mRNA_E-siliculosus-1a_F_contig12062.1322.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: UPI001EF10CA7 (ribonuclease E n=2 Tax=Halomonas profundi TaxID=2852117 RepID=UPI001EF10CA7) HSP 1 Score: 432 bits (1112), Expect = 9.760e-137 Identity = 300/500 (60.00%), Postives = 329/500 (65.80%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPV-TKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNESAGKGAPQKEPRRDAARENQRAEATKQP----------MDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAIGAETVERMP-------------------ESPINTAKQPVEATAPNAEDPAAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKAT---PEAHAETAQE 1401
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDH+DEDDTQSLSSFELSTDT+VGKEP PSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAP TK A S+QPSVIGRFMRGFAKLLGSDD AEP P+P V APR+ +ER QRP+R ER DSN SR++ XXXXXXXXX GPSR X +NAQ+S+N +KDS+ N + A K A QKEPRR+A EA KQP DD KPKRTRNNPRNR+R QA+NP+AEAEQLKLQ EA +EAL++ +E P +A A A N P A + + + TT +RP N KAR+STHQRRQPKA PEA QE
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHIDEDDTQSLSSFELSTDTDVGKEPAPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPXXXXXXXXTKAAAAPSEQPSVIGRFMRGFAKLLGSDDTSAEPAPAPKVETPAPRRSTERXXXXXXXXXXQRPARGERNDSNN---SRTEXXXXXXXXXXXXXXPRSSSTPRPVSDDNSDKRSGPSRTRNXRRHPQQNESNAQDSVNTAKDSHSN--DIASKPAAQKEPRREAXXXXXXXEAVKQPASTDVQPKAKQDDDKPKRTRNNPRNRSRTQAINPQAEAEQLKLQAEAPSEALETTPTPSEASAEQPVVSXXXXXXXXXXXXXXXXXXXXESADNDNAALADNVALPEV-APSQDAIDTDNTTTAERPVTENAKARRSTHQRRQPKAAVTAPEAEIAEQQE 887
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A246S5H1_9GAMM (Ribonuclease E n=1 Tax=Halomonas campaniensis TaxID=213554 RepID=A0A246S5H1_9GAMM) HSP 1 Score: 422 bits (1086), Expect = 6.670e-133 Identity = 332/513 (64.72%), Postives = 361/513 (70.37%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNE--------------------------------SAGKGAPQKEPRRDAARENQRAEATKQPMDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAIGAETV---ERMPESPINTAKQPVEATAPNAEDP---AAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKA-TPEAHAETA----QEDTI 1410
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTE+GKEP PSF+PPAQRAEAAVKSVTHNAPAPASLQTEEKAP A APV K APV S+QPSVIGRF+RGFAKLLGSD++ AE TP P V PRKQSER+P QRSNESRQRPS RGDSN R E ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXX A K A K P EA DDGKPKRTRNNPRNRTR +A+NP+AEAEQLKLQ EAQ EA ++ A+ E++ ++ N A + + A N +P AAEA + ++ DATT D+PAAVN KARKSTHQRRQPKA +P TA Q+D+I
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEIGKEPAPSFMPPAQRAEAAVKSVTHNAPAPASLQTEEKAPVA--APVAKAAPVASEQPSVIGRFIRGFAKLLGSDESSAETTPEPKVETPTPRKQSERRPSQRSNESRQRPS---RGDSNARPEPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAAKSAEAKNP-----------EAK---QDDGKPKRTRNNPRNRTRTKAINPQAEAEQLKLQAEAQNEAPAAMPEPADAPAAEEQVGKAATNDAPIALGSDAGNTAEPEAAAAEAPEPKAEQAEDATTADQPAAVNPKARKSTHQRRQPKAASPAEQTSTASTVEQDDSI 887
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A7Z0N514_9GAMM (Ribonuclease E n=1 Tax=Halomonas sedimenti TaxID=2729618 RepID=A0A7Z0N514_9GAMM) HSP 1 Score: 420 bits (1080), Expect = 8.020e-132 Identity = 322/505 (63.76%), Postives = 351/505 (69.50%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GPSRXXXXXXXXXXXXNNAQESINVSKDSN----GNVNESAGKGAPQ--------------------KEPRRDAARENQRAEATKQPMDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAIGAE---TVERMPESPINTAKQPVEATAPNAEDP---AAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKATPEAH----AETAQED 1404
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEP PSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPA +AP K APV S+QPSVIGRF+RGFAKLLGSD++ AE TP P + +PRK SERK +Q S+E RQ+ S RGD+ RNE XXXXXXXXXXXXXXXXXXXXXXXXXXXX GPSR N QES + N + S GK K P E++ E TKQ DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ EA+ EA E T E++ ++ N A + + A N+ +P AA+A DATT DRP A N KARKSTHQRRQPKA A A T ++D
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPAPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPA--TAPAAKAAPVASEQPSVIGRFIRGFAKLLGSDESSAEATPEPKIETPSPRKPSERKTNQXSSEPRQK---SSRGDNASRNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRSGPSRTRNRRRHPQQDDANGQESAKAPRKENQADSSSKESSNGKXXXXXXXXXXXXXXXXXXXXXXTAKSP------ESKNLE-TKQ--DDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQAEAKNEARAVTPEPNEAPATEEQVAKAATNDAPIALGSDAGNSAEPEAAAADAPESNAXXXDDATTADRPVAENAKARKSTHQRRQPKAASPAEQTSTASTVEQD 884
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A0C3I7Y2_9GAMM (Ribonuclease E n=7 Tax=Halomonas TaxID=2745 RepID=A0A0C3I7Y2_9GAMM) HSP 1 Score: 412 bits (1060), Expect = 8.510e-129 Identity = 299/507 (58.97%), Postives = 323/507 (63.71%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNESAGKG------------------APQKEPRRDAA---RENQRAEATKQP--------MDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAIGAE---TVERMPESPINTAKQPVEATAPNAEDP---AAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKATPEAH----AETAQED 1404
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA AP K APVTS+QPSVIGRF+RGFAKLLGSD++ E TP P V APRK S R + N XXXXXXXXXXXX GPSR N QES + N + S A QKE RRD R++QR K DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ EAQ EA AE E++ ++ N + + A N +P AA+A + ++ DATT DRP A N KARKSTHQRRQPKA A A T ++D
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA--APAAKAAPVTSEQPSVIGRFIRGFAKLLGSDESNTEATPEPKVETPAPRKPSXXXXXXXXXXXXXXXXRGDNASRNXXXXXXXXXXXXXXXXXXXXXXXXXSNTPRPASDDSSDKRSGPSRTRNRRRHPQQDDANGQESAKAPRKENQADSSSKXXXXXXXXXXXXXXXXXXXXXAAQKESRRDGGDKNRDSQRDATAKSSESKNLETKQDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQAEAQNEASAVTPEPAEDPAAEEQVGKAATNDTTIALGSDAGNTAEPEAAAADAPESDAEQADDATTADRPVAENAKARKSTHQRRQPKAASPAEQTSTASTVEQD 898
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A265DXN2_9GAMM (Ribonuclease E n=2 Tax=Halomonas boliviensis TaxID=223527 RepID=A0A265DXN2_9GAMM) HSP 1 Score: 406 bits (1044), Expect = 1.170e-126 Identity = 303/519 (58.38%), Postives = 323/519 (62.24%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVN--------------ESAGKGAPQKEPRRDAARE----NQRAEATKQP--------MDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVA------------------------IGAETVERMPESPIN-TAKQPV---EATAPNAEDPAAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKATPEAHAETA 1395
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENS+QIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNP+MDTPHYDVQRLRDDHLDEDDTQ+LSSFELSTDTEVGKEPTPSFVPPA RAEAAVKSVTHNAPAPASLQTEEKAP A APV K AP TS+QPSVIGRFMRGFAKLLGSD++ AE TP P V APRK SER GDSN R E + XXXXXXXXXXX GPSR N QE + GK A +KEPRRD+ E +QR EA K DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ E Q EA + +P TA+Q V +A PNA+ XXX + DATT D+P A N KA KSTHQRRQPKA PEA ETA
Sbjct: 391 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSSQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPEMDTPHYDVQRLRDDHLDEDDTQNLSSFELSTDTEVGKEPTPSFVPPAMRAEAAVKSVTHNAPAPASLQTEEKAPDAAPAPVAKAAPATSEQPSVIGRFMRGFAKLLGSDESSAEATPEPKVETPAPRKPSERXXXXXXXXX---XXXXXXGDSNARTEQKG-------XXXXXXXXXXXSSTARPASDDNSDKRNGPSRTRNRRRHPQQDDANGQEPXXXXXXXXXXXXXXXXXXXXXXXXXXSNNGKNAAKKEPRRDSGGEKSSDSQRDEAAKNSEXXXXXXXXDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQAEVQDEAPAATQEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAGETAQQEVAAADAPEPNAKSEXXXXXXXXXXD--DATTADQPVAENAKASKSTHQRRQPKAAPEAAQETA 897
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A365TTV2_9GAMM (Ribonuclease E n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TTV2_9GAMM) HSP 1 Score: 406 bits (1043), Expect = 1.370e-126 Identity = 297/477 (62.26%), Postives = 334/477 (70.02%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESR------QRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNESAGK---GAPQKEPRRDAARENQRAEATK--QPMDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAIGAETVERMPESPINTAKQPVEATAPNAEDPAAEAXXXERDEQAD-ATTXDRPAAVNDKARKSTHQRRQPKATPEAHAETA 1395
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA S +QPSVIGRF+RGFAKLLGSD++ AEP P+P + SR+ R D++ ++E +++ + XXXXXXXXXXXXXXXXXXXXXXXX ++ + +KD+ G A QKEPRRD++R+NQR EA + DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ EA +EA ++V +E +A+ A PN+ D + + E E+AD ATT DRP A N KA KSTHQRRQPK P+A ETA
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAASSXXXXXXXXXXXEQPSVIGRFIRGFAKLLGSDESSAEPAPAPKAXXXXXXXXXXXXXXXXXXXXXXXXXXGETTSRNARSDNSPQSEQKTEQKSDQRNTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTNGQEPANKVPRKETQTDSTAKDNAGXXXXXXXXXXXNAAQKEPRRDSSRDNQRNEAVNNTEAKDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQAEAPSEAPEAVTQPSEM----------SAEAASNANVPNSADITSPS---ETSEKADNATTADRPVADNAKASKSTHQRRQPKVAPDAAPETA 857
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A7U9GFZ8_9GAMM (Ribonuclease E n=2 Tax=Halomonas boliviensis TaxID=223527 RepID=A0A7U9GFZ8_9GAMM) HSP 1 Score: 406 bits (1043), Expect = 1.400e-126 Identity = 298/509 (58.55%), Postives = 315/509 (61.89%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVN--------------ESAGKGAPQKEPRRDAARE----NQRAEATKQP--------MDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVA------------------IGAETVERMPESPINTAKQPVEATAPNAEDPAAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKATPEAHAETA 1395
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENS+QIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNP+MDTPHYDVQRLRDDHLDEDDTQ+LSSFELSTDTEVGKEPTPSFVPPA RAEAAVKSVTHNAPAPASLQTEEKAP A APV K AP TS+QPSVIGRFMRGFAKLLGSD++ AE TP P V APRK SER GDSN R E + XXXXXXXXXXX GPSR N QE + GK A +KEPRRD+ E +QR EA K DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ E Q EA + +TA A AP + XXX ATT D+P A N KA KSTHQRRQPKA PEA ETA
Sbjct: 391 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSSQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPEMDTPHYDVQRLRDDHLDEDDTQNLSSFELSTDTEVGKEPTPSFVPPAMRAEAAVKSVTHNAPAPASLQTEEKAPDAAPAPVAKAAPATSEQPSVIGRFMRGFAKLLGSDESSAEATPEPKVETPAPRKPSERXXXXXXXXX---XXXXXXGDSNARTEQKG-------XXXXXXXXXXXSSTARPASDDNSDKRNGPSRTRNRRRHPQQDDANGQEPXXXXXXXXXXXXXXXXXXXXXXXXXXSNNGKNAAKKEPRRDSGGEKSSDSQRDEAAKNSEXXXXXXXXDDGKPKRTRNNPRNRTRTQAINPQAEAEQLKLQAEVQDEAPAATQEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTAAPAPPADAPEPNAKSXXXXXXXXXXXXXATTADQPVAENAKASKSTHQRRQPKAAPEAAQETA 889
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: A0A4R7YPA7_9GAMM (Ribonuclease E n=3 Tax=Halomonas TaxID=2745 RepID=A0A4R7YPA7_9GAMM) HSP 1 Score: 406 bits (1044), Expect = 2.300e-126 Identity = 302/516 (58.53%), Postives = 326/516 (63.18%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GPSRXXXXXXXXXXXXNNAQESINVSKDSN---------------------GNVNESAGKGAPQKEPRRDAA---RENQRAEATKQP--------MDDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALK-------------------------SVAIGAETVERMPESPINTAKQPVEATAPNAEDPAAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKA 1368
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA AP K APVTS+QPSVIGRF+RGFAKLLGSD++ AE TP P V APRK SE ESRQ+ SR ERGD+ RNE XXXXXXXXXXXXXXXXX GPSR N QES + N G+ ++G+ A QKE RRD R++QR E K DDGKPKRTRNNPRNRTR QA+NP ++A+G+++ + QP EA A +A +P AE + DATT DRP A N KARKSTHQRRQPKA
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA--APAVKAAPVTSEQPSVIGRFIRGFAKLLGSDESSAEATPEPKVETPAPRKPSEXXXXXXXGESRQKSSRGERGDNASRNEXXXXXXXXXXXXXXXXXXXXXXXXXXTPRPASDDSSDKRSGPSRTRNRRRHPQQDDANGQESAKAPRKENHADSSSSSXXXXXXXXXXXXEGSKESTSGRSAAQKESRRDGGDKNRDSQRDETAKSSEPKNVETKQDDGKPKRTRNNPRNRTRXQAINPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNDTTIALGSDS---------DVTAQP-EAAAADAPEPNAE-------QADDATTADRPVAENAKARKSTHQRRQPKA 890
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: UPI001F10E8A6 (ribonuclease E n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F10E8A6) HSP 1 Score: 402 bits (1033), Expect = 3.810e-125 Identity = 317/519 (61.08%), Postives = 341/519 (65.70%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------GPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNESAGKGAPQKEPRRDA-ARENQRAEA-------------------TKQPM---DDGKPKRTRNNPRNRTRAQAVNPKAEAEQLKLQEEAQTEALKSVAI--------GAETVERMPESPINTAKQ---PVEATAPNAEDPAAEAXXXERDEQAD-ATTXDRPAAVNDKARKSTHQRRQPKATPEAHAETAQEDTITLE 1419
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAA S+QPSV+GRFMRGFAKLLGSD++ AE P P V APRK SE ERGD+ G XXXXXXXXXXXXXXXXXXXXXXXXXXXX GPSR N QE+ N AP+KE + D+ A+E +++ KQP DDGKPKRTRNNPRNRTR QA+NP+AEAEQLKLQ EA EA A+ AE ++ + + AK P + T P AE ++ E EQAD ATT DRPAA N KARKSTHQRRQPKA P A AE + T T E
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAASXXXXXXXXXXXSEQPSVLGRFMRGFAKLLGSDESSAETAPEPKVETPAPRKPSEXXXXXXXXXXXXXXXXGERGDNTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGPSRTRNRRRHPQQDDANGQETANK---------------APRKEAQADSSAKEGNNSKSXXXXXXXXXXXXXXXXXXSAKQPEAAPDDGKPKRTRNNPRNRTRTQALNPQAEAEQLKLQAEAPVEAPAEPAVETPEAQAPAAEALKSEVPATADAAKTDTGPADVTQPEAEAHSS----AETSEQADNATTADRPAAENAKARKSTHQRRQPKAAPVA-AEAQEPTTDTGE 892
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Match: UPI001CF25E2E (ribonuclease E n=2 Tax=Halomonas TaxID=2745 RepID=UPI001CF25E2E) HSP 1 Score: 397 bits (1020), Expect = 2.950e-123 Identity = 295/536 (55.04%), Postives = 325/536 (60.63%), Query Frame = 1
Query: 1 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQGVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPTPSFVPPAQRAEAAVKSVTHNAPAPASLQTEEKAPAAPSAPVTKVAPVTSDQPSVIGRFMRGFAKLLGSDDAPAEPTPSPNVAPLAPRKQSERKPHQRSNESRQRPSRSERGDSNGRNESRSDTSNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPSRXXXXXXXXXXXXNNAQESINVSKDSNGNVNESAGKGAPQKEPRRDAARENQ--------------------------------RAEATKQPMDDGKPKRTRNNPRNRTRAQA-----------------------------VNPKAEAEQLKLQEEAQTEALKSVAIGAETVERMPESPINTAKQPVEATAPNAEDPAAEAXXXERDEQADATTXDRPAAVNDKARKSTHQRRQPKA-TPEAHAETA----QEDTI 1410
GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQ VRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEP PSF+PPAQRAEAAVKSVTHNAPAPASLQTEEKAP A APV K APV S+QPSVIGRF+RGFAKLLGSD++ AE P P V PRKQSER+P QRSNESRQRPS RGDSN R E +++ S XXXXXXX GPSR N QE+ N AP+KE + D++ + DDGKPKRTRNNPRNRT N A EQ+ +A T+ +A+G++ NTA+ EA A +A +P AE + DATT D+PAAVN KARKSTHQRRQPKA +P TA Q+D+I
Sbjct: 394 GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPVATYLLNEKRSVLADLESRQNVRVVLLPNPDMDTPHYDVQRLRDDHLDEDDTQSLSSFELSTDTEVGKEPAPSFMPPAQRAEAAVKSVTHNAPAPASLQTEEKAPVA--APVAKAAPVASEQPSVIGRFIRGFAKLLGSDESSAETNPEPKVETPTPRKQSERRPSQRSNESRQRPS---RGDSNARPEPKAEQS-------AXXXXXXXSSAPRPASDDNGDKRSGPSRTRNRRRHPQQEDANGQETANK---------------APRKETKADSSSKESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDDGKPKRTRNNPRNRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAPAAEEQVG---KAATDDA-PIALGSDAG--------NTAE--TEAAAADAPEPNAE-------QAEDATTADQPAAVNAKARKSTHQRRQPKAASPAEQTSTASTVEQDDSI 881 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12062.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12062.1322.1 >prot_E-siliculosus-1a_F_contig12062.1322.1 ID=prot_E-siliculosus-1a_F_contig12062.1322.1|Name=mRNA_E-siliculosus-1a_F_contig12062.1322.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=532bp GETSGVVCPRCNGQGTIRDVRSLSLSIMRLIEEEAMKENSAQIRAILPVPback to top mRNA from alignment at E-siliculosus-1a_F_contig12062:121..1716- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12062.1322.1 ID=mRNA_E-siliculosus-1a_F_contig12062.1322.1|Name=mRNA_E-siliculosus-1a_F_contig12062.1322.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12062:121..1716- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12062:121..1716- >mRNA_E-siliculosus-1a_F_contig12062.1322.1 ID=mRNA_E-siliculosus-1a_F_contig12062.1322.1|Name=mRNA_E-siliculosus-1a_F_contig12062.1322.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3192bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12062:121..1716- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |