mRNA_E-siliculosus-1a_F_contig1210.1341.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1210.1341.1
Unique NamemRNA_E-siliculosus-1a_F_contig1210.1341.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1210.1341.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 1.660e-111
Identity = 184/200 (92.00%), Postives = 191/200 (95.50%), Query Frame = 1 
Query:    1 MAANDEHTTAKEQPRLSSRCRHHQQRKGTPRRSPEQSNRRPKEGEKMPTAIAAPASHRSGGGGDGTNRTARHEEPRASARSAGTAASFCSSKGGRGLPASYCGSGAPSGRTTSRSLTSSAAMSLTDYSTDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR 600
            M ANDEHTTAKEQ RLSSRCRHHQQ KGTPRRS E+SNRRPKEGE++P  IAAPASHRSGGGGDGTNRTARHEEP ASARSAGTAASF SSKGGRGLP++YCGSG PSGRTTSRSLTSSAA+SLTDY+TDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR
Sbjct:    1 MPANDEHTTAKEQSRLSSRCRHHQQCKGTPRRSLERSNRRPKEGEEIPATIAAPASHRSGGGGDGTNRTARHEEPTASARSAGTAASFSSSKGGRGLPSAYCGSGVPSGRTTSRSLTSSAAISLTDYATDTPRETVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR 200
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMP4_ECTSI1.660e-11192.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1210contigE-siliculosus-1a_F_contig1210:13685..15655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size603
Model size603
Exons4
Ec32 orthologEc-23_001090.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1210.1341.1prot_E-siliculosus-1a_F_contig1210.1341.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1210 13685..15655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.6096253-CDS-E-siliculosus-1a_F_contig1210:13684..137801622927730.6096253-CDS-E-siliculosus-1a_F_contig1210:13684..13780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 13685..13780 -
1696318658.0664012-CDS-E-siliculosus-1a_F_contig1210:13684..137801696318658.0664012-CDS-E-siliculosus-1a_F_contig1210:13684..13780Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 13685..13780 -
1622927730.6269288-CDS-E-siliculosus-1a_F_contig1210:14279..143881622927730.6269288-CDS-E-siliculosus-1a_F_contig1210:14279..14388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 14280..14388 -
1696318658.0742922-CDS-E-siliculosus-1a_F_contig1210:14279..143881696318658.0742922-CDS-E-siliculosus-1a_F_contig1210:14279..14388Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 14280..14388 -
1622927730.651483-CDS-E-siliculosus-1a_F_contig1210:15021..153931622927730.651483-CDS-E-siliculosus-1a_F_contig1210:15021..15393Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 15022..15393 -
1696318658.082019-CDS-E-siliculosus-1a_F_contig1210:15021..153931696318658.082019-CDS-E-siliculosus-1a_F_contig1210:15021..15393Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 15022..15393 -
1622927730.6713293-CDS-E-siliculosus-1a_F_contig1210:15629..156551622927730.6713293-CDS-E-siliculosus-1a_F_contig1210:15629..15655Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 15630..15655 -
1696318658.090022-CDS-E-siliculosus-1a_F_contig1210:15629..156551696318658.090022-CDS-E-siliculosus-1a_F_contig1210:15629..15655Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 15630..15655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1210.1341.1

>prot_E-siliculosus-1a_F_contig1210.1341.1 ID=prot_E-siliculosus-1a_F_contig1210.1341.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=201bp
MAANDEHTTAKEQPRLSSRCRHHQQRKGTPRRSPEQSNRRPKEGEKMPTA
IAAPASHRSGGGGDGTNRTARHEEPRASARSAGTAASFCSSKGGRGLPAS
YCGSGAPSGRTTSRSLTSSAAMSLTDYSTDTPRETVRTTTTMAMSTARAE
ATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHRLAAPPRTTR
*
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mRNA from alignment at E-siliculosus-1a_F_contig1210:13685..15655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1210.1341.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1341.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1971bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:13685..15655- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGCTAACGACGAACACACGACGTGAGTTGAGTGTGCCGTGGATCA
TTCGAGCAAAATGAAAAATTAAGTGGATAAGCGCGGCGGTACTCTACTCT
TTCGTTTCGAACTGCGACTGGCCATGCAAAGGCGCCACACCGCCAGTGAC
ACATGAAAAACGTCTACAGACTACATGTTATTGCGAGGACAACAAGCCGT
ACCCGAAACGTGTGCTGACATTTTCTATCCTTGTCTGTTGCGCATCCCCG
CCCGCCACTCAGAGCTAAGGAACAGCCTCGATTGTCATCGCGGTGTCGGC
ATCATCAGCAACGCAAGGGAACCCCTCGCCGCTCCCCCGAGCAGTCTAAC
AGACGACCGAAGGAAGGCGAAAAAATGCCCACAGCGATAGCCGCCCCAGC
TTCGCACAGAAGTGGTGGTGGTGGTGATGGTACCAATAGGACAGCGAGAC
ATGAAGAACCAAGGGCGAGCGCACGATCTGCAGGCACCGCTGCTTCTTTT
TGTTCTTCGAAGGGTGGGCGGGGGCTGCCTGCGTCGTACTGTGGAAGCGG
GGCTCCTTCGGGCAGAACAACGTCAAGATCGCTCACAAGTAGCGCAGCGA
TGAGCCTTACCGACTACTCCACAGACACTCCAAGGTGATCTAGTTATGCA
TATGAGAAGGGTTGTAGTTTTTGATAAGCCCACGGGCAGGATAAAACACG
AGACTACGTGCTCTCGCGACTCCAAGATTTTGGCATCAAGCCATCATCTA
CATGCGGCTGGTATATATGGAGGTTTTCTCAATACGGATGAACCTTTTCG
TCCCATGTGCTCCCAGGGCAGAATTTCCTTTTTTAGCGCATCTTGGTGAT
TTCAGCCAAATATTGCGTACGTAGTGTTTGCACAAGGAATAACGTGGTTG
CCTCGCAGATGTTCCCACAAACTTTCTAAGGAGAGATTTGGACGCTGCTG
CAGATGTTCTTGCTGTCGCGAGTACAGTTCGTCGTGGCCACATCAAGAGA
TCTGTGTACGGTTGGTACAGTTTGGAAAAAAAGCTTTAGCCTATCACCAC
CTTGCTATCACACCAACCGACGTGGATCACACGCCGCAGTCCAAGTTGTG
AATTGCCACGCGACCACAACGAACGCCCATGAGCAGCGCGTGGCGATATG
GGGGAAACCGATATGTTGCACCCGAAACTATTGCGTCATCACACGAAAGG
AATAGTACACGTTGGACCGACGACGGGTATCTCATCGTTCCTGTTTGTTA
CGTTCTGTTTTTGGAAGGGAGACCGTTCGTACGACGACAACCATGGCCAT
GAGCACGGCGAGAGCAGAGGCTACACTAGCCGTGCTGGAGGCGGAACGAG
CACAGTTGGAACATCGTCTGAAGAAGGTGAGACCAAGAGAAAAAAAAGGA
ATAAGTGTTTGAAAATGTAGGGGAGGAAGGATAGAACAAAAGCAGCTAGC
GCGAATATCCGAGTAGGCTATATTCTTGCTTCACTGTTTGACTTCTTGCA
ATTTGACCCTGTCTATATTTGGTGCTCAGCAGACTTGCCTCCCTCGACGA
AGAGCCTTGTTAAGCTTTCCCACGTGCATGTTGTTCATCCCACTTTCACG
TTCGCGATTATACAGCAATCCCATTCTCTTCGCCCCTTCAAAGCTGGAAG
AGAAGCATGGCCATTGGAGCGACAGCAGGCAAACGGTCTAGGAAACGTTA
CGGAGACAGAACAGCACAAATGTAGAGGGTGTCGCGCGTGACCTCTCCGA
TTGCGTAGTAGACATCACTTCTCGCCATTTGTGCGAACTCTCCCATGTCC
TCCTGGTTGAGTGTTAACCGCCCTGTTATCGTCGCCGCCACGGGCCGCTG
GCCTTGCGTTGTGTTTGGACCAAAGGTGGAGGACGAGCTGAGGCAGGAGC
GAATCTTGAGCAAGGAGAACAACAAAAAGCGTGGACACCGCCTTGCGGCA
CCGCCAAGAACGACCCGATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1210:13685..15655-

>mRNA_E-siliculosus-1a_F_contig1210.1341.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1341.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1341.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1206bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:13685..15655- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAGCTAACGACGAACACACGACATGGCAGCTAACGACGAACACACG
ACAGCTAAGGAACAGCCTCGATTGTCATCGCGGTGTCGGCATCATCAGCA
ACGCAAGGGAACCCCTCGCCGCTCCCCCGAGCAGTCTAACAGACGACCGA
AGGAAGGCGAAAAAATGCCCACAGCGATAGCCGCCCCAGCTTCGCACAGA
AGTGGTGGTGGTGGTGATGGTACCAATAGGACAGCGAGACATGAAGAACC
AAGGGCGAGCGCACGATCTGCAGGCACCGCTGCTTCTTTTTGTTCTTCGA
AGGGTGGGCGGGGGCTGCCTGCGTCGTACTGTGGAAGCGGGGCTCCTTCG
GGCAGAACAACGTCAAGATCGCTCACAAGTAGCGCAGCGATGAGCCTTAC
CGACTACTCCACAGACACTCCAAGAGCTAAGGAACAGCCTCGATTGTCAT
CGCGGTGTCGGCATCATCAGCAACGCAAGGGAACCCCTCGCCGCTCCCCC
GAGCAGTCTAACAGACGACCGAAGGAAGGCGAAAAAATGCCCACAGCGAT
AGCCGCCCCAGCTTCGCACAGAAGTGGTGGTGGTGGTGATGGTACCAATA
GGACAGCGAGACATGAAGAACCAAGGGCGAGCGCACGATCTGCAGGCACC
GCTGCTTCTTTTTGTTCTTCGAAGGGTGGGCGGGGGCTGCCTGCGTCGTA
CTGTGGAAGCGGGGCTCCTTCGGGCAGAACAACGTCAAGATCGCTCACAA
GTAGCGCAGCGATGAGCCTTACCGACTACTCCACAGACACTCCAAGGGAG
ACCGTTCGTACGACGACAACCATGGCCATGAGCACGGCGAGAGCAGAGGC
TACACTAGCCGTGCTGGAGGCGGAACGAGCACAGTTGGAACATCGTCTGA
AGAAGGGAGACCGTTCGTACGACGACAACCATGGCCATGAGCACGGCGAG
AGCAGAGGCTACACTAGCCGTGCTGGAGGCGGAACGAGCACAGTTGGAAC
ATCGTCTGAAGAAGGTGGAGGACGAGCTGAGGCAGGAGCGAATCTTGAGC
AAGGAGAACAACAAAAAGCGTGGACACCGCCTTGCGGCACCGCCAAGAAC
GACCCGATGAGTGGAGGACGAGCTGAGGCAGGAGCGAATCTTGAGCAAGG
AGAACAACAAAAAGCGTGGACACCGCCTTGCGGCACCGCCAAGAACGACC
CGATGA
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