mRNA_E-siliculosus-1a_F_contig1206.1321.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 509 bits (1310), Expect = 4.380e-172 Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 3
Query: 54 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESED 806
MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESED
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESED 251
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 480 bits (1236), Expect = 3.060e-161 Identity = 239/275 (86.91%), Postives = 249/275 (90.55%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESEDADDDESSMSYRF 842
M RT FVALACGMLG ASALEVVTPA GD+VV+SRAYTVEW+GTGSN R+EIDLYYC SMCMEDECG+WVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDD+DS DCSDEFYLMAHA+APSA DAGGPYVTVTSPS+GDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLY+ATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFED+SVYGCSDEFEILGADD SSMSYRF
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD------------------SSMSYRF 258
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 384 bits (987), Expect = 6.560e-124 Identity = 196/275 (71.27%), Postives = 219/275 (79.64%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESEDADDDESSMSYRF 842
M RT FVALACGMLGAA+AL+V TP++G V+A R YTVEWTGT S+NR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ D++ DCSDEFYL+A +EAPS GD GP + VTSP+SGD A EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP D +AG Y IRV FEDDS+Y CS F I DDS D EDA S+SYRF
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS----DXXXXXEDA----FSLSYRF 267
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 380 bits (975), Expect = 2.690e-122 Identity = 188/250 (75.20%), Postives = 208/250 (83.20%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 767
MART FVALAC MLGAA+ALEVVTP+ IVVA R YTVEWTG S R+EIDLY+CGSMCMED CGDWVTALCPYGE+GCPDNEGDYDIVMPEPMSG S SGYKVRV DV D+DS DCSD FYLMA +AP AG G ++TVTSP+ GDSAEAGEEYTVEFDYDNG+GS V RF+IDLY A G GDCGT++ ++CDKP+IGCKDSMGDYDVEIP D EAG Y IRVG FED+ +YGCS F I+G DD
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDD 249
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 362 bits (929), Expect = 1.540e-115 Identity = 183/247 (74.09%), Postives = 204/247 (82.59%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILG 758
MARTAF ALA GMLGAA+ALEVV+PA GD+VVA AYTVEWTG S RY+IDLYYCGS+CMEDECGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D D+ CS +F L+A EAP A D G YV+VTSPS GD+A AG EYTVEFDYDNGLGSSV RFAIDLYS+ GSGDCGT++ T+CDKP+IGCKDS GDYDV IP E+GMY+IRVG FEDD VYGCSD FEI+G
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVG 244
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 337 bits (863), Expect = 9.170e-106 Identity = 173/247 (70.04%), Postives = 202/247 (81.78%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYS-ATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 755
MARTAF ALA GMLGAA+ALEVV+PA G V+A R YTVEWTGT S++R+EIDLYYCGS CMEDECGDWVTALCPYG DGCPD +GDYDIVMPEPM+GTS SGYKV V D +D+ S CS +F L+A +AP+AG+ G +TVTSPS GD+A AG YTVE+DY+NGLGSS RFAIDLYS TG+GDCGT++ TLCDKP+IGC DS GDYDVEIP D AGMY++RVG F DD ++ CS+ FEI+
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGT-SDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYS-LTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 332 bits (850), Expect = 5.130e-104 Identity = 159/207 (76.81%), Postives = 179/207 (86.47%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDS 638
MART FVALACGMLGAA+AL+V TP++G V+A R YTVEWTGT S+NR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRV D+ D++ DCSDEFYL+A +EAPS GD GP + VTSP+SGD A EYTVEFDYDNG+GS V RFAIDLY A G GDCGT++ ++CDKPTIGCKDS
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 324 bits (830), Expect = 6.530e-101 Identity = 165/250 (66.00%), Postives = 197/250 (78.80%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 767
MARTAF A+A GML AA+ALEVV+P G V+A RAYTVEWTGT + R+EIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPMSGTS SGYKV V + +D+ CSD+F L+A +AP AG+ G +TVTSPS GD+A AGE YTVE+DY+NG GSS RFA+DLY G+GDCGT++ TLCD+P+IGC DS GDYDVEIP D AGMY+IRVG F+D+ +Y CSD FE+ +DD
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYS-LTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDD 247
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 291 bits (744), Expect = 2.350e-88 Identity = 157/275 (57.09%), Postives = 184/275 (66.91%), Query Frame = 3
Query: 18 MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGDLDMESEDADDDESSMSYRF 842
MARTAF ALA GMLGA +ALEV +PA GD++VA+ + TVEWTGT S+ R++IDLYYCGS+CMEDECGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D D+ CS EF L+A A FD+DNG GSSV RF+IDLY + GSGDCGT++ ++CDK +IGCKDS GDYDV IP D E+GMY+IRVG FED V+GCSD FEI+G ESSMS RF
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGT-SSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGG-------------------ESSMSVRF 253
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 293 bits (749), Expect = 8.330e-86 Identity = 141/187 (75.40%), Postives = 156/187 (83.42%), Query Frame = 3
Query: 201 MEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 761
+EDECG+WVTALCPYG +GCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVD DCSDEFYLMA AEAP G PY+ VTSPS+GD A+AG EYTVEFDYDNG+GS V RF IDLYS G+GDCGT++ LCDK IGCKDSMGDYDVEIPE GMY+IRVG FEDD++YGCS EFEI+G+
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGS 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1206.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1206.1321.1 >prot_E-siliculosus-1a_F_contig1206.1321.1 ID=prot_E-siliculosus-1a_F_contig1206.1321.1|Name=mRNA_E-siliculosus-1a_F_contig1206.1321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=276bp MARTAFVALACGMLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYback to top mRNA from alignment at E-siliculosus-1a_F_contig1206:17132..24778- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1206.1321.1 ID=mRNA_E-siliculosus-1a_F_contig1206.1321.1|Name=mRNA_E-siliculosus-1a_F_contig1206.1321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7647bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1206:17132..24778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1206:17132..24778- >mRNA_E-siliculosus-1a_F_contig1206.1321.1 ID=mRNA_E-siliculosus-1a_F_contig1206.1321.1|Name=mRNA_E-siliculosus-1a_F_contig1206.1321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1656bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1206:17132..24778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |