mRNA_E-siliculosus-1a_F_contig12114.1351.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12114.1351.1
Unique NamemRNA_E-siliculosus-1a_F_contig12114.1351.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A3T1DVJ3_9GAMM (Aldedh domain-containing protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=A0A3T1DVJ3_9GAMM)

HSP 1 Score: 280 bits (717), Expect = 2.010e-93
Identity = 137/145 (94.48%), Postives = 141/145 (97.24%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSIKT+NP+NGETLETYALMSSAEAKQVVD CYEAFLDWRLESLESRAKTVKAIGQALQ HK+ELADLMVKEMGKLPSQA QEVDLCTGICDYTAEHGPKKLADEERQP NGERGFVTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSIKTINPTNGETLETYALMSSAEAKQVVDACYEAFLDWRLESLESRAKTVKAIGQALQKHKDELADLMVKEMGKLPSQARQEVDLCTGICDYTAEHGPKKLADEERQPGNGERGFVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A653VXN3_9GAMM (Succinate semialdehyde dehydrogenase (NAD(P)+) Sad n=37 Tax=root TaxID=1 RepID=A0A653VXN3_9GAMM)

HSP 1 Score: 276 bits (706), Expect = 1.990e-89
Identity = 134/145 (92.41%), Postives = 139/145 (95.86%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSIKT+NP+NGETLE+Y LMSSAEAKQ+VD CYEAFLDWRLESLESRAKTVKAIGQALQ HKEELADLMV EMGKLPSQA QEVDLCTGICDYTAEHGPKKLADEERQP NGERGFVTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSIKTINPTNGETLESYTLMSSAEAKQIVDACYEAFLDWRLESLESRAKTVKAIGQALQKHKEELADLMVNEMGKLPSQARQEVDLCTGICDYTAEHGPKKLADEERQPGNGERGFVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A455UB58_9GAMM (Aldedh domain-containing protein n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A455UB58_9GAMM)

HSP 1 Score: 264 bits (675), Expect = 1.800e-88
Identity = 127/145 (87.59%), Postives = 137/145 (94.48%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI T+NP+NGETL+TY LM+S EAKQVVD CYEAFLDWRLESLE+RAKTVKAIGQALQ HK+EL DLMVKEMGKLPS+A QEVDLCTGICDYTAEHGP+KLADEERQPSNGERG V+YSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTINPTNGETLDTYTLMNSDEAKQVVDACYEAFLDWRLESLENRAKTVKAIGQALQEHKDELVDLMVKEMGKLPSEARQEVDLCTGICDYTAEHGPEKLADEERQPSNGERGIVSYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A455V7X9_9GAMM (Aldedh domain-containing protein n=1 Tax=Halomonas axialensis TaxID=115555 RepID=A0A455V7X9_9GAMM)

HSP 1 Score: 238 bits (608), Expect = 6.600e-76
Identity = 115/145 (79.31%), Postives = 126/145 (86.90%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNP+ GETLETY LM  ++AKQ+V+  +EAFLDWRL+ LE RAK VKAIG+A+  HKEEL DLMVKEMGKLPSQA  EVDLC GICDYTAEHGP KLADEER+P NGERG VTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTVNPTTGETLETYTLMDESQAKQIVEASHEAFLDWRLKPLEHRAKVVKAIGEAMNAHKEELTDLMVKEMGKLPSQARGEVDLCVGICDYTAEHGPTKLADEERKPGNGERGIVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A060B8W2_9GAMM (Succinate-semialdehyde dehydrogenase n=41 Tax=Halomonadaceae TaxID=28256 RepID=A0A060B8W2_9GAMM)

HSP 1 Score: 234 bits (598), Expect = 3.500e-73
Identity = 113/145 (77.93%), Postives = 129/145 (88.97%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNP+ GETLETYALM +++AKQ+V+  +EAFLDWRL+ LE RAK VKAIG+AL  +K+ELA+LMV+EMGKLPSQA QEV+LC GICDYTA+HGP  LADEER PSNGERG VTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTVNPTTGETLETYALMDASQAKQIVEASHEAFLDWRLKPLEQRAKVVKAIGEALNANKDELAELMVEEMGKLPSQARQEVELCAGICDYTAKHGPTTLADEERNPSNGERGIVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A3S8YV54_9GAMM (NAD-dependent succinate-semialdehyde dehydrogenase n=6 Tax=Halomonas TaxID=2745 RepID=A0A3S8YV54_9GAMM)

HSP 1 Score: 233 bits (595), Expect = 9.870e-73
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNP+ GETLETYALM +++AKQ+V+  +EAFLDWRL+ LE RAK VKAIG+AL  +KEELA+LMV EMGKLPSQA QEV+LC GICDYTA+HGP  LADE+R PSNGERG VTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTVNPATGETLETYALMDASQAKQIVEASHEAFLDWRLKPLEQRAKVVKAIGEALNANKEELAELMVNEMGKLPSQARQEVELCAGICDYTAKHGPTILADEQRNPSNGERGIVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: A0A0N8KJ86_9GAMM (Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase n=6 Tax=Halomonas TaxID=2745 RepID=A0A0N8KJ86_9GAMM)

HSP 1 Score: 231 bits (588), Expect = 1.110e-71
Identity = 113/145 (77.93%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNP+ GETLETYALM +++A QVV+  ++AFLDWRL+ LE RAK VKAIG+AL+ HKEELAD MVKEMGKLP QA QEVDLC GICDYTA  GP+ LADE R PSNGERG VTYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTVNPTTGETLETYALMDASQAIQVVEASHQAFLDWRLKPLEHRAKVVKAIGEALKAHKEELADFMVKEMGKLPEQAYQEVDLCVGICDYTAARGPESLADETRSPSNGERGIVTYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: Q5QZY1_IDILO (NAD-dependent aldehyde dehydrogenase n=2 Tax=Idiomarinaceae TaxID=267893 RepID=Q5QZY1_IDILO)

HSP 1 Score: 230 bits (587), Expect = 1.560e-71
Identity = 106/145 (73.10%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSN I T+NPSNGE L++Y  M  AE  Q++++ + AFL WRLESLE RAK+VKAIG+ALQ HKEE ADLMVKEMGKLP QA QE+DLC GICDYTAEHGP++LADEER+P NG+RG VTYSP+G++YGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNQITTINPSNGEQLKSYTKMDLAEVTQIIEESHAAFLQWRLESLEQRAKSVKAIGKALQEHKEEFADLMVKEMGKLPEQARQEIDLCVGICDYTAEHGPEELADEERKPGNGQRGIVTYSPIGIVYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: H0J5L1_9GAMM (NAD-dependent aldehyde dehydrogenase n=10 Tax=Halomonas TaxID=2745 RepID=H0J5L1_9GAMM)

HSP 1 Score: 228 bits (581), Expect = 1.240e-70
Identity = 108/145 (74.48%), Postives = 125/145 (86.21%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNPS GETL TY LM +++AKQVV+  Y+AFLDWRL+ LE RA  VKAIG+AL  HKEELA+L+V+EMGK P +A QE+DLC GICDYTAEHGP +LADEER+P NG+RG +TYSPMGVIYGIQPWNFPAYQV+RYSI
Sbjct:    1 MSNSITTVNPSTGETLATYTLMDASQAKQVVEASYQAFLDWRLKPLEHRASVVKAIGEALSAHKEELAELIVQEMGKPPEEARQEIDLCAGICDYTAEHGPTELADEERKPGNGKRGIITYSPMGVIYGIQPWNFPAYQVVRYSI 145          
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Match: UPI001D0A75EF (NAD-dependent succinate-semialdehyde dehydrogenase n=1 Tax=Halomonas malpeensis TaxID=1172368 RepID=UPI001D0A75EF)

HSP 1 Score: 213 bits (542), Expect = 8.470e-65
Identity = 100/145 (68.97%), Postives = 121/145 (83.45%), Query Frame = 1
Query:    1 MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRAKTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHGPKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI 435
            MSNSI TVNP+ GE LETY+LM  ++A ++V+  ++AFL WRL+SL+ RA  +KAIG+AL ++KE  A L+V EMGK P +A QE+DLC GICDYTAE+GPKKLADEER+P NGERG VTYSPMGVIYGIQPWNFPAYQ +RYSI
Sbjct:    1 MSNSITTVNPATGENLETYSLMDESKAIEIVEQSHQAFLQWRLKSLDERANVIKAIGKALADNKEAFAKLIVDEMGKPPEEARQEIDLCVGICDYTAENGPKKLADEERKPGNGERGIVTYSPMGVIYGIQPWNFPAYQAVRYSI 145          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12114.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3T1DVJ3_9GAMM2.010e-9394.48Aldedh domain-containing protein n=1 Tax=Halomonas... [more]
A0A653VXN3_9GAMM1.990e-8992.41Succinate semialdehyde dehydrogenase (NAD(P)+) Sad... [more]
A0A455UB58_9GAMM1.800e-8887.59Aldedh domain-containing protein n=1 Tax=Halomonas... [more]
A0A455V7X9_9GAMM6.600e-7679.31Aldedh domain-containing protein n=1 Tax=Halomonas... [more]
A0A060B8W2_9GAMM3.500e-7377.93Succinate-semialdehyde dehydrogenase n=41 Tax=Halo... [more]
A0A3S8YV54_9GAMM9.870e-7377.93NAD-dependent succinate-semialdehyde dehydrogenase... [more]
A0A0N8KJ86_9GAMM1.110e-7177.93Succinate-semialdehyde dehydrogenase / glutarate-s... [more]
Q5QZY1_IDILO1.560e-7173.10NAD-dependent aldehyde dehydrogenase n=2 Tax=Idiom... [more]
H0J5L1_9GAMM1.240e-7074.48NAD-dependent aldehyde dehydrogenase n=10 Tax=Halo... [more]
UPI001D0A75EF8.470e-6568.97NAD-dependent succinate-semialdehyde dehydrogenase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12114contigE-siliculosus-1a_F_contig12114:1267..1701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size435
Model size435
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.C
EC1.2.1.16,1.2.1.20,1.2.1.79
EggNOG OGs1MU1V@1224,1RMBQ@1236,1XHTH@135619,COG1012@1,COG1012@2
EggNOG free text desc.Aldehyde dehydrogenase family
KEGG ModuleM00027
KEGG Pathwayko00250,ko00310,ko00350,ko00650,ko00760,ko01100,ko01120,map00250,map00310,map00350,map00650,map00760,map01100,map01120
KEGG ReactionR00713,R00714,R02401
KEGG koko:K00135
KEGG rclassRC00080
Preferred namegabD
Seed eggNOG ortholog1504981.KO116_3042
Seed ortholog evalue6.2e-73
Seed ortholog score280.0
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.4508417-CDS-E-siliculosus-1a_F_contig12114:1266..17011622927731.4508417-CDS-E-siliculosus-1a_F_contig12114:1266..1701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12114 1267..1701 +
1696318658.2977147-CDS-E-siliculosus-1a_F_contig12114:1266..17011696318658.2977147-CDS-E-siliculosus-1a_F_contig12114:1266..1701Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12114 1267..1701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12114.1351.1prot_E-siliculosus-1a_F_contig12114.1351.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12114 1267..1701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12114.1351.1

>prot_E-siliculosus-1a_F_contig12114.1351.1 ID=prot_E-siliculosus-1a_F_contig12114.1351.1|Name=mRNA_E-siliculosus-1a_F_contig12114.1351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=145bp
MSNSIKTVNPSNGETLETYALMSSAEAKQVVDDCYEAFLDWRLESLESRA
KTVKAIGQALQNHKEELADLMVKEMGKLPSQASQEVDLCTGICDYTAEHG
PKKLADEERQPSNGERGFVTYSPMGVIYGIQPWNFPAYQVIRYSI
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mRNA from alignment at E-siliculosus-1a_F_contig12114:1267..1701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12114.1351.1 ID=mRNA_E-siliculosus-1a_F_contig12114.1351.1|Name=mRNA_E-siliculosus-1a_F_contig12114.1351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=435bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12114:1267..1701+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCAACAGCATTAAGACAGTTAACCCAAGCAATGGTGAAACCCTCGA AACCTACGCACTGATGAGTAGTGCTGAGGCAAAGCAAGTTGTGGATGACT GCTACGAGGCATTTCTCGATTGGCGCCTTGAGTCTTTGGAAAGCCGCGCT AAAACGGTCAAAGCGATTGGCCAAGCCCTTCAGAATCACAAAGAAGAGCT TGCAGACTTGATGGTCAAAGAGATGGGTAAACTACCTTCTCAGGCCAGCC AGGAAGTTGATCTATGCACCGGCATCTGTGACTACACCGCTGAACATGGC CCCAAAAAACTGGCTGATGAAGAGCGCCAGCCTAGCAACGGCGAACGCGG CTTTGTAACGTATTCACCGATGGGTGTTATCTACGGTATTCAGCCGTGGA ACTTCCCTGCTTATCAAGTAATACGCTACTCGATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12114:1267..1701+

>mRNA_E-siliculosus-1a_F_contig12114.1351.1 ID=mRNA_E-siliculosus-1a_F_contig12114.1351.1|Name=mRNA_E-siliculosus-1a_F_contig12114.1351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=870bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12114:1267..1701+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCAACAGCATTAAGACAGTTAACCCAAGCAATGGTGAAACCCTCGA
AACCTACGCACTGATGAGTAGTGCTGAGGCAAAGCAAGTTGTGGATGACT
GCTACGAGGCATTTCTCGATTGGCGCCTTGAGTCTTTGGAAAGCCGCGCT
AAAACGGTCAAAGCGATTGGCCAAGCCCTTCAGAATCACAAAGAAGAGCT
TGCAGACTTGATGGTCAAAGAGATGGGTAAACTACCTTCTCAGGCCAGCC
AGGAAGTTGATCTATGCACCGGCATCTGTGACTACACCGCTGAACATGGC
CCCAAAAAACTGGCTGATGAAGAGCGCCAGCCTAGCAACGGCGAACGCGG
CTTTGTAACGTATTCACCGATGGGTGTTATCTACGGTATTCAGCCGTGGA
ACTTCCCTGCTTATCAAGTAATACGCTACTCGATTATGAGCAACAGCATT
AAGACAGTTAACCCAAGCAATGGTGAAACCCTCGAAACCTACGCACTGAT
GAGTAGTGCTGAGGCAAAGCAAGTTGTGGATGACTGCTACGAGGCATTTC
TCGATTGGCGCCTTGAGTCTTTGGAAAGCCGCGCTAAAACGGTCAAAGCG
ATTGGCCAAGCCCTTCAGAATCACAAAGAAGAGCTTGCAGACTTGATGGT
CAAAGAGATGGGTAAACTACCTTCTCAGGCCAGCCAGGAAGTTGATCTAT
GCACCGGCATCTGTGACTACACCGCTGAACATGGCCCCAAAAAACTGGCT
GATGAAGAGCGCCAGCCTAGCAACGGCGAACGCGGCTTTGTAACGTATTC
ACCGATGGGTGTTATCTACGGTATTCAGCCGTGGAACTTCCCTGCTTATC
AAGTAATACGCTACTCGATT
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