mRNA_E-siliculosus-1a_F_contig1210.1340.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1210.1340.1
Unique NamemRNA_E-siliculosus-1a_F_contig1210.1340.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1210contigE-siliculosus-1a_F_contig1210:9206..9706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size354
Model size354
Exons2
Ec32 orthologEc-23_001070.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.551637-CDS-E-siliculosus-1a_F_contig1210:9205..93121622927730.551637-CDS-E-siliculosus-1a_F_contig1210:9205..9312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 9206..9312 -
1696318658.0457196-CDS-E-siliculosus-1a_F_contig1210:9205..93121696318658.0457196-CDS-E-siliculosus-1a_F_contig1210:9205..9312Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 9206..9312 -
1622927730.5677822-CDS-E-siliculosus-1a_F_contig1210:9459..97061622927730.5677822-CDS-E-siliculosus-1a_F_contig1210:9459..9706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 9460..9706 -
1696318658.0568-CDS-E-siliculosus-1a_F_contig1210:9459..97061696318658.0568-CDS-E-siliculosus-1a_F_contig1210:9459..9706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1210 9460..9706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1210.1340.1prot_E-siliculosus-1a_F_contig1210.1340.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1210 9206..9706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1210.1340.1

>prot_E-siliculosus-1a_F_contig1210.1340.1 ID=prot_E-siliculosus-1a_F_contig1210.1340.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
MQRLCTERPSRDSTWQRRGATGTECTGLRGVRGPVAGGCRRLRRSRQDHR
ARDAVAECRDHPSTHRRRVRREERGDTSAGLRGTMRTNYITGVYRCMGEY
GGGSQGCMSNVLRAACT*
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mRNA from alignment at E-siliculosus-1a_F_contig1210:9206..9706-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1210.1340.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1340.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=501bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:9206..9706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGCGCCTGTGTACTGAGCGGCCGAGCAGGGACAGCACTTGGCAGCG
ACGGGGGGCCACGGGGACAGAGTGTACGGGCCTGCGGGGTGTGCGGGGCC
CCGTCGCTGGAGGCTGCCGTAGATTACGGAGATCGCGCCAAGACCACCGC
GCCCGAGATGCAGTTGCAGAGTGCAGAGATCACCCTTCCACACATCGAAG
ACGTGTGAGGAGAGAAGAGCGAGGAGATACCTCTGCTGGATTGAGGGGTG
AGTTTTGTCCTTGTTCTTTCGTTTGCCTTTTTATGTGTTATTGTACCTCG
TGTGAAATGGTTGCAAGATGATACAGCGTGTGTAAGAGTAGTGTTTAGGC
TGCATAGGTGCTCGTTGGCTCTATTTCCCCTCATTAGCAAACAGGCACCA
TGCGAACGAATTACATCACGGGTGTCTACAGATGCATGGGAGAGTACGGC
GGAGGCAGCCAGGGGTGTATGAGCAATGTCCTTAGAGCTGCGTGCACATA
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1210:9206..9706-

>mRNA_E-siliculosus-1a_F_contig1210.1340.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1340.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1340.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:9206..9706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGCGCCTGTGTACTGAGCGGCCGAGCAGGGACAGCACTTGGCAGCG
ACGGGGGGCCACGGGGACAGAGTGTACGGGCCTGCGGGGTGTGCGGGGCC
CCGTCGCTGGAGGCTGCCGTAGATTACGGAGATCGCGCCAAGACCACCGC
GCCCGAGATGCAGTTGCAGAGTGCAGAGATCACCCTTCCACACATCGAAG
ACGTGTGAGGAGAGAAGAGCGAGGAGATACCTCTGCTGGATTGAGGGATG
CAGCGCCTGTGTACTGAGCGGCCGAGCAGGGACAGCACTTGGCAGCGACG
GGGGGCCACGGGGACAGAGTGTACGGGCCTGCGGGGTGTGCGGGGCCCCG
TCGCTGGAGGCTGCCGTAGATTACGGAGATCGCGCCAAGACCACCGCGCC
CGAGATGCAGTTGCAGAGTGCAGAGATCACCCTTCCACACATCGAAGACG
TGTGAGGAGAGAAGAGCGAGGAGATACCTCTGCTGGATTGAGGGGCACCA
TGCGAACGAATTACATCACGGGTGTCTACAGATGCATGGGAGAGTACGGC
GGAGGCAGCCAGGGGTGTATGAGCAATGTCCTTAGAGCTGCGTGCACATA
AGCACCATGCGAACGAATTACATCACGGGTGTCTACAGATGCATGGGAGA
GTACGGCGGAGGCAGCCAGGGGTGTATGAGCAATGTCCTTAGAGCTGCGT
GCACATAA
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