mRNA_E-siliculosus-1a_F_contig1211.1344.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1211.1344.1
Unique NamemRNA_E-siliculosus-1a_F_contig1211.1344.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1344.1 vs. uniprot
Match: A0A6H5L2X5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-17
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3 
Query:  120 MGGGADKRATGNFFLGATTTCSPEAAKEVHFVYGLHPSSATG 245
            MGGGADKRATGN FL ATTTCSPEAAKEV FVYGLHPSSATG
Sbjct:    1 MGGGADKRATGNSFLRATTTCSPEAAKEVDFVYGLHPSSATG 42
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1344.1 vs. uniprot
Match: D7FTS5_ECTSI (Glycos_transf_1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.220e-14
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 3 
Query:  120 MGGGADKRATGNFFLGATTTCSPEAAKEVHFVYGLHPSSATG 245
            MGGGADKRATGN FLGATTTCSPEAA EV FVYGL P SATG
Sbjct:    1 MGGGADKRATGNSFLGATTTCSPEAANEVDFVYGLPPGSATG 42
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1211.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2X5_9PHAE1.410e-1792.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTS5_ECTSI2.220e-1488.10Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1211contigE-siliculosus-1a_F_contig1211:3201..5671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size246
Model size248
Exons2
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.8583481-CDS-E-siliculosus-1a_F_contig1211:3200..33431622927730.8583481-CDS-E-siliculosus-1a_F_contig1211:3200..3343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 3201..3343 +
1696318658.12849-CDS-E-siliculosus-1a_F_contig1211:3200..33431696318658.12849-CDS-E-siliculosus-1a_F_contig1211:3200..3343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 3201..3343 +
1622927730.8795218-CDS-E-siliculosus-1a_F_contig1211:5566..56691622927730.8795218-CDS-E-siliculosus-1a_F_contig1211:5566..5669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 5567..5669 +
1696318658.1380987-CDS-E-siliculosus-1a_F_contig1211:5566..56691696318658.1380987-CDS-E-siliculosus-1a_F_contig1211:5566..5669Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 5567..5669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1211.1344.1prot_E-siliculosus-1a_F_contig1211.1344.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1211 3201..5669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1211.1344.1

>prot_E-siliculosus-1a_F_contig1211.1344.1 ID=prot_E-siliculosus-1a_F_contig1211.1344.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
RRAVAAAASGSGVAAVGGRRNSATPGDAYNRPLLSSPTATWEVEPTRGLR
GISSSERPPRARRKRRKRSTSSTASIPVARPA
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mRNA from alignment at E-siliculosus-1a_F_contig1211:3201..5671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1211.1344.1 ID=mRNA_E-siliculosus-1a_F_contig1211.1344.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2471bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1211:3201..5671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTCGAGCAGTCGCCGCCGCCGCTTCGGGTTCCGGCGTTGCTGCTGTAGG
AGGTAGGAGGAATAGCGCGACCCCCGGGGACGCGTACAACCGACCGCTAC
TTTCGTCTCCAACAGCAACATGGGAGGTGGAGCCGACAAGAGGGTGAGTG
GATCCGCGCCTGCAGGAGCGGCTGTCCTGCTTTGAATTTGTTTGTACGGG
AAGACCCGGCGAATTGCAGGATGAACCACACGGCAACAGGGCACACCACA
CCCTTCATGGCTACCCCTCAATCCCAGCCTACAATGGAACAAGAGATAGA
AGAGAGAAGGGGATACAAGGTGGACGATCGATCGTGGAACAAGAGATAGA
AGAGAGAAGGGGATACAAGGTGGACGATCGATCGTGATAAACACCATTGC
TGCGCTGTAGACTACAATGGAGCAGTCTAACTTTGATGCCACCAAACAAC
CCGCTCATGATACTCAATATATATCCACAGCTCTCATGCTCCTCATATGT
GTGTGCTCCTCATGTCTGCACCATGCGCCATGTTTTACTCGCCGACAAGT
AGCACCCCCTGTTGTTTGTAGTGCAATGTCCAGAAAATCCCCTCTCTGTT
CTGCTAACCGTACGTAGTAAGCAATGTAGAACAGGACAATAAGCGCAACT
TATTTCCACATCAGGAAACGAACGCGGAACCGCGTTAAACATTTTTTTTG
CTTGGGAACCTGTTTGCGGGACGCTCGGAGGGTGCGGTCTCAACTTGCTC
CCGAACACCACTTGATAGCGCATACGTCTCGTGTGAATCCCCATGGTATC
GGTCTACATGCATTCACATGACTATATCAGGAGCTCGGTCAATGTGTGGT
ACGTACGGCCCGAGAGGCCCGCTGCAGTCATCATGCGAGAGATAAAAAAA
CCTCTCGTCGTTCCTTCCGCCAATATGTGCGATTACCCGAAGTCCCCGGC
ATTTGTGTCTTTTACTCGACACTCGAAACTGAAGTAGCACGCCGCAAACG
CGATCTTCTTTCCTCTGTAGCAGGTATGCATGTGTACGTATGTAGGAGGC
CAGGACGCAGCATTCCAAAGCATTACAGGCTCACTTGCAAGTATTACAAA
TGCAATACTGAGAACCGCCCGCCTCTTGAGAGGACGGACGGATGGGGCCC
CCACAGGAAGATGTTACAGTACGTAAGAAGAGCAAACCTAGGGGAACATT
CCGGGATATTTCCCGCAGGAAATGCGAACAGCATGTATTTGGGCACGATC
GGTGAGTTGGGGAGTTGGGCACGATGCGCGTCCGTCCGCGAAAGGCGAGC
TCCGCTCCCAACCCCAACCTACCCTTCTGTGTCTGAACACATTCATTCGG
CCCACGCATTGGCAACTACTCGATTACTCGCCACATTATTAGCCAGAGGA
ACTACAATTTGTTGTGTATCAGTATGCCTCCGCTGGCGGTCGTATCCATC
ACATCTATTGTACAAAGACTCCGACATCCCGTTCGACTGCATGTGGTTAT
ATCTCGAATGGTAGTCTTTCTGTGCTTTTCCTAACATAATGCCTCATCTC
GGGAGTCATCATGCGCTTTGTGTGGAACAGATCAACAGGCGGTTTCCATC
AACGGCGACGACGAAGATCTCCTGGGTCTGCTGTATGTAGTCTATGTGTG
TCGTGTGTTCCTAACATATATTTGTTTTGCCGTCCCTCTATGTACACACA
CTAATTTTTGGTGTTTGTGTTACAAACTAAGTTGTTTGAAGACTTGTCAG
CCGGGGTCACATACAACAGATGTTTTAGTCTTTCCGCGAGAAGAAGGGTT
CAACCCACCGAGGCGACATCGAAGATCTGCAGTGTACTCACACGAATTAA
TTTTTTTTTCCAAAGTGTACGAGGAAAAACTCTCCGCAGGAAGGTATCGA
GGCATTTATACGCAGTATTAGCGTGTAGGGTCAGTACAATAATAAAAATT
AAGGCAAATAGCCTACAGACAATTTCCTGCATAAAATATCCCGCCGTGGA
CTCTGCTACTTGATCCGTCCGCGTTTCTTTCTCGATTCTCGGGTTTTCAG
CGCGGGTTGTTGTGGAAACGTTTCAACAGCCAAAGATGCATGTTAGTGAT
AGCGTTAGTGCCGAAGTTTACGTTTCGTTTGTAGTGCAGATGGTACGGAC
GAATCGTTCATCGGCCGCAATCACAACTCTCCCGCCGACGCGTTGTGTTT
CTTAGAAAGTAGTGCCTCCTCTTGCCTTCCTCACCTACATAGTATAGGCG
ACCTGACAGAGACACACGTTGCGCATACAATAAATTGGCTCTTTCTGGGG
AGGCTCTGCGGTTCACTCATGGTATGACGAGCACTCCCGCTCCCCGCTTG
TATCTACCTCGACCAGGCTACGGGGAATTTCTTCCTCGGAGCGACCACCA
CGTGCTCGCCGGAAGCGGCGAAAGAGGTCCACTTCGTCTACGGCCTCCAT
CCCAGTAGCGCGACCGGCGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1211:3201..5671+

>mRNA_E-siliculosus-1a_F_contig1211.1344.1 ID=mRNA_E-siliculosus-1a_F_contig1211.1344.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1344.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1211:3201..5671+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTCGAGCAGTCGCCGCCGCCGCTTCGGGTTCCGGCGTTGCTGCTGTAGG
AGGTAGGAGGAATAGCGCGACCCCCGGGGACGCGTACAACCGACCGCTAC
TTTCGTCTCCAACAGCAACATGGGAGGTGGAGCCGACAAGAGGCGTCGAG
CAGTCGCCGCCGCCGCTTCGGGTTCCGGCGTTGCTGCTGTAGGAGGTAGG
AGGAATAGCGCGACCCCCGGGGACGCGTACAACCGACCGCTACTTTCGTC
TCCAACAGCAACATGGGAGGTGGAGCCGACAAGAGGGCTACGGGGAATTT
CTTCCTCGGAGCGACCACCACGTGCTCGCCGGAAGCGGCGAAAGAGGTCC
ACTTCGTCTACGGCCTCCATCCCAGTAGCGCGACCGGCGGCTACGGGGAA
TTTCTTCCTCGGAGCGACCACCACGTGCTCGCCGGAAGCGGCGAAAGAGG
TCCACTTCGTCTACGGCCTCCATCCCAGTAGCGCGACCGGCG
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