mRNA_E-siliculosus-1a_F_contig1210.1339.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: D7FMP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP2_ECTSI) HSP 1 Score: 523 bits (1348), Expect = 3.300e-173 Identity = 323/368 (87.77%), Postives = 325/368 (88.32%), Query Frame = 3
Query: 408 MQLLRRTCGPLPVSVSALALSAGRRTSLSLPRAAAAARTDGVAARTPAWVPGGVLRRGGGSCRGGGGLFAELQPGEVEVPLVQAICDELVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSERDFQGLTHSLCMPVFGGPEACFEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFRVETPLTSRNGGTAVVAAPTAGADDGGVEGERESGPSANDEXXXXXXXXXXXX---ERVVLREVPEPEGLPRWSRYYGPSVTLR 1493
MQLLRRTCGPLPVSVSALALSAGRRTSLSLPRAAA ARTD VAARTPAWVPGGVLRRGGGS RGGGGLFAELQ GE EVPLVQAICDELVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSERD QGLT SLCMPVFGGPEACFE+TVFVL KGGEIPLHDHPNMAVLSRILFGTL+VTSYD EE XXXXXXXXXXXXXXXXXX XXXXXX RVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDSSR RKCSYFR ETPLTSRNGGTAVVAA TAGADDGGVEGERE GP XXXXXXXXXXXX ERVVLREVPEPEGLPRWSRYYGPSVTLR
Sbjct: 1 MQLLRRTCGPLPVSVSALALSAGRRTSLSLPRAAAVARTDEVAARTPAWVPGGVLRRGGGSFRGGGGLFAELQSGEEEVPLVQAICDELVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSERDLQGLTQSLCMPVFGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDMEEXXXXXXXXXXXXXXXXXXXTFADAELRRKEAQRVVFAXXXXXXEGGRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDSSRGRKCSYFRAETPLTSRNGGTAVVAARTAGADDGGVEGEREGGPXXXXXXXXXXXXXXXXXXXXERVVLREVPEPEGLPRWSRYYGPSVTLR 368
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: A0A836CGD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGD4_9STRA) HSP 1 Score: 104 bits (259), Expect = 6.590e-21 Identity = 77/278 (27.70%), Postives = 115/278 (41.37%), Query Frame = 3
Query: 672 LVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSERD------FQGLTHSLCMPVFGGPEACFEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDSSRRKCSYFRVETPLTSRNGGTAVVAAPTAGADDGGVEGERESGPSANDEXXXXXXXXXXXXERVVLREVPEPEGLPRWSRYYGPSVT 1487
L + D R G D +I +V +++ RD+GL E D ++G SL +P+ + F++ VF++ KG +PLHDHP+M VLS++L G L + S+D ED VTA ++ L P GN+H A AV D+L+PPY + RR CSY+++ + N G A + V+L++VPEP GLP + Y GPS+T
Sbjct: 45 LQRIYDSLNTDRSGDD--LIEQVTAILNTATLRDVGLQEGDLAGDRIWKGRQQSLYIPI--AHTSKFDIAVFIIKKGNSLPLHDHPDMTVLSKLLHGKLRLKSFDWIEDSRQSKGSATTVHAATCINDR-----------------------EVTAPADAWRLGPHNGNLHDLEATETSAVLDILLPPYGNGRR-CSYYKMAQDPVAGNRGNASL---------------------------------------VLLKQVPEPRGLPEFYPYTGPSIT 255
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: UPI0020246C98 (plant cysteine oxidase 5-like isoform X2 n=2 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020246C98) HSP 1 Score: 90.5 bits (223), Expect = 1.000e-16 Identity = 65/221 (29.41%), Postives = 95/221 (42.99%), Query Frame = 3
Query: 651 VQAICDELVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSE-----RDFQGLTHSLCMPVFGGPEAC-------------FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
+Q + + A P G I KV ++DK++P D+GL + R++ G H GGP++ F + +F + IPLH+HP M VLS++++G+L V SYD + +TA P+ +L P S GN+HSFRA T CA+FD+L PPY S R C+YFR
Sbjct: 5 IQRLYNTCRAAFSPNGPV----SEEAIEKVRAMLDKIKPSDVGLEQEAQWVRNWSGTVHERN----GGPQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLIYGSLFVNSYDWLD-------------------------LPEPADHLEARPAKLVKDTEMTAPCPTTILYPTSGGNIHSFRAQTPCAIFDILAPPYSSEHGRHCTYFR 192
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: A0A6P4AX05_ZIZJJ (Cysteine dioxygenase n=3 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4AX05_ZIZJJ) HSP 1 Score: 90.5 bits (223), Expect = 2.060e-16 Identity = 65/221 (29.41%), Postives = 95/221 (42.99%), Query Frame = 3
Query: 651 VQAICDELVAVTDPEGEARMGSDSPVISKVLRLMDKLQPRDLGLSE-----RDFQGLTHSLCMPVFGGPEAC-------------FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
+Q + + A P G I KV ++DK++P D+GL + R++ G H GGP++ F + +F + IPLH+HP M VLS++++G+L V SYD + +TA P+ +L P S GN+HSFRA T CA+FD+L PPY S R C+YFR
Sbjct: 5 IQRLYNTCRAAFSPNGPV----SEEAIEKVRAMLDKIKPSDVGLEQEAQWVRNWSGTVHERN----GGPQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLIYGSLFVNSYDWLD-------------------------LPEPADHLEARPAKLVKDTEMTAPCPTTILYPTSGGNIHSFRAQTPCAIFDILAPPYSSEHGRHCTYFR 192
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: A0A0M0K5E7_9EUKA (2-aminoethanethiol dioxygenase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K5E7_9EUKA) HSP 1 Score: 85.9 bits (211), Expect = 3.440e-15 Identity = 63/181 (34.81%), Postives = 76/181 (41.99%), Query Frame = 3
Query: 750 MDKLQPRDLGLSERDFQGLTHSLCMPVFGGP--------EACFEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDS-SRRKCSYFRVETP 1265
MD+L DLG++ GLT GGP + V +FVL G IPLHDHP M+VLS++LFG LEVTS+D V A P+ L P GN+H F A A+FDVL PPYD S R C Y+ VE P
Sbjct: 1 MDELTAEDLGVTTA---GLTP-------GGPVGYHHVYADQDISVGIFVLPAGSAIPLHDHPGMSVLSKVLFGKLEVTSFDRP--------LPSASPSPPPPKFGGPFTLFGGRGASQQLQCAAPVRHTVVAPCPTLRLDPVRGNIHEFVAVEHTAIFDVLTPPYDDRSGRSCHYYEVEAP 163
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: UPI001FB19433 (plant cysteine oxidase 5-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB19433) HSP 1 Score: 83.6 bits (205), Expect = 4.500e-14 Identity = 61/201 (30.35%), Postives = 85/201 (42.29%), Query Frame = 3
Query: 708 MGSDSPV----ISKVLRLMDKLQPRDLGLSER-----------DFQGLTHSLCMPV-FGGPEAC--FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTPSEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
+ D PV + K+ L+DK++P D+GL + + + TH P+ + C F + +F + IPLH+HPNM VLS++LFGTL VTSYD + + L S GN+H FRA T CA+FD+L PPY S R C+YFR
Sbjct: 15 LSQDGPVSEEGLVKIRGLLDKIKPSDVGLEQEAQLVRTWTDPTNGRNGTHRSTPPIKYLRLSECESFTMGIFCMPPSSIIPLHNHPNMTVLSKLLFGTLHVTSYD------------------------WISTLDSSQDIKSRPAKLVKDCDMIAPCGTTVLYPTSGGNIHCFRAVTPCAIFDILSPPYSSEDGRHCTYFR 191
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: UPI00053C6B50 (plant cysteine oxidase 5 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6B50) HSP 1 Score: 83.2 bits (204), Expect = 6.870e-14 Identity = 62/205 (30.24%), Postives = 92/205 (44.88%), Query Frame = 3
Query: 699 EARMGSDSPV----ISKVLRLMDKLQPRDLGLSE-----RDFQGLT-------HSLCMPVFGGPEAC--FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
++ +D PV + KV +++K++P D+GL + R + G H+L + C F + +F + IPLH+HP M VLS++++G+L V SYD + +TA PS LL P S GN+H F+A T CA+FD+L PPY SS R C+YFR
Sbjct: 13 KSSFSTDGPVSEEGLEKVRNVLEKIKPSDVGLEQEAQLVRTWSGPVNVHNGGHHTLPAIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLVYGSLHVKSYDWIDTDAPEPDGPLQARAGKLVKDT-----------------------EMTAPCPSTLLYPTSGGNIHCFKAITHCAIFDILSPPYSSSHGRHCTYFR 194
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: A0A834TL90_9FABA (Cysteine dioxygenase n=2 Tax=Caesalpinioideae TaxID=3804 RepID=A0A834TL90_9FABA) HSP 1 Score: 83.2 bits (204), Expect = 7.150e-14 Identity = 63/205 (30.73%), Postives = 91/205 (44.39%), Query Frame = 3
Query: 699 EARMGSDSPV----ISKVLRLMDKLQPRDLGLSE-----RDFQGL------THSLCMPV-FGGPEAC--FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
+A D PV I KV +++++P D+GL + R++ G H P+ + C F + +F + IPLH+HP M VLS++L+G+L V SYD + +TA TP+ +L P S GN+H FRA T CA+FD+L PPY S R C+YFR
Sbjct: 13 KASFSPDGPVSEEAIEKVREKLERIKPSDVGLEQEAQVVRNWAGPMLERNGNHQTLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLLYGSLYVKSYDWID----------------------LPGYAIPADPTEARPAKLVKDTEMTAPTPTTILYPTSGGNIHCFRAITPCAIFDILAPPYSSEHGRHCTYFR 195
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: A0A5N6KZ82_9ROSI (Cysteine dioxygenase n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6KZ82_9ROSI) HSP 1 Score: 82.0 bits (201), Expect = 8.410e-14 Identity = 59/183 (32.24%), Postives = 84/183 (45.90%), Query Frame = 3
Query: 753 DKLQPRDLGLSE-----RDFQGL------THSLCMPV-FGGPEAC--FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
DK++P D+GL + R++ G +H P+ + C F + +F + IPLH+HP M VLS++++GTL V SYD + VTA +P+ +L P S GN+HSFRA T CA+FD+L PPY S R C+YFR
Sbjct: 3 DKIKPTDVGLEQEAQLVRNWSGTANERNGSHQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMIVLSKLVYGTLYVNSYDWLD-------------------------LPEPADPLQARPAKLVRDVEVTAPSPTTILYPTSGGNIHSFRALTPCAIFDILAPPYSSEDGRHCTYFR 160
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Match: UPI001C726B41 (plant cysteine oxidase 4-like isoform X3 n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C726B41) HSP 1 Score: 82.0 bits (201), Expect = 1.070e-13 Identity = 58/191 (30.37%), Postives = 83/191 (43.46%), Query Frame = 3
Query: 729 ISKVLRLMDKLQPRDLGL------------SERDFQGLTHSLCMPVFGGPEAC--FEVTVFVLAKGGEIPLHDHPNMAVLSRILFGTLEVTSYDTEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVTAATPSFLLTP-SEGNVHSFRAPTACAVFDVLIPPYDSSR-RKCSYFR 1253
+ KV +DK++P D+GL S + G S+ + C F + +F + IPLH+HP M VLS++++GTL V SYD + + A +P+ +L P S GN+HSFRA T CA+FD+L PPY S R C+YFR
Sbjct: 27 LKKVRAKLDKIKPSDVGLEQEAQLVRSWSASANEHNGSHQSMPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMIVLSKLVYGTLHVNSYDWLD-------------------------LPGPADPLQARPAKLNKDVEMAAPSPTTILYPRSGGNIHSFRALTPCAIFDILSPPYSSEHDRNCTYFR 192 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1210.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1210.1339.1 >prot_E-siliculosus-1a_F_contig1210.1339.1 ID=prot_E-siliculosus-1a_F_contig1210.1339.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=363bp MQLLRRTCGPLPVSVSALALSAGRRTSLSLPRAAAAARTDGVAARTPAWVback to top mRNA from alignment at E-siliculosus-1a_F_contig1210:1274..9706- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1210.1339.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1339.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8433bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:1274..9706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1210:1274..9706- >mRNA_E-siliculosus-1a_F_contig1210.1339.1 ID=mRNA_E-siliculosus-1a_F_contig1210.1339.1|Name=mRNA_E-siliculosus-1a_F_contig1210.1339.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2178bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1210:1274..9706- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |