mRNA_E-siliculosus-1a_F_contig11993.1261.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: E6ZEQ5_ECTSI (Ribosomal protein S2 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ5_ECTSI) HSP 1 Score: 330 bits (846), Expect = 2.700e-113 Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAGPRLASKN 597
M NKKHSRL SLFIGSSGYLVPFP NEYS ISKTLHPFLLGKRNIY FYDLEKSLYGIRA IE+LKNII++EGKILFIG+++S+QSRF QDSNINF+KW+R SITKSK+ADLV+L +VEKENLVEAHRKCLL+VGVGS TMS+ISYPFNLNIESPFLSDWFFGT+YTS VQGKRM K KKK QI+SLLG GPR+ SKN
Sbjct: 1 MFNKKHSRLFSLFIGSSGYLVPFPRNEYSQISKTLHPFLLGKRNIYSFYDLEKSLYGIRATIEVLKNIISSEGKILFIGDDVSMQSRFGQDSNINFLKWERGSITKSKDADLVLLTSVEKENLVEAHRKCLLLVGVGSSTMSRISYPFNLNIESPFLSDWFFGTVYTSCVQGKRMSKGSKKKNQIISLLGKGPRVGSKN 199
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A0U1XD09_9PHAE (Ribosomal protein S2 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD09_9PHAE) HSP 1 Score: 275 bits (703), Expect = 1.070e-91 Identity = 138/192 (71.88%), Postives = 159/192 (82.81%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
M+NKK +RLLS FIGSSGYLVP P NEY ISKT+HPFLLGKRNI+YFY+LEKSLYGIRA +E+ KNII+N G ILFI N ++ RF ++ NIN I+WKR SI+KSKNADLVIL VEKENL+EAHRKCLL+VG+GS TMSKISYPFNLNIESP +SDWF G +YTSY+QG+R KKK QI SLLG G
Sbjct: 1 MINKKQARLLSFFIGSSGYLVPRPYNEYVKISKTMHPFLLGKRNIHYFYNLEKSLYGIRATMEVFKNIISNGGNILFISNSSVLRQRFSKEPNINCIQWKRGSISKSKNADLVILDGVEKENLIEAHRKCLLLVGIGSSTMSKISYPFNLNIESPLISDWFLGVLYTSYIQGRR-----KKKSQIKSLLGKG 187
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A089N0W8_PETFA (Ribosomal protein S2 n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N0W8_PETFA) HSP 1 Score: 275 bits (702), Expect = 1.630e-91 Identity = 139/193 (72.02%), Postives = 158/193 (81.87%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAGP 579
MLNKK +RLLS FIGSSGYLVP P NEY ISKT+HPF+LGKRNI+YFY+LEKSLYGIRA +E+ KNI+A EGKILFI N + RF ++ +IN IKWKR ++ KSK ADLV L VEKENLVEAHRKCLL+VGVGS TMSK+SYPFNLNIESP LSDWFFG++YTSY+QGK KK KK I SLLG GP
Sbjct: 1 MLNKKQARLLSFFIGSSGYLVPRPYNEYVKISKTMHPFILGKRNIHYFYNLEKSLYGIRATMEVFKNIVATEGKILFISNSFPLHRRFGKEPDINCIKWKRGTLAKSKEADLVFLDGVEKENLVEAHRKCLLLVGVGSCTMSKVSYPFNLNIESPLLSDWFFGSIYTSYLQGK---KKKNKKSPINSLLGKGP 190
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A1I9LW48_9PHAE (Ribosomal protein S2 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW48_9PHAE) HSP 1 Score: 272 bits (695), Expect = 2.320e-90 Identity = 136/199 (68.34%), Postives = 161/199 (80.90%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAGPRLASKN 597
MLNKK +RLL LFI SGYLVP P N+Y ISKT+HPFL+GKR+IYYFY+LEKSLYGIRA +E+ KNI+ANEGKILFI + + +QS F +D NI+ IKWKR SI KSKNADLV L N+ KEN+VEAHRKCLL+VG+GS TMSKI+YPFNLN++S FLSDWFFG +YTSYVQGKR+ K K +SLLG G +KN
Sbjct: 1 MLNKKDARLLFLFIRYSGYLVPRPLNDYVKISKTMHPFLVGKRDIYYFYELEKSLYGIRATLEVFKNIVANEGKILFISDSLPLQSCFSRDPNIDCIKWKRGSILKSKNADLVFLSNINKENMVEAHRKCLLLVGLGSPTMSKIAYPFNLNLDSSFLSDWFFGAIYTSYVQGKRLSNKSKNXXXXLSLLGKGQLKINKN 199
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A0U1XC74_SCYLO (Ribosomal protein S2 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XC74_SCYLO) HSP 1 Score: 268 bits (686), Expect = 4.140e-89 Identity = 134/192 (69.79%), Postives = 156/192 (81.25%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
MLNKK +RLLS FIGSSGYLVP P NEY ISKT+HPF+LGKRNI++FYDLEKSLYGIRA +E+ KNI+A+ GKILF+ N ++ RF ++ NIN IKWKR S+ KSK+ DLV L VEKENLVEAHRKCLL+VGVGS TMSKISYPFNLN+ESP LSDWF G +YT+Y+QGK+ KKK I SLLG G
Sbjct: 1 MLNKKQARLLSFFIGSSGYLVPRPYNEYVKISKTMHPFILGKRNIHHFYDLEKSLYGIRATMEVFKNIVASGGKILFVSNSFPLRRRFAKEQNINCIKWKRGSLAKSKDVDLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKISYPFNLNLESPLLSDWFLGAIYTTYLQGKK-----KKKSSITSLLGKG 187
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: Q94Z20_PYLLI (Ribosomal protein S2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z20_PYLLI) HSP 1 Score: 264 bits (674), Expect = 3.890e-87 Identity = 128/192 (66.67%), Postives = 155/192 (80.73%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
M+NKKH RLLS FIGSSGYLVP P NEY ISKT+H +LLGKRN +YFY+LEKSLYGIRA +E+ KNI+A EGKIL I N ++++SRF +SNIN++KWKR S++KS++ DLV L V +ENLVEAHRKCLL+ GVGS TMSKI+YP NLNIESP LSDWF G +YTSY+QG++M K K +V LLG G
Sbjct: 1 MVNKKHERLLSFFIGSSGYLVPRPQNEYVKISKTMHCYLLGKRNNFYFYNLEKSLYGIRATLEVFKNIVAKEGKILLISNSLTLESRFALESNINYLKWKRGSLSKSQDVDLVFLSGVNRENLVEAHRKCLLLSGVGSSTMSKIAYPVNLNIESPLLSDWFLGALYTSYIQGQKMKKTRKTSLPVVRLLGQG 192
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A3G5FPL4_9PHAE (Ribosomal protein S2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPL4_9PHAE) HSP 1 Score: 263 bits (672), Expect = 6.630e-87 Identity = 133/192 (69.27%), Postives = 154/192 (80.21%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
MLNKKH+RL+SLF+G SGYLVP P NEY ISKT++PFLLGKRNIYYFYDLEKSLYGIRA +E+LKNI+ANEGK+LFI + + SRF +N+N IKWKR S+ KSKNADLV L VEKENLVEAHRKCLL+VG+GS TMSKISYPFNLN SP LSDW FG + S V+G R +L+KK+ I LG G
Sbjct: 1 MLNKKHARLISLFVGYSGYLVPRPYNEYVKISKTIYPFLLGKRNIYYFYDLEKSLYGIRATMEVLKNIVANEGKVLFISDSPVLHSRFNLGANLNCIKWKRGSLAKSKNADLVFLSGVEKENLVEAHRKCLLLVGIGSSTMSKISYPFNLNCNSPLLSDWLFGALSISCVRGLR---ELRKKRPIPKFLGKG 189
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A2H4ZR15_9PHAE (Ribosomal protein S2 n=2 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A2H4ZR15_9PHAE) HSP 1 Score: 257 bits (657), Expect = 1.150e-84 Identity = 132/192 (68.75%), Postives = 152/192 (79.17%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
M NK +RLLS IGSSGYLVP P NEY ISKT+HPF+LGKRNI+YFY+LEKS+YGIRA +E+ KNII+NEGK LFI N + RF ++ NIN IKWKR + KSK+ADLV L VEKENLVEAHRKCLL+VGVGS TMSKISYPFNLNIES L+DWFFG +YTSY++GK K KK+ I SLLG G
Sbjct: 1 MKNKNQARLLSFLIGSSGYLVPRPYNEYVKISKTMHPFILGKRNIHYFYNLEKSVYGIRATMEVFKNIISNEGKTLFISNSFPLSQRFVKEPNINCIKWKRGVLAKSKDADLVFLDGVEKENLVEAHRKCLLLVGVGSPTMSKISYPFNLNIESSLLTDWFFGIIYTSYLKGKE---KKKKRSPINSLLGKG 189
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A4D6E4R0_9PHAE (Ribosomal protein S2 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4R0_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.880e-80 Identity = 126/192 (65.62%), Postives = 153/192 (79.69%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLLGAG 576
M+ +HSRL+S IGSSGYLVP P NE ISKT+HP+LLGKRNIYYFY+LEKSLYGIRA +E+LKNII+ EGKILF+ + ++ +SNI++IKWKRS + KSK+ADLV+L N+EKENLVEAHRKCLL+VGVGS TMSK+SYPFNLNIESP LS WFF +Y + V+ RM K KK++ SLLG G
Sbjct: 1 MIRTEHSRLISFLIGSSGYLVPRPFNEDVLISKTMHPYLLGKRNIYYFYNLEKSLYGIRATLEVLKNIISAEGKILFVSDSPLLKICISHESNISYIKWKRSYLAKSKDADLVVLSNIEKENLVEAHRKCLLLVGVGSPTMSKVSYPFNLNIESPLLSSWFFSLIYMTCVRSNRMKSK-KKRRVFSSLLGRG 191
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Match: A0A4D6E513_9PHAE (Ribosomal protein S2 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E513_9PHAE) HSP 1 Score: 244 bits (623), Expect = 3.420e-79 Identity = 127/189 (67.20%), Postives = 151/189 (79.89%), Query Frame = 1
Query: 1 MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDLEKSLYGIRAAIEILKNIIANEGKILFIGNEISIQSRFRQDSNINFIKWKRSSITKSKNADLVILRNVEKENLVEAHRKCLLVVGVGSFTMSKISYPFNLNIESPFLSDWFFGTMYTSYVQGKRMGKKLKKKKQIVSLL 567
M+ +HSR++S IGSSGYLVP P NE ISKT+HP+LLGKRNIYYFY+LEKSLYGIRA +EILKNII EGKILF+ N ++ +SNI++IKWKRS ++KSK+ DLV L ++EKENLVEAHRKCLL+VGVGS TMSKISYPFNLNIESP LS WFF +Y + V+GKRM K KKK Q+ S L
Sbjct: 1 MIITEHSRIISFLIGSSGYLVPRPFNEDVIISKTMHPYLLGKRNIYYFYNLEKSLYGIRATLEILKNIILVEGKILFVSNSPLLKICLSNESNISYIKWKRSYLSKSKDVDLVFLSDIEKENLVEAHRKCLLLVGVGSPTMSKISYPFNLNIESPLLSSWFFSLIYMTCVKGKRM--KSKKKGQVFSSL 187 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11993.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11993.1261.1 >prot_E-siliculosus-1a_F_contig11993.1261.1 ID=prot_E-siliculosus-1a_F_contig11993.1261.1|Name=mRNA_E-siliculosus-1a_F_contig11993.1261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=199bp MLNKKHSRLLSLFIGSSGYLVPFPSNEYSPISKTLHPFLLGKRNIYYFYDback to top mRNA from alignment at E-siliculosus-1a_F_contig11993:1087..1683+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11993.1261.1 ID=mRNA_E-siliculosus-1a_F_contig11993.1261.1|Name=mRNA_E-siliculosus-1a_F_contig11993.1261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=597bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11993:1087..1683+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11993:1087..1683+ >mRNA_E-siliculosus-1a_F_contig11993.1261.1 ID=mRNA_E-siliculosus-1a_F_contig11993.1261.1|Name=mRNA_E-siliculosus-1a_F_contig11993.1261.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11993:1087..1683+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |