mRNA_E-siliculosus-1a_F_contig1201.1288.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1201.1288.1
Unique NamemRNA_E-siliculosus-1a_F_contig1201.1288.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: D7FRP1_ECTSI (PAP2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP1_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 1.000e-166
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 1
Query:   16 VTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGWRASLNGGAGSGNTAAAVKAAYDPRTEKKNAPWIV 714
            VTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGWRASLNGGAGSGNTAAAVKAAYDPRTEKKNAPW+V
Sbjct:  167 VTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGWRASLNGGAGSGNTAAAVKAAYDPRTEKKNAPWVV 399          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.640e-74
Identity = 113/197 (57.36%), Postives = 148/197 (75.13%), Query Frame = 1
Query:   25 NFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRG--HATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENG 609
            NF+T VH P  PLFD+GF ++P Q +DSPWRP+SD LT  LPG+A LR+LF DR+ R   +  WFRL+S+ Y++RCL + LTSLPGPAPHC   + Y+PP  WH++ATR+G ++GDF +CGDLLFSGH A+TT++ML+  KS+R      Y   KA G +YLLTM T  IAGRKHYTVD+ L +++A LTFFRF++G
Sbjct:  339 NFSTMVHQPRLPLFDVGFYLVPAQGVDSPWRPLSDILTLALPGLAFLRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSEYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDG 535          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 4.640e-67
Identity = 96/172 (55.81%), Postives = 128/172 (74.42%), Query Frame = 1
Query:   94 QTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRG--HATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFE 603
            Q +DSPWRP+SD LT  LPG+A  R+LF DR+ R   +  WFRL+S+ Y++RCL + LTSLPGPAPHC   + Y+ P  WH++ATR+G ++GDF +CGDLLFSGH A+TT++ML+  KS+R      Y + K+ G +YLLTM T  IAGRKHYTVD+ L +++A LTFFRF+
Sbjct:   30 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSGYDRPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYALVKSTGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ 201          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: K3X811_GLOUD (PAP2_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X811_GLOUD)

HSP 1 Score: 219 bits (557), Expect = 1.310e-65
Identity = 99/200 (49.50%), Postives = 149/200 (74.50%), Query Frame = 1
Query:   25 NFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRD-KALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRGHATY--RVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            N A Y+H P++ PL D+GF+++P Q +DSPWRPVSD LTA++P +A++++ FM R  R  +++++FR+ ++ Y LR LT+ LTSLPGPAPHCR    LY PP +W +I TR+G M G+F+SCGDL+FSGH A+T   +L+++++   H     ++   LG V+LLT+ TL ++GRKHY+VD+ LGI++++L FF FE+GW
Sbjct:  180 NIAFYLHAPSDTPLRDLGFMLVPAQAVDSPWRPVSDVLTAVMPVVAMVQTYFMTRANRCRVISTFFRVATVSYALRMLTVSLTSLPGPAPHCRPGSGLYFPPQTWIDIVTRVGPMYGNFNSCGDLIFSGHMAYTNSALLLYLRTMDQHFVRFSKLRWTLGAVFLLTLATLCVSGRKHYSVDVMLGIMISTLVFFHFEHGW 379          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A5D6XG27_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG27_9STRA)

HSP 1 Score: 215 bits (547), Expect = 2.290e-64
Identity = 108/202 (53.47%), Postives = 145/202 (71.78%), Query Frame = 1
Query:   22 VNFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCR-DKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRGHA---TYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            VN A Y+H P+  PL D+GFL IPEQ +DS WRP+SD LTA +P + LL+SL M R+ RVT+++++FR  ++ Y LR LTI LTSLPGPAPHCR   A Y PP +W +I TR+G M G+++SCGDL+FSGH A+T   +L++++    HA   +   W ALG  YLL +  L IAGRKHYTVD+ LG+L+++L FF FE+ W
Sbjct:  129 VNVAFYLHVPSSTPLPDLGFLFIPEQAVDSKWRPLSDVLTAGVPVVFLLQSLAMTRENRVTVISTFFRCATVCYFLRGLTIALTSLPGPAPHCRVGSATYFPPQNWIDIVTRVGPMYGNYNSCGDLIFSGHMAYTNSAVLLYLRVLDRHAPRFSALRW-ALGAAYLLLLAALCIAGRKHYTVDVVLGLLISALVFFHFEHSW 329          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A662Y930_9STRA (PAP2_C domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y930_9STRA)

HSP 1 Score: 214 bits (544), Expect = 6.100e-64
Identity = 101/203 (49.75%), Postives = 146/203 (71.92%), Query Frame = 1
Query:   22 VNFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKAL-YNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKS----WRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            VN A Y+H P   PL D+GF++IPEQ +DS WRPVSD LTA +P I +L++LFM R  R  +++S+FRL ++ Y LR LT+ +TSLPGPAPHCR  +  Y PP +W +I TR+G + G+++SCGDL+FSGH A+T   +L+++++    + GH   ++  A G+ YL+ +  L IAGRKHYTVD+ LG+++A+L FF FE+ W
Sbjct:  153 VNIAFYLHVPTTTPLKDLGFMLIPEQAIDSKWRPVSDLLTAGVPVIFMLQTLFMTRANRCRIISSFFRLATVCYFLRMLTVSVTSLPGPAPHCRAGSPDYYPPTTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFPGHTASKIRWACGMSYLVVLSVLCIAGRKHYTVDVVLGLMIATLVFFHFEHSW 355          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A5D6Y3E4_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3E4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.890e-63
Identity = 103/200 (51.50%), Postives = 143/200 (71.50%), Query Frame = 1
Query:   25 NFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRD-KALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSW-RGHATY-RVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            N A Y+H PA  PL D+GF+++PEQ LDS WRP+SD LTA++P + LL++LFM R  R  ++ ++FR+ S+ Y LR LT+ LTSLPGPAPHCR   ALY PP +W +I TR+G M G F+SCGDL+FSGH A+T   +L+++++  R  A + R+    G  +LL +  L +AGRKHYTVD+ LG++V+SL +F FE  W
Sbjct:  143 NIAFYLHAPAAAPLRDLGFMLVPEQALDSKWRPLSDVLTAVVPVLGLLQTLFMTRANRCRVIATFFRVASVSYALRLLTVSLTSLPGPAPHCRPGSALYAPPQTWIDIVTRVGPMYGQFNSCGDLIFSGHMAYTNSALLLYLRTMDRYFARFSRLRWLAGTAFLLALALLCVAGRKHYTVDVVLGVVVSSLVYFHFEYSW 342          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A484EEP4_BRELC (PAP2_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EEP4_BRELC)

HSP 1 Score: 211 bits (538), Expect = 4.020e-63
Identity = 102/204 (50.00%), Postives = 147/204 (72.06%), Query Frame = 1
Query:   22 VNFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKAL-YNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKS----WRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGWR 615
            VN + ++H PA  PL D+GF++IPEQTL S WRPVSD LTA LP I LL+++ M R  R  +V+S+FR+ +I Y LR LT+ +TSLPGPAPHCR   L Y PP +W +I TR+G + G+++SCGDL+FSGH A+T   +L+++++    + G  + ++  A GV YL+ +  L IAGRKHYTVD+ LG++++++ FF FE+ WR
Sbjct:  147 VNISFFLHVPAATPLKDLGFMLIPEQTLHSKWRPVSDILTAGLPVIFLLQTIVMSRPSRCRIVSSFFRIATICYFLRMLTVSVTSLPGPAPHCRAGNLDYFPPATWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFSGSMSSKIRWACGVAYLIILAVLCIAGRKHYTVDVVLGVIISTMVFFLFEHSWR 350          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A0P1APX3_PLAHL (Transmembrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APX3_PLAHL)

HSP 1 Score: 209 bits (532), Expect = 9.010e-63
Identity = 103/203 (50.74%), Postives = 145/203 (71.43%), Query Frame = 1
Query:   22 VNFATYVHTPAE-PLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKAL-YNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKS----WRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            VN + Y+H PA  PL D+GF++IPEQ L S WRPVSD LTA +P I LL++  M R  R  +V+S+FR+V+I Y LR LT+ +TSLPGPAPHCR  +  Y PP SW +IATR+G + G+++SCGDL+FSGH A+T   +L+++++    + G    ++  A G+ YL+ +  L IAGRKHYTVD+ LG++V++L FF FE+ W
Sbjct:   99 VNISFYLHVPATTPLKDLGFMIIPEQKLHSKWRPVSDILTAGMPVIFLLQTAVMTRPNRCRVVSSFFRIVTICYFLRMLTVSVTSLPGPAPHCRVGSHDYFPPTSWIDIATRVGPIYGNYNSCGDLIFSGHMAYTVSAVLLYLRTLDRNFPGRMASKIRWACGLTYLIILAVLCIAGRKHYTVDVVLGLIVSTLVFFHFEHSW 301          
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Match: A0A3M6VWW8_9STRA (PAP2_C domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VWW8_9STRA)

HSP 1 Score: 206 bits (525), Expect = 3.600e-61
Identity = 100/203 (49.26%), Postives = 144/203 (70.94%), Query Frame = 1
Query:   22 VNFATYVHTPA-EPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKAL-YNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKS----WRGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENGW 612
            VN A Y+H P   PL D+GF++IPEQ L S WRPVSD LTA +P + LL++  M R  R  +V+S+FR+ +I Y LR LT+ +TSLPGPAPHCR  +  Y+PP SW +I TR+G + G+++SCGDL+FSGH A+T L +L+++++    +  H   ++  A G+ YL+ +  L IAGRKHYTVD+ LG+L++++ FF FE+ W
Sbjct:  152 VNIAFYLHEPTITPLKDLGFMLIPEQGLHSKWRPVSDILTAGVPVMFLLQTFAMTRPNRCRIVSSFFRVATICYFLRMLTVSVTSLPGPAPHCRAGSPDYDPPTSWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNLAVLLYLRTLDRNFTNHTISKMRWACGMAYLVILAVLCIAGRKHYTVDVVLGLLISTMVFFHFEHSW 354          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1201.1288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP1_ECTSI1.000e-16699.57PAP2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5J947_9PHAE1.640e-7457.36PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LG44_ECTSI4.640e-6755.81PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
K3X811_GLOUD1.310e-6549.50PAP2_C domain-containing protein n=1 Tax=Globispor... [more]
A0A5D6XG27_9STRA2.290e-6453.47PAP2_C domain-containing protein n=1 Tax=Pythium b... [more]
A0A662Y930_9STRA6.100e-6449.75PAP2_C domain-containing protein n=2 Tax=Nothophyt... [more]
A0A5D6Y3E4_9STRA1.890e-6351.50PAP2_C domain-containing protein n=1 Tax=Pythium b... [more]
A0A484EEP4_BRELC4.020e-6350.00PAP2_C domain-containing protein n=1 Tax=Bremia la... [more]
A0A0P1APX3_PLAHL9.010e-6350.74Transmembrane protein n=1 Tax=Plasmopara halstedii... [more]
A0A3M6VWW8_9STRA3.600e-6149.26PAP2_C domain-containing protein n=1 Tax=Peronospo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1201contigE-siliculosus-1a_F_contig1201:126..1778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size714
Model size717
Exons3
Ec32 orthologEc-00_003290.1
Ec32 ortholog descriptionSphingomyelin synthase-like domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3058@1,KOG3058@2759
EggNOG free text desc.sphingomyelin synthase activity
Seed eggNOG ortholog2880.D7FRP1
Seed ortholog evalue4.3e-132
Seed ortholog score477.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1201.1288.1prot_E-siliculosus-1a_F_contig1201.1288.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1201 129..1778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.2515972-UTR-E-siliculosus-1a_F_contig1201:125..1281622927723.2515972-UTR-E-siliculosus-1a_F_contig1201:125..128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1201 126..128 +
1696318654.1895542-UTR-E-siliculosus-1a_F_contig1201:125..1281696318654.1895542-UTR-E-siliculosus-1a_F_contig1201:125..128Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1201 126..128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.2637095-CDS-E-siliculosus-1a_F_contig1201:128..4871622927723.2637095-CDS-E-siliculosus-1a_F_contig1201:128..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 129..487 +
1696318654.2077124-CDS-E-siliculosus-1a_F_contig1201:128..4871696318654.2077124-CDS-E-siliculosus-1a_F_contig1201:128..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 129..487 +
1622927723.274606-CDS-E-siliculosus-1a_F_contig1201:970..11571622927723.274606-CDS-E-siliculosus-1a_F_contig1201:970..1157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 971..1157 +
1696318654.22441-CDS-E-siliculosus-1a_F_contig1201:970..11571696318654.22441-CDS-E-siliculosus-1a_F_contig1201:970..1157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 971..1157 +
1622927723.2891796-CDS-E-siliculosus-1a_F_contig1201:1610..17781622927723.2891796-CDS-E-siliculosus-1a_F_contig1201:1610..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 1611..1778 +
1696318654.2319193-CDS-E-siliculosus-1a_F_contig1201:1610..17781696318654.2319193-CDS-E-siliculosus-1a_F_contig1201:1610..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1201 1611..1778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1201.1288.1

>prot_E-siliculosus-1a_F_contig1201.1288.1 ID=prot_E-siliculosus-1a_F_contig1201.1288.1|Name=mRNA_E-siliculosus-1a_F_contig1201.1288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=238bp
MTTAVTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPG
IALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRD
KALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSW
RGHATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFE
NGWRASLNGGAGSGNTAAAVKAAYDPRTEKKNAPWIV*
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mRNA from alignment at E-siliculosus-1a_F_contig1201:126..1778+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1201.1288.1 ID=mRNA_E-siliculosus-1a_F_contig1201.1288.1|Name=mRNA_E-siliculosus-1a_F_contig1201.1288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1653bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1201:126..1778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACAATGACAACCGCAGTGACGGTGAACTTCGCTACCTACGTGCACACCCC GGCGGAGCCGCTGTTCGACATCGGCTTCCTGGTCATCCCGGAGCAGACTC TCGACTCCCCCTGGAGGCCGGTGAGCGACACTCTCACGGCGCTCCTCCCG GGCATCGCGCTCCTCCGCAGCCTCTTCATGGACCGCAAGCAGCGCGTCAC CCTGGTCACGTCCTGGTTCCGGCTCGTGTCGATCGTCTACATGCTGCGCT GCCTGACGATCGGGTTGACGTCGCTGCCGGGGCCGGCGCCCCACTGCAGG GACAAGGCCCTTTACAACCCGCCCGTCAGCTGGCACGAGATCGCGACGCG CATGGGCGTCATGTGAGTGTTTTCCGTCGGGGGTGTGTGTTCGTGGGGAG TGATTGTTAGTGCCCCTGGTGCGTGCGTGTGTTTGTTGTGCATGTCTGCC ACCGCCCCGACTAGCTGCTGCTACTGTAGGCCGCCTGAACAGGCGACAGG CAGTAGGATAGAAGTATACCAAACTGTGGCGCGTCGCTGTTCAAGAGCTT TGTTAGTGGCTTCCGTCAGCTTTAGCACGTACATATTGTTGTTGCCAGAG TGTCTTCGTTTTTTCTTTCGAAGTTGCCGGCCTAGGTTCCAACCCAACGG AACGTGCCGACTGCTGTCTTCTGACACTTAACAAGGAAGGTGCTATGCGA ACAATACACTTTTATGAACCTACACGTCCCCTTCCGTCCATTTCAACATG ATACCCACCACTCGTACGCCTACTTTGCTGTAGGCGGTAACATTTTTTAT TGTTTTGACGTCGACCGTCGTTTGGCTCTGTTTTTTGGCTGGCAGGGTCG GGGATTTCAGCTCTTGCGGGGACTTGCTCTTTTCCGGGCACGCGGCCTTC ACGACGCTGACGATGCTGATATTTGTCAAGTCTTGGAGGGGGCACGCAAC GTACCGCGTGTGGAAGGCGCTCGGGGTCGTGTACCTGCTGACCATGTGCA CGCTGGCCATCGCGGGGCGGAAACACTATACGGTGAGAGAACATGACAAG ACAAGATTTACAGATTCGAGACAAGAGAAAATATTCTTGTTTCGTACCAT GTGTACGCCGCATTCCGCAAACGATCCGCCTTCGGGGAGAAATAGAGATT ATGAGGAAATAGAACAGCCGTAAGGGGGTACAGTACGCAGACCCTGTCCC CAACCTACCTTAACCCAACTTGGCCGGATGGCATGCTTTGTCCAACATGT TTCCTACTTGTAGTAGTATTAATAGTAGAAGCACCCCGCGAAGGCTGCGT ACTTGCCGCCTTCTTGGGGTCTTGGGCGAGGGCAGGGGCGAGGGTTATCA CGCTCGCGGCTACAAATATGGTATCACGCCAGTGCTCGTCCTCGCTCTCC TCTGTATCCCTGTTCATTGCGACCCCAACCCCTCCCCCACTCCCTCCGCG CGCGGGCCTGTTTGCTGGATGTTTCTCTCCGCAAGGTGGACATCACGCTG GGCATCCTTGTCGCAAGCCTGACGTTCTTCCGATTCGAGAACGGGTGGAG AGCGTCTTTGAATGGGGGTGCGGGCAGCGGGAACACGGCTGCGGCGGTCA AGGCGGCCTACGACCCGCGGACAGAAAAGAAGAATGCCCCGTGGATTGTT TGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1201:126..1778+

>mRNA_E-siliculosus-1a_F_contig1201.1288.1 ID=mRNA_E-siliculosus-1a_F_contig1201.1288.1|Name=mRNA_E-siliculosus-1a_F_contig1201.1288.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1201:126..1778+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAACCGCAGTGACGGTGAACTTCGCTACCTACGTGCACACCCCGGC
GGAGCCGCTGTTCGACATCGGCTTCCTGGTCATCCCGGAGCAGACTCTCG
ACTCCCCCTGGAGGCCGGTGAGCGACACTCTCACGGCGCTCCTCCCGGGC
ATCGCGCTCCTCCGCAGCCTCTTCATGGACCGCAAGCAGCGCGTCACCCT
GGTCACGTCCTGGTTCCGGCTCGTGTCGATCGTCTACATGCTGCGCTGCC
TGACGATCGGGTTGACGTCGCTGCCGGGGCCGGCGCCCCACTGCAGGGAC
AAGGCCCTTTACAACCCGCCCGTCAGCTGGCACGAGATCGCGACGCGCAT
GGGCGTCATATGACAACCGCAGTGACGGTGAACTTCGCTACCTACGTGCA
CACCCCGGCGGAGCCGCTGTTCGACATCGGCTTCCTGGTCATCCCGGAGC
AGACTCTCGACTCCCCCTGGAGGCCGGTGAGCGACACTCTCACGGCGCTC
CTCCCGGGCATCGCGCTCCTCCGCAGCCTCTTCATGGACCGCAAGCAGCG
CGTCACCCTGGTCACGTCCTGGTTCCGGCTCGTGTCGATCGTCTACATGC
TGCGCTGCCTGACGATCGGGTTGACGTCGCTGCCGGGGCCGGCGCCCCAC
TGCAGGGACAAGGCCCTTTACAACCCGCCCGTCAGCTGGCACGAGATCGC
GACGCGCATGGGCGTCATGGTCGGGGATTTCAGCTCTTGCGGGGACTTGC
TCTTTTCCGGGCACGCGGCCTTCACGACGCTGACGATGCTGATATTTGTC
AAGTCTTGGAGGGGGCACGCAACGTACCGCGTGTGGAAGGCGCTCGGGGT
CGTGTACCTGCTGACCATGTGCACGCTGGCCATCGCGGGGCGGAAACACT
ATACGGGTCGGGGATTTCAGCTCTTGCGGGGACTTGCTCTTTTCCGGGCA
CGCGGCCTTCACGACGCTGACGATGCTGATATTTGTCAAGTCTTGGAGGG
GGCACGCAACGTACCGCGTGTGGAAGGCGCTCGGGGTCGTGTACCTGCTG
ACCATGTGCACGCTGGCCATCGCGGGGCGGAAACACTATACGGTGGACAT
CACGCTGGGCATCCTTGTCGCAAGCCTGACGTTCTTCCGATTCGAGAACG
GGTGGAGAGCGTCTTTGAATGGGGGTGCGGGCAGCGGGAACACGGCTGCG
GCGGTCAAGGCGGCCTACGACCCGCGGACAGAAAAGAAGAATGCCCCGTG
GATTGTTTGAGTGGACATCACGCTGGGCATCCTTGTCGCAAGCCTGACGT
TCTTCCGATTCGAGAACGGGTGGAGAGCGTCTTTGAATGGGGGTGCGGGC
AGCGGGAACACGGCTGCGGCGGTCAAGGCGGCCTACGACCCGCGGACAGA
AAAGAAGAATGCCCCGTGGATTGTTTGA
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