mRNA_E-siliculosus-1a_F_contig12159.1371.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12159.1371.1
Unique NamemRNA_E-siliculosus-1a_F_contig12159.1371.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: D7FJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-15
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   67 DHRLHEDFVAQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVWGR 219
            + RLHEDFVAQVVT ALLH AN+IAA P+N  G H SI CKCTR AR  GR
Sbjct:   73 EDRLHEDFVAQVVTSALLHTANNIAAHPVNEVGKHESIVCKCTRKARACGR 123
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.490e-15
Identity = 35/50 (70.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   64 GDHRLHEDFVAQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            G  RL EDF+ QVVTPALLHAANDIAALP+N  GTH +I CK TR +R W
Sbjct:  105 GPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAW 154
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.910e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   64 GDHRLHEDFVAQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            G  RL +DF+ QVVTPALLHAANDIAALP+N  GTH +I CK TR +R W
Sbjct:  362 GPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAW 411
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: D7FUZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.390e-13
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   64 GDHRLHEDFVAQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            G  RL EDF+ QVVTPALL AANDIAALP+N  GTH +I CK TR +R W
Sbjct:  395 GPERLKEDFLGQVVTPALLQAANDIAALPVNEIGTHETIVCKVTRKSRAW 444
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-13
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   64 GDHRLHEDFVAQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            G  RL EDF+ QVVTPALLHAANDIAALP+N  GTH +I CK  R ++ W
Sbjct:  212 GPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIRKSKAW 261
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5L779_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L779_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.980e-11
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:   96 SGRHAGSTARRERHRRSPDQWQWHTREHRVQVHEEREGVGQ 218
            +GRHAGSTARRERH R P Q  W TREHRVQVHEE EG GQ
Sbjct:   20 AGRHAGSTARRERHSRPPGQRDWQTREHRVQVHEEGEGAGQ 60
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KKM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKM5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-10
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   97 QVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            QVVTPALLHAANDIAALP+N  GTH +I CK TR +R W
Sbjct:    7 QVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAW 45
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KHD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.510e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  100 VVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVW 213
            VVTPALLHAANDIAALP+N  GTH +I CK TR +R W
Sbjct:  121 VVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAW 158
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KA09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA09_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.100e-8
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   94 AQVVTPALLHAANDIAALPINGSGTHGSIACKCTRNARVWGR 219
            + VVTPALLHAA DIAALP+   G+  S+ CKCTR AR W R
Sbjct:  107 SSVVTPALLHAAKDIAALPVAEIGSLESVVCKCTRKARAWAR 148
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BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Match: A0A6H5KNB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB4_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 8.460e-6
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = -2 
Query:   99 LPHTLAFLVHLHAMLPCVPLPLIGRAAMSFAACSRAGVTT 218
            LPH LAFL HL   L C P+   G AA+SFAACS AGVTT
Sbjct:   50 LPHALAFLPHLQTTLSCAPIFTTGSAAISFAACSSAGVTT 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12159.1371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FJV6_ECTSI2.500e-1570.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF40_9PHAE4.490e-1570.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R4_9PHAE2.910e-1468.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ7_ECTSI1.390e-1368.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR20_9PHAE1.570e-1366.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L779_9PHAE2.980e-1178.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKM5_9PHAE1.160e-1074.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD1_9PHAE6.510e-1073.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA09_9PHAE1.100e-864.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNB4_9PHAE8.460e-665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12159contigE-siliculosus-1a_F_contig12159:629..1226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size219
Model size221
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.0596786-CDS-E-siliculosus-1a_F_contig12159:629..7491622927734.0596786-CDS-E-siliculosus-1a_F_contig12159:629..749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12159 630..749 -
1696318659.400634-CDS-E-siliculosus-1a_F_contig12159:629..7491696318659.400634-CDS-E-siliculosus-1a_F_contig12159:629..749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12159 630..749 -
1622927734.0733316-CDS-E-siliculosus-1a_F_contig12159:1127..12261622927734.0733316-CDS-E-siliculosus-1a_F_contig12159:1127..1226Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12159 1128..1226 -
1696318659.4094572-CDS-E-siliculosus-1a_F_contig12159:1127..12261696318659.4094572-CDS-E-siliculosus-1a_F_contig12159:1127..1226Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12159 1128..1226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12159.1371.1prot_E-siliculosus-1a_F_contig12159.1371.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12159 630..1226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12159.1371.1

>prot_E-siliculosus-1a_F_contig12159.1371.1 ID=prot_E-siliculosus-1a_F_contig12159.1371.1|Name=mRNA_E-siliculosus-1a_F_contig12159.1371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
ETWSGDSPRRTWRQYARTCPRGDHRLHEDFVAQVVTPALLHAANDIAALP
INGSGTHGSIACKCTRNARVWGR
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mRNA from alignment at E-siliculosus-1a_F_contig12159:629..1226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12159.1371.1 ID=mRNA_E-siliculosus-1a_F_contig12159.1371.1|Name=mRNA_E-siliculosus-1a_F_contig12159.1371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=598bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12159:629..1226- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGACATGGTCTGGTGATTCACCAAGGCGCACATGGCGTCAATACGCCAG
GACCTGTCCGAGAGGAGACCATCGGCTACACGAGGACTTCGTGGCTCAGG
TAATTTATTGTTTCCATCTTGGTTAGCCCCCCTCAACTTTTTTTCTTCAC
ACCTCTGTACACGATCGTAGTTCAAACCCATCGCTTGTTCCGCGTCGCCA
CGAGACGAAGTCGCATATGAGCATATGTGAGGAAATACAACATTTCGCCC
TACTGACGTTGTAAGAAAACACCCCAGCGTGCAGCAGGAAAATAATAAGA
CGAGAATATACGACGCCGGAGCATGTACAAAACGTTTCGATTGCATGGCA
GGTAGCATCGGTAGGAAGCAGCAGCACGGTGCACACACTGCACCGCTACA
CATGTCTCCACATGCGTACATTCAGCAGCACCTTTCCTCCCCCCCCCTCT
TCCTGCTGACGTCATGTTGTACACCAGGTCGTCACGCCGGCTCTACTGCA
CGCCGCGAACGACATCGCCGCTCTCCCGATCAATGGCAGTGGCACACACG
GGAGCATCGCGTGCAAGTGCACGAGGAACGCGAGGGTGTGGGGCAGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12159:629..1226-

>mRNA_E-siliculosus-1a_F_contig12159.1371.1 ID=mRNA_E-siliculosus-1a_F_contig12159.1371.1|Name=mRNA_E-siliculosus-1a_F_contig12159.1371.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12159:629..1226- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGACATGGTCTGGTGATTCACCAAGGCGCACATGGCGTCAATACGCCAG
GACCTGTCCGAGAGGAGACCATCGGCTACACGAGGACTTCGTGGCTCAGG
AGACATGGTCTGGTGATTCACCAAGGCGCACATGGCGTCAATACGCCAGG
ACCTGTCCGAGAGGAGACCATCGGCTACACGAGGACTTCGTGGCTCAGGT
CGTCACGCCGGCTCTACTGCACGCCGCGAACGACATCGCCGCTCTCCCGA
TCAATGGCAGTGGCACACACGGGAGCATCGCGTGCAAGTGCACGAGGAAC
GCGAGGGTGTGGGGCAGGGTCGTCACGCCGGCTCTACTGCACGCCGCGAA
CGACATCGCCGCTCTCCCGATCAATGGCAGTGGCACACACGGGAGCATCG
CGTGCAAGTGCACGAGGAACGCGAGGGTGTGGGGCAGG
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