mRNA_E-siliculosus-1a_F_contig12102.1343.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12102.1343.1
Unique NamemRNA_E-siliculosus-1a_F_contig12102.1343.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 6.940e-44
Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 1
Query:   25 SRQMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
            S  MSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES YH
Sbjct:  169 STAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESSYH 246          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.220e-20
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   43 MGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGY 255
            MGLPL LP DA  TLYVEGIP D SERE+AHIFRPFPGY SLR+R K       A     A+CFVEF++ Y
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQ---RAMCFVEFDNAY 68          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 67.8 bits (164), Expect = 2.160e-12
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
            L LP DA  TL+VEG+P D S RE+AHIFRPFPGY  +RL  K  +     + ++  +CFV+FE+
Sbjct:   45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKH---RNGDLIILCFVDFEN 106          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6I9TGF3_SESIN (RNA-binding protein 2 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TGF3_SESIN)

HSP 1 Score: 68.6 bits (166), Expect = 2.830e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
            + LP +A  TLYVEG+P D +ERE+AHIFRPF GY+ LRL  +  R LG        +CFV+F +  H
Sbjct:   94 IPLPPNACRTLYVEGLPADSTEREVAHIFRPFMGYMGLRLVRREPRQLGGQPV---VLCFVDFLTSAH 158          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A5A7P711_STRAF (RNA-binding protein with multiple splicing n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P711_STRAF)

HSP 1 Score: 68.9 bits (167), Expect = 3.270e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 DARRSSNSRQMSAMGLP-LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
            D   ++ SR +   G P + LP DA  TLYVEG+PG+ S RE++HIFRPF GY  +RL  K  R  G  +     +CFV+F S  H
Sbjct:  110 DLAVAAKSRPIGVGGRPEIQLPPDATSTLYVEGLPGNCSRREVSHIFRPFVGYKEVRLVTKESRHSGGDTL---VLCFVDFLSPAH 192          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6A4KTQ8_9ERIC (RRM domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KTQ8_9ERIC)

HSP 1 Score: 66.6 bits (161), Expect = 4.170e-11
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   31 QMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
            +MS   +PL  P DA +TLYVEG+P D++ RE+AHIFRPF GY  +RL +K  R  G        +CFV+F
Sbjct:  176 RMSRETIPL--PPDASNTLYVEGLPSDITRREVAHIFRPFVGYKEVRLVSKESRHRGGDPL---ILCFVDF 241          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2P6N8W8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N8W8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 4.980e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   61 LPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
            +P +A  TLYVEG+P D +ERE+AHIFR +PGY SLR+  K G+     + N   +CFVEF++
Sbjct:  365 IPEEASSTLYVEGLPLDATEREVAHIFRQWPGYQSLRILQKDGKLFTGRTYN---LCFVEFDN 424          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6J0LR22_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LR22_RAPSA)

HSP 1 Score: 66.2 bits (160), Expect = 5.700e-11
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   49 LPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
            +  GLP +A  TL+VEG+P D S RE+AHIFRPFPGY  +RL  K  +     + +   +CFV+FE+
Sbjct:  183 IGFGLPPNASKTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKH---RNGDRIILCFVDFEN 246          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2I0X9W7_9ASPA (U2 small nuclear ribonucleoprotein B n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X9W7_9ASPA)

HSP 1 Score: 64.7 bits (156), Expect = 1.550e-10
Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   46 GLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
            G  + LP DA +TL+VEG+P D +ERE+AHIFRPF GY  +RL  K  +  G    N   +CFV+F
Sbjct:  145 GREIPLPPDASNTLFVEGLPRDTTEREVAHIFRPFLGYKEIRLVKKEPKYDGG---NPIVLCFVDF 207          
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2R6QYP3_ACTCC (RNA-binding protein like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6QYP3_ACTCC)

HSP 1 Score: 64.7 bits (156), Expect = 1.680e-10
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
            L LP DA +TLY EG+P DV+ RE+AHIFRPF GY  +RL  K  R  G        +CFV+F
Sbjct:  155 LPLPPDASNTLYAEGLPPDVTRREVAHIFRPFVGYEDVRLVTKESRHRGGDPL---ILCFVDF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C0_9PHAE6.940e-4496.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z002_9STRA1.220e-2063.38RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6J0KMJ8_RAPSA2.160e-1250.77nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A6I9TGF3_SESIN2.830e-1250.00RNA-binding protein 2 n=1 Tax=Sesamum indicum TaxI... [more]
A0A5A7P711_STRAF3.270e-1245.35RNA-binding protein with multiple splicing n=1 Tax... [more]
A0A6A4KTQ8_9ERIC4.170e-1149.30RRM domain-containing protein (Fragment) n=1 Tax=R... [more]
A0A2P6N8W8_9EUKA4.980e-1150.79Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A6J0LR22_RAPSA5.700e-1147.76nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A2I0X9W7_9ASPA1.550e-1050.00U2 small nuclear ribonucleoprotein B n=1 Tax=Dendr... [more]
A0A2R6QYP3_ACTCC1.680e-1052.38RNA-binding protein like n=2 Tax=Actinidia TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12102contigE-siliculosus-1a_F_contig12102:1328..1585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size258
Model size258
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelasterids
COG Functional cat.A
EggNOG OGs28P7S@1,2QVUV@2759,37R9W@33090,3GGIM@35493,44PN0@71274
EggNOG free text desc.RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Seed eggNOG ortholog4096.XP_009775991.1
Seed ortholog evalue4.9e-09
Seed ortholog score67.0
Taxonomic scopeViridiplantae
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.7745998-CDS-E-siliculosus-1a_F_contig12102:1327..15851622927730.7745998-CDS-E-siliculosus-1a_F_contig12102:1327..1585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12102 1328..1585 +
1696318658.1171958-CDS-E-siliculosus-1a_F_contig12102:1327..15851696318658.1171958-CDS-E-siliculosus-1a_F_contig12102:1327..1585Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12102 1328..1585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12102.1343.1prot_E-siliculosus-1a_F_contig12102.1343.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12102 1328..1585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12102.1343.1

>prot_E-siliculosus-1a_F_contig12102.1343.1 ID=prot_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=86bp
DDARRSSNSRQMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPF
PGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH
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mRNA from alignment at E-siliculosus-1a_F_contig12102:1328..1585+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12102.1343.1 ID=mRNA_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACGACGCTCGACGATCATCAAATTCTCGGCAGATGTCGGCGATGGGGCT GCCCCTGGGCCTTCCCAGCGACGCCCACCACACCCTCTACGTGGAAGGGA TCCCGGGGGACGTGTCGGAGAGGGAGCTTGCCCACATCTTCCGGCCGTTT CCTGGTTACATCTCGCTCAGGCTAAGGGCCAAGGGCGGGCGCAGCCTGGG GTCCGCCTCTGCTAACGTGGAGGCAATCTGCTTCGTGGAGTTCGAGTCCG GCTACCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12102:1328..1585+

>mRNA_E-siliculosus-1a_F_contig12102.1343.1 ID=mRNA_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACGACGCTCGACGATCATCAAATTCTCGGCAGATGTCGGCGATGGGGCT
GCCCCTGGGCCTTCCCAGCGACGCCCACCACACCCTCTACGTGGAAGGGA
TCCCGGGGGACGTGTCGGAGAGGGAGCTTGCCCACATCTTCCGGCCGTTT
CCTGGTTACATCTCGCTCAGGCTAAGGGCCAAGGGCGGGCGCAGCCTGGG
GTCCGCCTCTGCTAACGTGGAGGCAATCTGCTTCGTGGAGTTCGAGTCCG
GCTACCACGACGACGCTCGACGATCATCAAATTCTCGGCAGATGTCGGCG
ATGGGGCTGCCCCTGGGCCTTCCCAGCGACGCCCACCACACCCTCTACGT
GGAAGGGATCCCGGGGGACGTGTCGGAGAGGGAGCTTGCCCACATCTTCC
GGCCGTTTCCTGGTTACATCTCGCTCAGGCTAAGGGCCAAGGGCGGGCGC
AGCCTGGGGTCCGCCTCTGCTAACGTGGAGGCAATCTGCTTCGTGGAGTT
CGAGTCCGGCTACCAC
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