mRNA_E-siliculosus-1a_F_contig1210.1342.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1210.1342.1
Unique NamemRNA_E-siliculosus-1a_F_contig1210.1342.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5JZ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ21_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 5.360e-13
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   55 VPSCYLDKGKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            +P   ++ GKS+NSLG++   QERQFK+QRRAGSDATRA+FA QQM T+REKRSI
Sbjct:  153 LPLPSVEDGKSLNSLGIIGRPQERQFKRQRRAGSDATRAEFAMQQMLTSREKRSI 207
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5KT83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT83_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.010e-12
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS+NSLG++   QERQFK+QRRAGSD TRA+FA QQM T+REKRSI
Sbjct:   92 GKSLNSLGIIGRPQERQFKRQRRAGSDVTRAEFAMQQMLTSREKRSI 138
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.060e-12
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS+NSLG++   QERQFK+QRRAGSDATRA+FA QQM T+REKRSI
Sbjct:   17 GKSLNSLGIIGRPQERQFKRQRRAGSDATRAEFAMQQMLTSREKRSI 63
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.350e-12
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS+NSLG++   QERQFK+QRRAGSDATRA+FA QQM T+REKRSI
Sbjct:   45 GKSLNSLGIIGRPQERQFKRQRRAGSDATRAEFAMQQMLTSREKRSI 91
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.040e-12
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS+NSLG++   QERQFK+QRRAGSDATRA+FA QQM T+REKRS+
Sbjct:   92 GKSLNSLGIIGRPQERQFKRQRRAGSDATRAEFAMQQMLTSREKRSM 138
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5KLA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.710e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS NSLG++   QERQFK+QRRAGSDATRA+FA QQM T+REKRSI
Sbjct:   17 GKSPNSLGIIGRPQERQFKRQRRAGSDATRAEFAMQQMLTSREKRSI 63
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: D7FMP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.190e-9
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 MASSPDAAATDYEWRKTSVPSCYLDKGK 84
            MASSPDAAAT YEW+KTS PSCYLDKGK
Sbjct:    1 MASSPDAAATGYEWKKTSAPSCYLDKGK 28
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.380e-7
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   58 PSCYLDKGKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            P      GKS NSLG L AV+ER FK+QR AGSDATRA F  +   + RE+RS+
Sbjct:  113 PKSQFHTGKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSV 166
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5KAX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX8_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.420e-7
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQ-MATTREKRSI 219
            GKS NS+G+L A Q+ +FK+QR AGSDATRAQ ATQQ + T+R++RS+
Sbjct:   18 GKSCNSIGILSAPQQSRFKRQRLAGSDATRAQCATQQHVFTSRQQRSM 65
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   79 GKSINSLGVLRAVQERQFKQQRRAGSDATRAQFATQQMATTREKRSI 219
            GKS NSLG L AV+ER FK+QR AGSDATRA F  +   + RE+RS+
Sbjct:  110 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSV 156
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JZ21_9PHAE5.360e-1367.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT83_9PHAE2.010e-1274.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE2.060e-1276.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE2.350e-1276.60Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L611_9PHAE6.040e-1274.47Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA1_9PHAE9.710e-1276.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMP6_ECTSI4.190e-989.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUI4_9PHAE3.380e-755.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAX8_9PHAE4.420e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE1.190e-661.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1210contigE-siliculosus-1a_F_contig1210:27464..30288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size219
Model size219
Exons2
Ec32 orthologEc-23_001110.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.713505-CDS-E-siliculosus-1a_F_contig1210:27463..276031622927730.713505-CDS-E-siliculosus-1a_F_contig1210:27463..27603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 27464..27603 -
1696318658.0990045-CDS-E-siliculosus-1a_F_contig1210:27463..276031696318658.0990045-CDS-E-siliculosus-1a_F_contig1210:27463..27603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 27464..27603 -
1622927730.7277064-CDS-E-siliculosus-1a_F_contig1210:30209..302881622927730.7277064-CDS-E-siliculosus-1a_F_contig1210:30209..30288Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 30210..30288 -
1696318658.1080728-CDS-E-siliculosus-1a_F_contig1210:30209..302881696318658.1080728-CDS-E-siliculosus-1a_F_contig1210:30209..30288Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 30210..30288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1210.1342.1prot_E-siliculosus-1a_F_contig1210.1342.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1210 27464..30288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1210.1342.1

>prot_E-siliculosus-1a_F_contig1210.1342.1 ID=prot_E-siliculosus-1a_F_contig1210.1342.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=73bp
MASSPDAAATDYEWRKTSVPSCYLDKGKSINSLGVLRAVQERQFKQQRRA
GSDATRAQFATQQMATTREKRSI
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mRNA from alignment at E-siliculosus-1a_F_contig1210:27464..30288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1210.1342.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1342.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2825bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:27464..30288- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTCGAGCCCAGATGCAGCAGCTACAGACTACGAGTGGAGGAAGAC
ATCTGTCCCCTCGTGCTATCTTGACAAGGGTAAAGGCAAGTGGCGGCTTA
GGCTCAACTTCACGTCCCGGAAGGGAGAGAAGCCAAAGGAGGAAGTACGG
GCCCACGTGCGACTCGCAGGAGGAAGCTCTTGCGGGCAGTGAGGCCTTCA
GGGTTAGCTGGGAGTTCAGCCACCGTGGTCAACCCTTCAACCCTAGCAAT
AAACATCTCCCAAGCTCGGCATCTGCTGCGGCGGACACTACGCTTCCAGC
AGGCAAGTCGTGAAGATCATTACCGTCCATGAAAATTGAAATTTGACGTC
TTTTCTCTTTTTCTGGGGACGCAGGATCCAACGGACTGTACCTACTCTGC
AAGCAGCGCACGGGCTGCATTTAGTCGTGAATGTTATTTAAGGGAATGGG
TGAATAGAGGTGGATGCGTCAGTTTGTGTGAGGTGTAGCTCGTGAGGTCT
GCAGCCTGAATTTTGAATTTCAACGGCCTCTTTGGAAACATGCACAATGC
ACACGCATCAAACTCAAGCAGCAGTTTCCGCTACCTTTGTTGTTGTTGCT
TAGAGGTTTCGCACTGGATGGTCAGCAGCGTATTCTGGTCTGTAGGCAGC
TCTCTCTGCACACTCCAGCCGTAGGTGAATGTAATTCTACAGCTGTCACT
GGTGTATATCTGATGCCAAGCTTCCTTGCGCATTCTATCACACTGGTCTG
CATCCGGCTTGGTCTTTGTGTACTCCGTACTACTGTAGATGGGGAGGAGT
AATGAACCGCGAGGCTCATCTGTAGGCTTCCGCACTTCATAGATGCGTAT
CCGGATCATTCGAGCTGATCTTCCAAGACTGCTGTGCATCCGCTCCCACC
TGGTGTCAAATGCTACACCAACGAGCGGCGGAGGAACACACAGACACTCA
CGCCGTGACACACACGACCTTGGTACAGCAGTACCGCCAAACGATCTGCA
CCTATCAGCACTGCCGCCAACAAGAAAGATGAACAAGGTGGCAGACACGA
AAACACTCGATAGAGCTCATTGGGCAGCGCGGTGTGGAAAGTTGCTGGAG
CACAACTCCAACAGAACCAGCTCGTTCTCTCGCATGGGCCGTTTGTCCAC
ATCTCAGTCTCATGTTTCGCTTGCTGATGGAGGCGGCGGCGTTTGTTTGC
TTCCCTTATCCCCCGCCCTATTGTTGTCCGGCAAAAGACGTCATCCCCGT
ATCGTTCACAGTCCCATCTGGCGACCGCGCCAACAGCACCAAACGCCTCA
ACTTCGCTCTCCGCTGCTGTTGTTACTGCTGTCGGAAAAACCTCTCCTCA
ATCTATCCTATGTTCATCTATCGATTTTTCCAACGGCAAGAATAGAACGG
ATCGTCTAGAAGACTCCCTGTTGTTTAGTCAGAGAGCGGACACCAGGTCT
GCTGTTGCTGCTGTGCTTTCACCTATGGGAGGGATTGGACCACGGCGGGT
GGGTGCGATTCTGTGGATGTGCGAGACTTTTCAGTGGTACCTCTGTTTCT
TCTCCTGGTTTCAATCGCGCGCGCATGAGTCTCCGCTTTTGTGTTCCCCC
CTTTCCTGGAGGAAACCCGGGGATGGATGGATGGGGTGAGGTATCTCGTA
CGATTTTGGGCACAAATGCCTCTGTAGCACGACCATCTGTTGTTGGGGAA
CGACGAAACCGATGTGACGGAGAGTGCCCTATTTTTCTCCTTTCTCACAA
GGCAACAGATCGTCAATCGGTGCCCTATAGCTCTTACTGTAGTTGGGTCG
AAAATATGGGTTATCTTGGCTTCCCGGTAATCAAACTTGAGGCCCTGCAT
CGTGCTGGAACAGGCCAATATTGAGAGCCTTTTGTCCCGTCCTGGGATGA
AGGGAAAAAAGGTCCCGCTTCCGGCTCCGCGACTCATTACAAGTGGTGAT
CTGGCATTTACACTTCATGAACTGTTGTAATGGCACGCCTACGACTACTG
CTGTGCCAGCATGCAGTGGAGTTGAGCTCACTGGTGGTCTACAAGTTATA
CATTGCTTTTCTCTTTGCACACATCCATTGCTGTCCACGCACACACCTAC
CTGCACCTTTCGTCACATTCACAAGTGTAAGTCAGTCGATCGACGTGATT
CCACGTGCACATTTGCAACCGTATTCGCGCGTCTTTGGCTGCTGCGTAAG
TCTTGTCTATATGCTCTGGTGTTTTCTGCTGCAATGACGTGCTACCTCCG
TCTAAATATAGCTCCCGGTACATACAAACAAGCATAGCTTGCCGAGGAAG
TACCCGCATGAAAACGCGCCATCGTCGCCACACATCGGCAAACAGTACTA
GGTAATGTTCTGCGCTCTGCACATATGTACTACTGCGAATATGCAATCTG
TTTCTACTGTCTACGTGTAGTGCTGCTGTACAGCTAGCGCCCGCACCTAG
GAACTTGGCGGTTAGGAACTCCATGCTCAACGTCACATCAAAACATCAGC
ACCATTTGTGGGCCCGTACAACAACCCGTGCACACTTCCAAAAACGGCCA
CAACTACCCGATCCCCGGCCAAGCCTAGAGGTTCTTCAGTGCGCGCGCAA
TCTGTACCAGCCAACACTATCTTACACCCAAAGAAGTGCCCCCTGCCGCA
TGCTTCAAACTGTTACAACCACAACGTTTGACCAGGAAAATCAATCAACA
GCCTTGGGGTCCTCAGAGCCGTGCAGGAACGGCAGTTCAAGCAACAACGG
CGGGCCGGCTCAGACGCGACCCGCGCACAGTTTGCGACGCAGCAGATGGC
CACCACCCGCGAAAAGCGCTCGATA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1210:27464..30288-

>mRNA_E-siliculosus-1a_F_contig1210.1342.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1342.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1342.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:27464..30288- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTCGAGCCCAGATGCAGCAGCTACAGACTACGAGTGGAGGAAGAC
ATCTGTCCCCTCGTGCTATCTTGACAAGGATGGCGTCGAGCCCAGATGCA
GCAGCTACAGACTACGAGTGGAGGAAGACATCTGTCCCCTCGTGCTATCT
TGACAAGGGAAAATCAATCAACAGCCTTGGGGTCCTCAGAGCCGTGCAGG
AACGGCAGTTCAAGCAACAACGGCGGGCCGGCTCAGACGCGACCCGCGCA
CAGTTTGCGACGCAGCAGATGGCCACCACCCGCGAAAAGCGCTCGATAGA
AAATCAATCAACAGCCTTGGGGTCCTCAGAGCCGTGCAGGAACGGCAGTT
CAAGCAACAACGGCGGGCCGGCTCAGACGCGACCCGCGCACAGTTTGCGA
CGCAGCAGATGGCCACCACCCGCGAAAAGCGCTCGATA
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