mRNA_E-siliculosus-1a_F_contig1216.1375.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI) HSP 1 Score: 110 bits (274), Expect = 6.010e-27 Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query: 1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
ASHEGHVDTV+VLLRYQAQIDQRNRGQETPLHLACRQSHA VVRLLLENGADPR
Sbjct: 125 ASHEGHVDTVSVLLRYQAQIDQRNRGQETPLHLACRQSHAPVVRLLLENGADPR 178
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: L1IFD5_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFD5_GUITC) HSP 1 Score: 55.1 bits (131), Expect = 1.550e-8 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query: 1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGAD 156
A+H G VDTV +LLR A ID++N T LH+AC + + +V +LL +GAD
Sbjct: 12 AAHVGDVDTVRILLRQGANIDEKNYDGRTVLHIACAEGNYRMVEVLLNHGAD 63
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: UPI001C685A90 (protein phosphatase 1 regulatory subunit 27 n=1 Tax=Tyto alba TaxID=56313 RepID=UPI001C685A90) HSP 1 Score: 52.0 bits (123), Expect = 8.510e-7 Identity = 23/49 (46.94%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
G++D V +L++Y A I QR+ TPLH+AC HA + R LL GA P
Sbjct: 74 GNLDCVELLVKYGADIHQRDANGWTPLHMACSDGHAHIARYLLTLGASP 122
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: C9SB95_VERA1 (Ankyrin-1 n=2 Tax=Verticillium TaxID=1036719 RepID=C9SB95_VERA1) HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6 Identity = 28/55 (50.91%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 1 ASHEGHVDTVNVLLRYQA--QIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
AS G VD V +LL A I+ R + TPLH+AC HA +VRLLL +GADP
Sbjct: 807 ASRYGPVDIVQLLLENHAVDTINDTVREEITPLHIACMNGHADIVRLLLSHGADP 861
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A816UPZ7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816UPZ7_9BILA) HSP 1 Score: 52.0 bits (123), Expect = 2.150e-6 Identity = 23/61 (37.70%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 1 ASHEGHVDTVNVLLRYQAQIDQRNRGQ---------ETPLHLACRQSHASVVRLLLENGAD 156
A+ EGH+D V VL+R+ A +++ +GQ +TPL +AC ++H +++R L+E+GA+
Sbjct: 10 AAEEGHLDVVEVLIRHGADVNRSPKGQVARDLHIENQTPLLMACTKNHETIIRHLIESGAN 70
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A852PMC9_9PASS (PPR27 phosphatase (Fragment) n=8 Tax=Passeriformes TaxID=9126 RepID=A0A852PMC9_9PASS) HSP 1 Score: 50.8 bits (120), Expect = 2.360e-6 Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
G++D V +L++Y A I QR+ TPLH+AC +A + R LL GA P
Sbjct: 74 GNLDCVKLLVKYGADIHQRDENGWTPLHMACSDGYADIARYLLSLGASP 122
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: UPI001F204A08 (ankyrin repeat domain-containing protein n=1 Tax=Hydrogenophaga sp. SL48 TaxID=2806347 RepID=UPI001F204A08) HSP 1 Score: 51.2 bits (121), Expect = 3.150e-6 Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query: 19 VDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
V+ V ++L++ A ID + + TPL LA HA VVRLLLE GADP
Sbjct: 123 VEMVRLMLQHHAYIDAESPNKSTPLMLAAHYGHADVVRLLLEEGADP 169
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A3Q1HK97_ANATE (Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HK97_ANATE) HSP 1 Score: 50.8 bits (120), Expect = 3.330e-6 Identity = 22/54 (40.74%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 1 ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADPR 162
A+ EG VDTV L+R+ A ++ ++ PLHLA ++ H VV+L++E A+P+
Sbjct: 79 AAREGFVDTVRALMRHGADVNVADQLGNLPLHLAAKEGHLEVVKLVIEQTANPQ 132
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A851DEU4_TODME (PPR27 phosphatase (Fragment) n=3 Tax=Coraciiformes TaxID=8936 RepID=A0A851DEU4_TODME) HSP 1 Score: 50.1 bits (118), Expect = 4.650e-6 Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
G++D V +L+RY A I Q++ TPLH+AC +A + R L+ GA P
Sbjct: 74 GNLDCVKLLVRYGADIHQKDENGWTPLHMACSDGYADIARYLISLGASP 122
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Match: A0A7L0EL76_TROML (PPR27 phosphatase (Fragment) n=28 Tax=Neognathae TaxID=8825 RepID=A0A7L0EL76_TROML) HSP 1 Score: 49.7 bits (117), Expect = 5.710e-6 Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 1
Query: 13 GHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGADP 159
G +D V +L++Y A I QR+ TPLH+AC H + R L+ GA P
Sbjct: 74 GSLDCVKLLVKYGADIHQRDENGWTPLHMACSDGHPDIARYLISIGASP 122 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1216.1375.1 >prot_E-siliculosus-1a_F_contig1216.1375.1 ID=prot_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp ASHEGHVDTVNVLLRYQAQIDQRNRGQETPLHLACRQSHASVVRLLLENGback to top mRNA from alignment at E-siliculosus-1a_F_contig1216:19861..20025- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1216.1375.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:19861..20025- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1216:19861..20025- >mRNA_E-siliculosus-1a_F_contig1216.1375.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1375.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1375.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:19861..20025- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |