mRNA_E-siliculosus-1a_F_contig1212.1352.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1212.1352.1 vs. uniprot
Match: A0A6H5KY55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY55_9PHAE) HSP 1 Score: 586 bits (1510), Expect = 6.670e-199 Identity = 379/497 (76.26%), Postives = 390/497 (78.47%), Query Frame = 1
Query: 1 REGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRYGPLKHYVHCLVMILKRPATLGADKGSYEKLRKLYNGLDIAGPDIEAAEDMDMARLCNHQFCIGMAWIHQEKMLKMKRAXXXXXXXXXXXXXXXXXXXGRGADGRLPGGALGPVACVNEEGAATSTPGDG-----------SGXXXXXXXXXXXXPHLPSPGRGGGNRIDHFPQAAAAXXXXXETGAADAGDLYSTSPFPQEQSPLPHHAPLSQCRLDDPVAAAPFDGTGASMFPPKQEGTEPFPQALGGSAGGGAVSPDMFPQGWTWNDDLQQGSHQQQRSLGRGDLAALHPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNAAGPTVAA--GAAAPQGMEGTEMPAELFEFAQNKVRQQQQQESLGHRDQFPPLQELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPGG--AGGEGDSLHNILFSSGEE 1446
RE LKNSAG LYIRAAMQFMRLPLKT+P EALKSTIVLT+IICQVPGMVRYGPLKHYVHCLVM+LKRPA LG DKGSYEKLRKLYN LDIAGPDIEAAEDMDMA LC HQFC GMAWIHQEKM+KMKRA XXXXX G GA G L GGALGPVACVNE GAATSTP + XXXXXXXXXXXXPHLPSPG NRIDHFP AAAA E GA GDLY+T PFPQEQSPLPHHAPLSQCR+DDPVAAAPFDGTGASMFPPKQ GTEPFPQA GGSAGGG S DMFPQGW WND LQQGSHQQQRSLGRGDLA LHP G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GAAA QG+EGTEMP ELFEFAQNKVRQQQQQESL QELLG+D HDDSRSVPEI MDSDAEEFTLV G AGGEG+SLH +LFS GEE
Sbjct: 443 RERLKNSAGGLYIRAAMQFMRLPLKTNPAEALKSTIVLTDIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGGDKGSYEKLRKLYNVLDIAGPDIEAAEDMDMAMLCKHQFCNGMAWIHQEKMIKMKRAQDAAEAAXXXXXTTGTAVPGLGAGGGLSGGALGPVACVNEGGAATSTPXXXXXXXXXXXXXXTXXXXXXXXXXXXXPHLPSPGGXXXNRIDHFPHAAAAAEAAAEVGAG-GGDLYATPPFPQEQSPLPHHAPLSQCRVDDPVAAAPFDGTGASMFPPKQGGTEPFPQARGGSAGGGDASADMFPQGWIWNDYLQQGSHQQQRSLGRGDLATLHPRGGPSAAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAQQGVEGTEMPVELFEFAQNKVRQQQQQESL---------QELLGMDEHDDSRSVPEIGVMDSDAEEFTLVSAGLGAGGEGESLHRLLFSPGEE 929
BLAST of mRNA_E-siliculosus-1a_F_contig1212.1352.1 vs. uniprot
Match: D8LBT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT4_ECTSI) HSP 1 Score: 477 bits (1228), Expect = 1.010e-159 Identity = 315/495 (63.64%), Postives = 322/495 (65.05%), Query Frame = 1
Query: 1 REGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRYGPLKHYVHCLVMILKRPATLGADKGSYEKLRKLYNGLDIAGPDIEAAEDMDMARLCNHQFCIGMAWIHQEKMLKMKRAXXXXXXXXXXXXXXXXXXXGRGADGRLPGGALGPVACVNEEGAATSTP------------GDGSGXXXXXXXXXXXXPHLPSPGRGGGNRIDHFPQAAAAXXXXXETGAADAGDLYSTSPFPQEQSPLPHHAPLSQCRLDDPVAAAPFDGTGASMFPPKQEGTEPFPQALGGSAGGGAVSPDMFPQGWTWNDDLQQGSHQQQRSLGRGDLAALHPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNAAGPTVAAGAAAPQGMEGTEMPAELFEFAQNKVRQQQQQESLGHRDQFPPLQELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPG-GAGGEGDSLHNILFSSGEE 1446
REGLKNSAGALYIRAAMQFMRLPLKTDPVEALKST+VLT+IICQVPGMVRYGPLKHYVHCLVM+LKRPA LG DKGSYEKLRKLYN LDIAGP+IEAAEDMDMA LC HQFC GMAWIHQEKMLK+KRA XXXXXXXXXXXXXXXX G GA G LPGGALGPVACVNEEGAATSTP GDGS XXXXXXXXXXXX HLPSP RIDHFPQ XXXXX A GDLYST PFPQEQSPLPHHAPLSQCRLDDP+AAAPFDGTGASMFPPKQEGTEPF PQGMEGTEMPAELFEFAQNK ELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPG GAGGEGDSLH+ILFS GEE
Sbjct: 313 REGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTVVLTKIICQVPGMVRYGPLKHYVHCLVMMLKRPAILGVDKGSYEKLRKLYNSLDIAGPNIEAAEDMDMAMLCKHQFCNGMAWIHQEKMLKVKRAQAXXXXXXXXXXXXXXXXPGLGAGGGLPGGALGPVACVNEEGAATSTPRGNGSSARGLAGGDGSXXXXXXXXXXXXXXHLPSPXXXXXXRIDHFPQXXXXXXXXXXXXXA-GGDLYSTPPFPQEQSPLPHHAPLSQCRLDDPLAAAPFDGTGASMFPPKQEGTEPF------------------------------------------------------------------------------------------------------------PQGMEGTEMPAELFEFAQNK--------------------ELLGVDAHDDSRSVPEIAAMDSDAEEFTLVPGAGAGGEGDSLHSILFSPGEE 678 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1212.1352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1212.1352.1 >prot_E-siliculosus-1a_F_contig1212.1352.1 ID=prot_E-siliculosus-1a_F_contig1212.1352.1|Name=mRNA_E-siliculosus-1a_F_contig1212.1352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=483bp REGLKNSAGALYIRAAMQFMRLPLKTDPVEALKSTIVLTEIICQVPGMVRback to top mRNA from alignment at E-siliculosus-1a_F_contig1212:497..2761+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1212.1352.1 ID=mRNA_E-siliculosus-1a_F_contig1212.1352.1|Name=mRNA_E-siliculosus-1a_F_contig1212.1352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2265bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1212:497..2761+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1212:497..2761+ >mRNA_E-siliculosus-1a_F_contig1212.1352.1 ID=mRNA_E-siliculosus-1a_F_contig1212.1352.1|Name=mRNA_E-siliculosus-1a_F_contig1212.1352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2898bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1212:497..2761+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |