mRNA_E-siliculosus-1a_F_contig12089.1331.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12089.1331.1
Unique NamemRNA_E-siliculosus-1a_F_contig12089.1331.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 8.890e-54
Identity = 94/98 (95.92%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:   37 GEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            GEYKSQSLEISNLSDMPTVAIAR ESKA SCKPARLDIPAHG AEMKVEYVPRKINYKYRKTVTVMN HNPHGHADVEIAASNTDTHHVLYHSHFYKV
Sbjct:  912 GEYKSQSLEISNLSDMPTVAIARVESKAVSCKPARLDIPAHGTAEMKVEYVPRKINYKYRKTVTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKV 1009
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: A0A6H5KUV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV2_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.920e-40
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:  109 ESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            E +A SCKPARLDIPAHGKAEMKVEYVPRKINYKYRKT+TVMN HNPHGHADVEIAASNTDTHHVLYHSHFYKV
Sbjct:  134 EREAVSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTLTVMNAHNPHGHADVEIAASNTDTHHVLYHSHFYKV 207
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: A0A835YT04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT04_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.190e-27
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   37 GEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            GEY+S+ + ++N S++P  AIA   SKA SC P  L IP  G A++K+EYVPRKIN  YRKT+T++N  N  G  ++EI A+N DTHH+LYHS FYKV
Sbjct: 2096 GEYRSEHVMVTNHSELPAAAIAHVLSKAVSCTPTNLSIPPRGSADLKIEYVPRKINSHYRKTITLINCFNARGTREIEIRAANMDTHHILYHSAFYKV 2193
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: S2KJV0_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2KJV0_MUCC1)

HSP 1 Score: 66.6 bits (161), Expect = 1.720e-10
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   28 TKKGEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            T  G  KSQS+ I+NLS++       FESK  SC    L I      E+K++  PRKIN  Y++ + ++N  N      +E+ + N D H V +HS FY++
Sbjct:  533 TDVGTQKSQSISITNLSEICAHVELVFESKVISCTQGELLIQPKSTVELKLDIYPRKINTSYKRQIKLVNYLNRENDQIIEVCSRNVDNHKVTFHSLFYQL 633
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: A0A168JHR5_MUCCL (Uncharacterized protein n=3 Tax=Mucor TaxID=4830 RepID=A0A168JHR5_MUCCL)

HSP 1 Score: 66.2 bits (160), Expect = 2.350e-10
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   28 TKKGEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            T  G  KSQS+ I+NLS++       FESK  SC    L I      E+K++  PRKIN  Y++ + ++N  N      +E+ + N D H V +HS FY++
Sbjct:  520 TDVGTQKSQSISITNLSEICAHVELVFESKVISCTQGELLIQPKSTVELKLDIYPRKINPSYKRQIKLVNYLNRENDQIIEVCSRNVDNHKVTFHSLFYQL 620
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: A0A0B7NLP0_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NLP0_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 3.200e-10
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   28 TKKGEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            T  G  KSQ++ I+NLS++       FESK  SC    L I      E+K++  PRKIN  Y++ + ++N  N      +E+ + N D H V +HS FY++
Sbjct:  526 TDVGAQKSQTISITNLSEICAHVELVFESKVISCTQGELLIQPKSTVELKLDIYPRKINTSYKRQIKLVNYLNRDNDQIIEVCSKNVDNHRVTFHSLFYQL 626
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BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Match: A0A8H7QLN4_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QLN4_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 2.070e-9
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   28 TKKGEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDIPAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHHVLYHSHFYKV 330
            T  G  KSQS+ I+N+S++       FESK  SC    L I      E+K++  PRKIN  Y++ + ++N  N      +E+ + N D + V +HS FY++
Sbjct:  527 TDVGTQKSQSISITNISEICAHVELVFESKVISCTQRELLIQPKSTLELKLDIYPRKINTSYKRQINLVNYLNRENDQIIEVCSKNVDNYKVTFHSLFYQL 627
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12089.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHH6_ECTSI8.890e-5495.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUV2_9PHAE2.920e-4093.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YT04_9STRA3.190e-2755.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S2KJV0_MUCC11.720e-1036.63Uncharacterized protein n=1 Tax=Mucor circinelloid... [more]
A0A168JHR5_MUCCL2.350e-1036.63Uncharacterized protein n=3 Tax=Mucor TaxID=4830 R... [more]
A0A0B7NLP0_9FUNG3.200e-1035.64Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A8H7QLN4_9FUNG2.070e-934.65Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12089contigE-siliculosus-1a_F_contig12089:359..1287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size333
Model size333
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs28MMI@1,2QU5A@2759
Seed eggNOG ortholog2880.D8LHH6
Seed ortholog evalue2.2e-46
Seed ortholog score191.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.554288-CDS-E-siliculosus-1a_F_contig12089:358..5741622927728.554288-CDS-E-siliculosus-1a_F_contig12089:358..574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12089 359..574 -
1696318656.9354954-CDS-E-siliculosus-1a_F_contig12089:358..5741696318656.9354954-CDS-E-siliculosus-1a_F_contig12089:358..574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12089 359..574 -
1622927728.5660317-CDS-E-siliculosus-1a_F_contig12089:1170..12871622927728.5660317-CDS-E-siliculosus-1a_F_contig12089:1170..1287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12089 1171..1287 -
1696318656.9465086-CDS-E-siliculosus-1a_F_contig12089:1170..12871696318656.9465086-CDS-E-siliculosus-1a_F_contig12089:1170..1287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12089 1171..1287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12089.1331.1prot_E-siliculosus-1a_F_contig12089.1331.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12089 359..1287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12089.1331.1

>prot_E-siliculosus-1a_F_contig12089.1331.1 ID=prot_E-siliculosus-1a_F_contig12089.1331.1|Name=mRNA_E-siliculosus-1a_F_contig12089.1331.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
MARTPPPPPTKKGEYKSQSLEISNLSDMPTVAIARFESKAGSCKPARLDI
PAHGKAEMKVEYVPRKINYKYRKTVTVMNGHNPHGHADVEIAASNTDTHH
VLYHSHFYKVS
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mRNA from alignment at E-siliculosus-1a_F_contig12089:359..1287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12089.1331.1 ID=mRNA_E-siliculosus-1a_F_contig12089.1331.1|Name=mRNA_E-siliculosus-1a_F_contig12089.1331.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=929bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12089:359..1287- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACGTACCCCCCCCCCCCCTCCAACGAAAAAAGGCGAGTACAAGAG
CCAGAGCTTGGAGATATCGAACCTCAGCGACATGCCGACCGTCGCAATCG
CTCGTTTCGAGTCCAAGGTAAGCTTAGTTTTTGTTGCCCCACGGTTGGCG
TTAAGTTTCCCCGAGATTTTTTTTTCTTTTTGCTGTTGCCGCACGAGTGT
TCGGCGGGTTTTTAGAAAGTACGCATAATCTCACAGAAAGACCACCCGTT
CGAGACAGTACCACAGTTCGGGTTTGGCCCCGCGAACGTAGAGCTTTCAT
CCCCATGGGGAAGACTGTGGCGGTGTTTCAGCCCCGCGACGAGGGATTCG
GAGCACACGTGACCACACGAGGCGGACAACAGTCAGCCACCCCATAGGCC
ACTGCTCACGTACCCACTCATGGCTTGATGCCCCCCCCACCCCCCCCCCC
TGCGGCGAGAATCTTTTACCGATGATTTGCGCTTGGCGTACAAATATTGC
CTCTGCCTAGTAGTCGCGGGATGTCATCCCAATGATGCAGCCCATCTCGC
CACATCTGTGAGAGAGATGAACGGCGAAGCTCCTACTGTCAACTCAACTT
ACCCTGAACATGTCAAGTGTGTACAGGCTAGTGCCTGTTAGCGCATGGAT
GCAAGGCGGTGTCCTACAATATCGTGCAACGAAAGGATTAATGCCCCCCC
CCCCGCCGCACAGGCGGGTAGCTGCAAGCCGGCCAGGCTCGATATCCCCG
CGCACGGCAAGGCCGAGATGAAGGTCGAGTACGTGCCGCGCAAGATCAAC
TACAAGTACCGGAAGACGGTGACGGTGATGAACGGCCACAACCCCCACGG
CCACGCGGACGTGGAGATCGCAGCGAGCAACACGGACACCCACCACGTGC
TCTACCACTCGCACTTTTACAAGGTGAGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12089:359..1287-

>mRNA_E-siliculosus-1a_F_contig12089.1331.1 ID=mRNA_E-siliculosus-1a_F_contig12089.1331.1|Name=mRNA_E-siliculosus-1a_F_contig12089.1331.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12089:359..1287- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACGTACCCCCCCCCCCCCTCCAACGAAAAAAGGCGAGTACAAGAG
CCAGAGCTTGGAGATATCGAACCTCAGCGACATGCCGACCGTCGCAATCG
CTCGTTTCGAGTCCAAGATGGCACGTACCCCCCCCCCCCCTCCAACGAAA
AAAGGCGAGTACAAGAGCCAGAGCTTGGAGATATCGAACCTCAGCGACAT
GCCGACCGTCGCAATCGCTCGTTTCGAGTCCAAGGCGGGTAGCTGCAAGC
CGGCCAGGCTCGATATCCCCGCGCACGGCAAGGCCGAGATGAAGGTCGAG
TACGTGCCGCGCAAGATCAACTACAAGTACCGGAAGACGGTGACGGTGAT
GAACGGCCACAACCCCCACGGCCACGCGGACGTGGAGATCGCAGCGAGCA
ACACGGACACCCACCACGTGCTCTACCACTCGCACTTTTACAAGGTGAGT
GCGGGTAGCTGCAAGCCGGCCAGGCTCGATATCCCCGCGCACGGCAAGGC
CGAGATGAAGGTCGAGTACGTGCCGCGCAAGATCAACTACAAGTACCGGA
AGACGGTGACGGTGATGAACGGCCACAACCCCCACGGCCACGCGGACGTG
GAGATCGCAGCGAGCAACACGGACACCCACCACGTGCTCTACCACTCGCA
CTTTTACAAGGTGAGT
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