mRNA_E-siliculosus-1a_F_contig12.1264.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12.1264.1
Unique NamemRNA_E-siliculosus-1a_F_contig12.1264.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 4.740e-40
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 AEIAKIEGGDTAGDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTRAF 291
            AEIAKIEG D    ARGNRRKA+LQAGLEDLAIGSDDERVQRLYLSLAVLPD Q   VHDAALLL+DRDPTAEDE+SVARVLD+LERWSVLRST A+
Sbjct:  339 AEIAKIEGDDIVDGARGNRRKAILQAGLEDLAIGSDDERVQRLYLSLAVLPDDQGIQVHDAALLLYDRDPTAEDEESVARVLDVLERWSVLRSTWAY 435
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 9.660e-29
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 AEIAKIEGGDTAG---DARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTRAFVEEAEWR 312
            AE+ KIEG   +G   + R  RRKAVLQAG EDLA GSDDERVQRLYLSLAVLPDG+ F V DAA+LL+DR P+AEDE S A V++ILERWSVLRS R     A WR
Sbjct:  438 AEMGKIEGERVSGTVVETRDARRKAVLQAGFEDLASGSDDERVQRLYLSLAVLPDGRGFTVKDAAVLLYDRKPSAEDEASAAGVVEILERWSVLRSIRGCYRMA-WR 543
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.670e-26
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    4 EIAKIEGGDTA---GDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRS 279
            E+ K+  GD +    + R  RRKA+L+AG EDLAIGSDDERVQRLYLSLAV PDG  F V DAA+LL+DR+P AEDE SVA V+D LERW+VLRS
Sbjct:  275 EMGKVGSGDASEKLAETRDARRKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDREPCAEDEASVAVVVDTLERWTVLRS 369
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.850e-26
Identity = 58/83 (69.88%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:   40 DARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTRA 288
            D+R NRR+A+LQAG EDLAIGSDDERVQRLYLSLAVLPDG  F V DAA+LL+DR+P  EDE SV  V++ LERW+++RS  A
Sbjct:  457 DSRVNRRRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDREPGTEDEASVGGVVEALERWTIIRSVEA 539
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.480e-25
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:   40 DARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTRAFVEEAEWR 312
            + R  RRKAV+QAG  DLAIGSDDERVQRLYLSLAVLPDG+RF V DAA+L++DR P+AEDE S A V++ILERWS L S R     A WR
Sbjct:  409 ETRDARRKAVVQAGFGDLAIGSDDERVQRLYLSLAVLPDGRRFTVKDAAVLIYDRMPSAEDEASAAGVVEILERWSALCSIRGCYRMA-WR 498
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.230e-24
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   28 DTAGDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTR 285
            D+A +    RRKA+LQ G EDLAIGSDDERVQRLYLSLAV+PDG  F + DAA+LL+DR P+ EDE S   V+D+LERWS++RS +
Sbjct:  430 DSAENIPAKRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSPSTEDEASAGGVVDVLERWSIIRSAQ 515
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KQ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ93_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.700e-23
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   28 DTAGDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLR 276
            D+A +    RRKA+LQ G ED AI SDDERVQR YLSLAV+PDG  F + DAA+LL DR P+ EDE S   V+D+LERWS++R
Sbjct:   42 DSAENTPAKRRKAILQGGFEDRAIESDDERVQRFYLSLAVMPDGHAFSLKDAAVLLDDRPPSTEDEASAGGVVDVLERWSIIR 124
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.200e-21
Identity = 55/93 (59.14%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:    1 AEIAKIEGGDTAGDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRS 279
            ++I +    D   D R  RRKAVLQAG EDLAIGSDDER+ RLYLSLAVLPDG  F   DA  LL+DR P  EDE S   ++  LERWS LR+
Sbjct:  420 SKIERSRVSDNVWDIRAVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALLYDRAPCPEDEVSTEELIRTLERWSALRT 512
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BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.920e-5
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   55 RRKAVLQAGLEDLAIGSDDERVQRLYLSLAVLPDGQRFLVHDAALLLHDR---DPTAEDEKSVARVLDILERWSVL 273
            +R  +L+AG + L    +    Q+LY+++AV PDG  F V DAA+LL+D    DP     K  +R ++ILERW+VL
Sbjct:  528 KRLGILRAGFDYLG-EEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHMKVASRAIEILERWAVL 602
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5J759_9PHAE4.740e-4084.54NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZY7_ECTSI9.660e-2967.29NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KYW3_9PHAE1.670e-2666.32NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KRK8_9PHAE5.850e-2669.88NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE6.480e-2568.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW8_ECTSI2.230e-2463.95NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KQ93_9PHAE2.700e-2361.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLK9_9PHAE4.200e-2159.14NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KE50_9PHAE1.920e-542.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12contigE-siliculosus-1a_F_contig12:31701..32579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size492
Model size862
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03019,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EggNOG OGsCOG0457@1,KOG1840@2759
EggNOG free text desc.determination of stomach left/right asymmetry
KEGG Pathwayko05132,map05132
KEGG koko:K10407
Seed eggNOG ortholog2880.D7FZY7
Seed ortholog evalue7.6e-27
Seed ortholog score127.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12.1264.1prot_E-siliculosus-1a_F_contig12.1264.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12 31701..32209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927717.4951606-CDS-E-siliculosus-1a_F_contig12:31700..320381622927717.4951606-CDS-E-siliculosus-1a_F_contig12:31700..32038Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12 31701..32038 +
1696318651.9894812-CDS-E-siliculosus-1a_F_contig12:31700..320381696318651.9894812-CDS-E-siliculosus-1a_F_contig12:31700..32038Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12 31701..32038 +
1622927717.5082786-CDS-E-siliculosus-1a_F_contig12:32055..322091622927717.5082786-CDS-E-siliculosus-1a_F_contig12:32055..32209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12 32056..32209 +
1696318652.0005038-CDS-E-siliculosus-1a_F_contig12:32055..322091696318652.0005038-CDS-E-siliculosus-1a_F_contig12:32055..32209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12 32056..32209 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927717.521177-UTR-E-siliculosus-1a_F_contig12:32209..325791622927717.521177-UTR-E-siliculosus-1a_F_contig12:32209..32579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12 32210..32579 +
1696318652.0099368-UTR-E-siliculosus-1a_F_contig12:32209..325791696318652.0099368-UTR-E-siliculosus-1a_F_contig12:32209..32579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12 32210..32579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12.1264.1

>prot_E-siliculosus-1a_F_contig12.1264.1 ID=prot_E-siliculosus-1a_F_contig12.1264.1|Name=mRNA_E-siliculosus-1a_F_contig12.1264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=164bp
AEIAKIEGGDTAGDARGNRRKAVLQAGLEDLAIGSDDERVQRLYLSLAVL
PDGQRFLVHDAALLLHDRDPTAEDEKSVARVLDILERWSVLRSTRAFVEE
AEWREKLFGNIMPGGRKPGESGTESGRMLSSLFHSIFWGDTQRQRDGKGV
EALSGSLQGQARP*
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mRNA from alignment at E-siliculosus-1a_F_contig12:31701..32579+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12.1264.1 ID=mRNA_E-siliculosus-1a_F_contig12.1264.1|Name=mRNA_E-siliculosus-1a_F_contig12.1264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=879bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12:31701..32579+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGAGATCGCCAAGATCGAAGGAGGTGATACAGCGGGTGATGCTCGAGG
GAATCGGCGGAAGGCCGTTCTCCAGGCCGGCTTGGAGGATCTTGCCATCG
GGTCGGACGACGAGCGCGTGCAGCGTCTGTACTTGTCGCTTGCTGTTTTG
CCGGATGGCCAACGCTTTCTAGTACATGATGCTGCGTTGCTGCTTCATGA
TCGAGATCCTACAGCCGAGGACGAGAAATCGGTGGCACGGGTGTTGGACA
TTTTGGAACGCTGGTCTGTCCTGCGGTCGACACGGGCCTTCGTAGAAGAG
GCCGAGTGGCGAGAGAAGTTGTTTGGAAACATCATGCCGTACGTGATCGT
CGGGTTGGCGGAAGAAAGCCGGGGGAATCTGGAACAGAATCTGGAAGAAT
GTTGTCGTCTTTATTCCATAGTATCTTTTGGGGTGATACCCAACGACAGA
GAGATGGAAAAGGTGTTGAGGCGCTGTCTGGTTCTCTTCAAGGCCAGGCT
AGGCCCTGAGGATGTGTGGGTCGCGAGGACACTCCGCGACCTGGGTGTTG
TTCTTCATCGGGCAGAGCGCCTTGAAGAGGCGGAAGGGTTGTTAAGGGAA
AGTCTGGCACTCTACGAATCAAAGCGGGGTCCGACGGATGCAGGGGTGGC
GAGAACGCTACGTGAGTTAGGAGTATGCGCTCGAAAAAGGGGTGATACAG
ACAATGCGGAGGAGATGATTAGACAGGCCCTAAAGATGCAGGAGACCAAC
AACCTGGATCCAGACGGTTTGGAAACAGGCCTTACATTCTATGAACTAGG
TGTTTGCGCACGAGAGTCTAAGCGCTTCGAGGAGGGGGAGCTACTTTTGA
GGCGGTCGCTGGATATCCTGGAGAAGAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12:31701..32579+

>mRNA_E-siliculosus-1a_F_contig12.1264.1 ID=mRNA_E-siliculosus-1a_F_contig12.1264.1|Name=mRNA_E-siliculosus-1a_F_contig12.1264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12:31701..32579+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGAGATCGCCAAGATCGAAGGAGGTGATACAGCGGGTGATGCTCGAGG
GAATCGGCGGAAGGCCGTTCTCCAGGCCGGCTTGGAGGATCTTGCCATCG
GGTCGGACGACGAGCGCGTGCAGCGTCTGTACTTGTCGCTTGCTGTTTTG
CCGGATGGCCAACGCTTTCTAGTACATGATGCTGCGTTGCTGCTTCATGA
TCGAGATCCTACAGCCGAGGACGAGAAATCGGTGGCACGGGTGTTGGACA
TTTTGGAACGCTGGTCTGTCCTGCGGTCGACACGGGCCTTCGTAGAAGAG
GCCGAGTGGCGAGAGAAGTTGTTTGGAAACATCATGCCGCCGAGATCGCC
AAGATCGAAGGAGGTGATACAGCGGGTGATGCTCGAGGGAATCGGCGGAA
GGCCGTTCTCCAGGCCGGCTTGGAGGATCTTGCCATCGGGTCGGACGACG
AGCGCGTGCAGCGTCTGTACTTGTCGCTTGCTGTTTTGCCGGATGGCCAA
CGCTTTCTAGTACATGATGCTGCGTTGCTGCTTCATGATCGAGATCCTAC
AGCCGAGGACGAGAAATCGGTGGCACGGGTGTTGGACATTTTGGAACGCT
GGTCTGTCCTGCGGTCGACACGGGCCTTCGTAGAAGAGGCCGAGTGGCGA
GAGAAGTTGTTTGGAAACATCATGCCTGGCGGAAGAAAGCCGGGGGAATC
TGGAACAGAATCTGGAAGAATGTTGTCGTCTTTATTCCATAGTATCTTTT
GGGGTGATACCCAACGACAGAGAGATGGAAAAGGTGTTGAGGCGCTGTCT
GGTTCTCTTCAAGGCCAGGCTAGGCCCTGATGGCGGAAGAAAGCCGGGGG
AATCTGGAACAGAATCTGGAAGAATGTTGTCGTCTTTATTCCATAGTATC
TTTTGGGGTGATACCCAACGACAGAGAGATGGAAAAGGTGTTGAGGCGCT
GTCTGGTTCTCTTCAAGGCCAGGCTAGGCCCTGA
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