mRNA_E-siliculosus-1a_F_contig12043.1312.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12043.1312.1
Unique NamemRNA_E-siliculosus-1a_F_contig12043.1312.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12043.1312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12043contigE-siliculosus-1a_F_contig12043:633..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size321
Model size624
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12043.1312.1prot_E-siliculosus-1a_F_contig12043.1312.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12043 644..964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.3486857-UTR-E-siliculosus-1a_F_contig12043:632..6431622927726.3486857-UTR-E-siliculosus-1a_F_contig12043:632..643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12043 633..643 +
1696318655.7574115-UTR-E-siliculosus-1a_F_contig12043:632..6431696318655.7574115-UTR-E-siliculosus-1a_F_contig12043:632..643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12043 633..643 +
1622927726.3856156-UTR-E-siliculosus-1a_F_contig12043:964..12561622927726.3856156-UTR-E-siliculosus-1a_F_contig12043:964..1256Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12043 965..1256 +
1696318655.7763636-UTR-E-siliculosus-1a_F_contig12043:964..12561696318655.7763636-UTR-E-siliculosus-1a_F_contig12043:964..1256Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12043 965..1256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.3669128-CDS-E-siliculosus-1a_F_contig12043:643..9641622927726.3669128-CDS-E-siliculosus-1a_F_contig12043:643..964Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12043 644..964 +
1696318655.7665064-CDS-E-siliculosus-1a_F_contig12043:643..9641696318655.7665064-CDS-E-siliculosus-1a_F_contig12043:643..964Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12043 644..964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12043.1312.1

>prot_E-siliculosus-1a_F_contig12043.1312.1 ID=prot_E-siliculosus-1a_F_contig12043.1312.1|Name=mRNA_E-siliculosus-1a_F_contig12043.1312.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp
MVVYFFVRRCFFFQSLIRREGNNRDQLLAVVMLCCLRIQRGPGQKCRGDY
SYCELTWSGVERPISRFVPCRPFVLWRGSFFFSFIFPRFVFKYIPLCMCC
RICCCC*
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mRNA from alignment at E-siliculosus-1a_F_contig12043:633..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12043.1312.1 ID=mRNA_E-siliculosus-1a_F_contig12043.1312.1|Name=mRNA_E-siliculosus-1a_F_contig12043.1312.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12043:633..1256+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTATTTCACATGGTTGTTTATTTTTTTGTCCGTCGATGCTTTTTTTTT
CAAAGTCTCATCCGAAGGGAGGGGAACAATCGCGATCAACTGCTTGCTGT
GGTCATGTTGTGTTGTCTGCGGATACAACGGGGGCCAGGTCAGAAGTGTC
GGGGAGACTATTCTTATTGCGAGCTGACTTGGTCAGGAGTGGAGCGCCCT
ATTAGCCGCTTCGTGCCATGTCGACCGTTTGTTTTGTGGAGAGGAAGTTT
TTTTTTCAGTTTTATTTTTCCGCGCTTTGTGTTCAAGTACATACCTCTCT
GCATGTGTTGTAGGATATGCTGCTGCTGCTAGCGGACTTCGTCTGCAGCC
CTTGCTGCATAGCACTGCGTGCGCACCTTTGTTCCGTCTTTTGTTTTTTC
GCTTCGCTTTGCATAGTTTGCACATGACGTCGAACGACAATGCCATTGGG
TGTATCACCGATGCGTCTGTCTTCAGTTAGGGAGACCTACTGTAGTTGTT
GCGAGTTGACGGGGACGGTGTTGGAGCGCTCTTGTGGCCGCTGGATCGAC
TGATATTCGGGTGGGGATACCTCTTTTTTTTGTCGCTTCTTTGGAAGTAC
TCTGCATGTCTGTGTCTGATCTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12043:633..1256+

>mRNA_E-siliculosus-1a_F_contig12043.1312.1 ID=mRNA_E-siliculosus-1a_F_contig12043.1312.1|Name=mRNA_E-siliculosus-1a_F_contig12043.1312.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12043:633..1256+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTGTTTATTTTTTTGTCCGTCGATGCTTTTTTTTTCAAAGTCTCAT
CCGAAGGGAGGGGAACAATCGCGATCAACTGCTTGCTGTGGTCATGTTGT
GTTGTCTGCGGATACAACGGGGGCCAGGTCAGAAGTGTCGGGGAGACTAT
TCTTATTGCGAGCTGACTTGGTCAGGAGTGGAGCGCCCTATTAGCCGCTT
CGTGCCATGTCGACCGTTTGTTTTGTGGAGAGGAAGTTTTTTTTTCAGTT
TTATTTTTCCGCGCTTTGTGTTCAAGTACATACCTCTCTGCATGTGTTGT
AGGATATGCTGCTGCTGCTAGATGGTTGTTTATTTTTTTGTCCGTCGATG
CTTTTTTTTTCAAAGTCTCATCCGAAGGGAGGGGAACAATCGCGATCAAC
TGCTTGCTGTGGTCATGTTGTGTTGTCTGCGGATACAACGGGGGCCAGGT
CAGAAGTGTCGGGGAGACTATTCTTATTGCGAGCTGACTTGGTCAGGAGT
GGAGCGCCCTATTAGCCGCTTCGTGCCATGTCGACCGTTTGTTTTGTGGA
GAGGAAGTTTTTTTTTCAGTTTTATTTTTCCGCGCTTTGTGTTCAAGTAC
ATACCTCTCTGCATGTGTTGTAGGATATGCTGCTGCTGCTAG
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