig1216.1375.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 6.010e-27
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
            ASHEGHVDTV+VLLRYQAQIDQRNRGQETPLHLACRQSHA VVRLLLENGADPR
Sbjct:  125 ASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPR 178          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: L1IFD5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFD5_GUITC)

HSP 1 Score: 55.1 bits (131), Expect = 1.550e-8
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
            A+H G VDTV +LLR  A ID++N    T LH+AC + +  +V +LL +GAD
Sbjct:   12 AAHVGDVDTVRILLRQGANIDEKNYDGRTVLHIACAEGNYRMVEVLLNHGAD 63          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: UPI001C685A90 (protein phosphatase 1 regulatory subunit 27 n=1 Tax=Tyto alba TaxID=56313 RepID=UPI001C685A90)

HSP 1 Score: 52.0 bits (123), Expect = 8.510e-7
Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            G++D V +L++Y A I QR+    TPLH+AC   HA + R LL  GA P
Sbjct:   74 GNLDCVELLVKYGADIHQRDANGWTPLHMACSDGHAHIARYLLTLGASP 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: C9SB95_VERA1 (Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID=C9SB95_VERA1)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query:    1 ASHEGHVDTVNVLLRYQA--QIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            AS  G VD V +LL   A   I+   R + TPLH+AC   HA +VRLLL +GADP
Sbjct:  807 ASRYGPVDIVQLLLENHAVDTINDTVREEITPLHIACMNGHADIVRLLLSHGADP 861          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A816UPZ7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816UPZ7_9BILA)

HSP 1 Score: 52.0 bits (123), Expect = 2.150e-6
Identity = 23/61 (37.70%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 ASHEGHVDTVNVLLRYQAQIDQRNRGQ---------ETPLHLACRQSHASVVRLLLENGAD 156
            A+ EGH+D V VL+R+ A +++  +GQ         +TPL +AC ++H +++R L+E+GA+
Sbjct:   10 AAEEGHLDVVEVLIRHGADVNRSPKGQVARDLHIENQTPLLMACTKNHETIIRHLIESGAN 70          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A852PMC9_9PASS (PPR27 phosphatase (Fragment) n=8 Tax=Passeriformes TaxID=9126 RepID=A0A852PMC9_9PASS)

HSP 1 Score: 50.8 bits (120), Expect = 2.360e-6
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            G++D V +L++Y A I QR+    TPLH+AC   +A + R LL  GA P
Sbjct:   74 GNLDCVKLLVKYGADIHQRDENGWTPLHMACSDGYADIARYLLSLGASP 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: UPI001F204A08 (ankyrin repeat domain-containing protein n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F204A08)

HSP 1 Score: 51.2 bits (121), Expect = 3.150e-6
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   19 VDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            V+ V ++L++ A ID  +  + TPL LA    HA VVRLLLE GADP
Sbjct:  123 VEMVRLMLQHHAYIDAESPNKSTPLMLAAHYGHADVVRLLLEEGADP 169          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A3Q1HK97_ANATE (Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HK97_ANATE)

HSP 1 Score: 50.8 bits (120), Expect = 3.330e-6
Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
            A+ EG VDTV  L+R+ A ++  ++    PLHLA ++ H  VV+L++E  A+P+
Sbjct:   79 AAREGFVDTVRALMRHGADVNVADQLGNLPLHLAAKEGHLEVVKLVIEQTANPQ 132          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A851DEU4_TODME (PPR27 phosphatase (Fragment) n=3 Tax=Coraciiformes TaxID=8936 RepID=A0A851DEU4_TODME)

HSP 1 Score: 50.1 bits (118), Expect = 4.650e-6
Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            G++D V +L+RY A I Q++    TPLH+AC   +A + R L+  GA P
Sbjct:   74 GNLDCVKLLVRYGADIHQKDENGWTPLHMACSDGYADIARYLISLGASP 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A7L0EL76_TROML (PPR27 phosphatase (Fragment) n=28 Tax=Neognathae TaxID=8825 RepID=A0A7L0EL76_TROML)

HSP 1 Score: 49.7 bits (117), Expect = 5.710e-6
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 1
Query:   13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
            G +D V +L++Y A I QR+    TPLH+AC   H  + R L+  GA P
Sbjct:   74 GSLDCVKLLVKYGADIHQRDENGWTPLHMACSDGHPDIARYLISIGASP 122          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Z2_ECTSI6.010e-2796.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1IFD5_GUITC1.550e-848.08Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
UPI001C685A908.510e-746.94protein phosphatase 1 regulatory subunit 27 n=1 Ta... [more]
C9SB95_VERA11.430e-650.91Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID... [more]
A0A816UPZ7_9BILA2.150e-637.70Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A852PMC9_9PASS2.360e-644.90PPR27 phosphatase (Fragment) n=8 Tax=Passeriformes... [more]
UPI001F204A083.150e-651.06ankyrin repeat domain-containing protein n=1 Tax=H... [more]
A0A3Q1HK97_ANATE3.330e-640.74Cyclin-dependent kinase inhibitor 2C (p18, inhibit... [more]
A0A851DEU4_TODME4.650e-642.86PPR27 phosphatase (Fragment) n=3 Tax=Coraciiformes... [more]
A0A7L0EL76_TROML5.710e-642.86PPR27 phosphatase (Fragment) n=28 Tax=Neognathae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1216contigE-siliculosus-1a_F_contig1216:19861..20025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size165
Model size165
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7G7Z2
Seed ortholog evalue3.2e-22
Seed ortholog score110.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.5372462-CDS-E-siliculosus-1a_F_contig1216:19860..200251622927734.5372462-CDS-E-siliculosus-1a_F_contig1216:19860..20025Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1216 19861..20025 -
1696318659.6831806-CDS-E-siliculosus-1a_F_contig1216:19860..200251696318659.6831806-CDS-E-siliculosus-1a_F_contig1216:19860..20025Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1216 19861..20025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1216.1375.1prot_E-siliculosus-1a_F_contig1216.1375.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1216 19861..20025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1216.1375.1

>prot_E-siliculosus-1a_F_contig1216.1375.1 ID=prot_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENG
ADPR*
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mRNA from alignment at E-siliculosus-1a_F_contig1216:19861..20025-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1216.1375.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:19861..20025- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCTCACACGAGGGTCATGTAGACACCGTAAACGTACTCCTGCGCTACCA AGCACAAATCGACCAAAGGAACAGGGGCCAGGAGACCCCGCTTCACTTAG CTTGTCGGCAAAGCCACGCGTCGGTGGTCCGCCTGCTGCTGGAAAACGGA GCAGACCCGAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1216:19861..20025-

>mRNA_E-siliculosus-1a_F_contig1216.1375.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:19861..20025- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCTCACACGAGGGTCATGTAGACACCGTAAACGTACTCCTGCGCTACCA
AGCACAAATCGACCAAAGGAACAGGGGCCAGGAGACCCCGCTTCACTTAG
CTTGTCGGCAAAGCCACGCGTCGGTGGTCCGCCTGCTGCTGGAAAACGGA
GCAGACCCGAGGTAAGCCTCACACGAGGGTCATGTAGACACCGTAAACGT
ACTCCTGCGCTACCAAGCACAAATCGACCAAAGGAACAGGGGCCAGGAGA
CCCCGCTTCACTTAGCTTGTCGGCAAAGCCACGCGTCGGTGGTCCGCCTG
CTGCTGGAAAACGGAGCAGACCCGAGGTAA
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