mRNA_E-siliculosus-1a_F_contig12102.1343.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 6.940e-44 Identity = 75/78 (96.15%), Postives = 75/78 (96.15%), Query Frame = 1
Query: 25 SRQMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
S MSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES YH
Sbjct: 169 STAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESSYH 246
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.220e-20 Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 43 MGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGY 255
MGLPL LP DA TLYVEGIP D SERE+AHIFRPFPGY SLR+R K A A+CFVEF++ Y
Sbjct: 1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARGDGAQ---RAMCFVEFDNAY 68
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA) HSP 1 Score: 67.8 bits (164), Expect = 2.160e-12 Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 1
Query: 55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
L LP DA TL+VEG+P D S RE+AHIFRPFPGY +RL K + + ++ +CFV+FE+
Sbjct: 45 LRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKH---RNGDLIILCFVDFEN 106
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6I9TGF3_SESIN (RNA-binding protein 2 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TGF3_SESIN) HSP 1 Score: 68.6 bits (166), Expect = 2.830e-12 Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
+ LP +A TLYVEG+P D +ERE+AHIFRPF GY+ LRL + R LG +CFV+F + H
Sbjct: 94 IPLPPNACRTLYVEGLPADSTEREVAHIFRPFMGYMGLRLVRREPRQLGGQPV---VLCFVDFLTSAH 158
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A5A7P711_STRAF (RNA-binding protein with multiple splicing n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P711_STRAF) HSP 1 Score: 68.9 bits (167), Expect = 3.270e-12 Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 4 DARRSSNSRQMSAMGLP-LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFESGYH 258
D ++ SR + G P + LP DA TLYVEG+PG+ S RE++HIFRPF GY +RL K R G + +CFV+F S H
Sbjct: 110 DLAVAAKSRPIGVGGRPEIQLPPDATSTLYVEGLPGNCSRREVSHIFRPFVGYKEVRLVTKESRHSGGDTL---VLCFVDFLSPAH 192
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6A4KTQ8_9ERIC (RRM domain-containing protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4KTQ8_9ERIC) HSP 1 Score: 66.6 bits (161), Expect = 4.170e-11 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 31 QMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
+MS +PL P DA +TLYVEG+P D++ RE+AHIFRPF GY +RL +K R G +CFV+F
Sbjct: 176 RMSRETIPL--PPDASNTLYVEGLPSDITRREVAHIFRPFVGYKEVRLVSKESRHRGGDPL---ILCFVDF 241
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2P6N8W8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N8W8_9EUKA) HSP 1 Score: 67.0 bits (162), Expect = 4.980e-11 Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 61 LPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
+P +A TLYVEG+P D +ERE+AHIFR +PGY SLR+ K G+ + N +CFVEF++
Sbjct: 365 IPEEASSTLYVEGLPLDATEREVAHIFRQWPGYQSLRILQKDGKLFTGRTYN---LCFVEFDN 424
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A6J0LR22_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0LR22_RAPSA) HSP 1 Score: 66.2 bits (160), Expect = 5.700e-11 Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 49 LPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEFES 249
+ GLP +A TL+VEG+P D S RE+AHIFRPFPGY +RL K + + + +CFV+FE+
Sbjct: 183 IGFGLPPNASKTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKH---RNGDRIILCFVDFEN 246
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2I0X9W7_9ASPA (U2 small nuclear ribonucleoprotein B n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X9W7_9ASPA) HSP 1 Score: 64.7 bits (156), Expect = 1.550e-10 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 46 GLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
G + LP DA +TL+VEG+P D +ERE+AHIFRPF GY +RL K + G N +CFV+F
Sbjct: 145 GREIPLPPDASNTLFVEGLPRDTTEREVAHIFRPFLGYKEIRLVKKEPKYDGG---NPIVLCFVDF 207
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Match: A0A2R6QYP3_ACTCC (RNA-binding protein like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6QYP3_ACTCC) HSP 1 Score: 64.7 bits (156), Expect = 1.680e-10 Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 55 LGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRSLGSASANVEAICFVEF 243
L LP DA +TLY EG+P DV+ RE+AHIFRPF GY +RL K R G +CFV+F
Sbjct: 155 LPLPPDASNTLYAEGLPPDVTRREVAHIFRPFVGYEDVRLVTKESRHRGGDPL---ILCFVDF 214 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12102.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12102.1343.1 >prot_E-siliculosus-1a_F_contig12102.1343.1 ID=prot_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=86bp DDARRSSNSRQMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFback to top mRNA from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12102.1343.1 ID=mRNA_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ >mRNA_E-siliculosus-1a_F_contig12102.1343.1 ID=mRNA_E-siliculosus-1a_F_contig12102.1343.1|Name=mRNA_E-siliculosus-1a_F_contig12102.1343.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12102:1328..1585+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |