mRNA_E-siliculosus-1a_F_contig11990.1259.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11990.1259.1
Unique NamemRNA_E-siliculosus-1a_F_contig11990.1259.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11990.1259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11990contigE-siliculosus-1a_F_contig11990:98..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size630
Model size630
Exons3
Ec32 orthologEc-00_003510.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11990.1259.1prot_E-siliculosus-1a_F_contig11990.1259.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11990 98..1193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.650826-CDS-E-siliculosus-1a_F_contig11990:97..1981622927716.650826-CDS-E-siliculosus-1a_F_contig11990:97..198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 98..198 +
1696318651.6429632-CDS-E-siliculosus-1a_F_contig11990:97..1981696318651.6429632-CDS-E-siliculosus-1a_F_contig11990:97..198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 98..198 +
1622927716.664311-CDS-E-siliculosus-1a_F_contig11990:342..4711622927716.664311-CDS-E-siliculosus-1a_F_contig11990:342..471Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 343..471 +
1696318651.6516597-CDS-E-siliculosus-1a_F_contig11990:342..4711696318651.6516597-CDS-E-siliculosus-1a_F_contig11990:342..471Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 343..471 +
1622927716.6752462-CDS-E-siliculosus-1a_F_contig11990:793..11931622927716.6752462-CDS-E-siliculosus-1a_F_contig11990:793..1193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 794..1193 +
1696318651.6628158-CDS-E-siliculosus-1a_F_contig11990:793..11931696318651.6628158-CDS-E-siliculosus-1a_F_contig11990:793..1193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11990 794..1193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11990.1259.1

>prot_E-siliculosus-1a_F_contig11990.1259.1 ID=prot_E-siliculosus-1a_F_contig11990.1259.1|Name=mRNA_E-siliculosus-1a_F_contig11990.1259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=210bp
TLFGLRSVATAVNYQEREWGEGSQGRCLASPEEKTRAEETLASDDQRILQ
PAGHDPNRRMHFLYDNVGTFLCKVKTSRRHAIRLQSEIYHRADQERELRQ
PVRVSQHLTPPPVVGNRVWEPVIGFDVELLLPKALAGGAVKDFWYRVRVC
ELDSNGKVVFGFLVSQARTEKITKFSSVYDYDEVVRKKGYVVRPGTHLTW
KVMPTSAAP*
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mRNA from alignment at E-siliculosus-1a_F_contig11990:98..1193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11990.1259.1 ID=mRNA_E-siliculosus-1a_F_contig11990.1259.1|Name=mRNA_E-siliculosus-1a_F_contig11990.1259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11990:98..1193+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGCTGTTCGGCCTCCGTAGCGTGGCGACGGCCGTAAATTACCAGGAGCG
GGAATGGGGTGAAGGTTCACAGGGCCGATGCCTAGCCTCGCCGGAAGAAA
AGTGAGTATAGACAGGTAGGTGGTGTCGGAAATCATCGCTTCTGGCGTGC
GGAGTCATCTGAAAAACTGCCAAACTACTGTATGTACCTACTCCCGTCTC
GCTTGAACGACATGGCTTCTTCGTGGCTCCTCCTATCGGCTGCAGGACGC
GGGCAGAAGAAACGTTGGCGTCAGATGACCAGCGTATCCTTCAACCTGCA
GGCCATGATCCGAACAGACGAATGCATTTCCTGTACGACAACGTTGGCAC
CTTTCTGTGCAAGGTCAAGACCAGGTACAAATGGTTCAACCCTCACGAGA
GGCTGGGAAGGATGACGAAACACACCAGGAAGATTGGATACTAGCGAATG
GTACCACTCTGGTCGTAGAGGGGAATGAACCCTTTGGTGTGAAAGATCTC
TTTTGTGAGTCTTCAAGTTTGGTCGAACCTCCAACGATGTAGTAGAAGTA
CATGAGATGGAATCTTCCTTGAAGATGGAGATGGATCATCTGGTCGTAGT
CTCGGACCGCATGCCATTCGAACGCTCAACCCATCATTTCGCCCCCCCTA
AGCCCCGGTTTTCGTATGTGGACGACCGACCACCGACTTCGAACAGCCGC
CGCCACGCGATACGGCTGCAGTCGGAGATCTACCACAGGGCTGACCAAGA
GCGGGAGCTACGGCAGCCGGTCCGCGTGTCGCAGCACCTGACACCGCCAC
CAGTGGTTGGAAACCGAGTTTGGGAGCCCGTCATCGGGTTTGATGTGGAA
TTGCTCTTGCCCAAGGCGCTCGCTGGGGGTGCCGTGAAGGACTTCTGGTA
CCGCGTAAGGGTTTGCGAGTTGGATAGCAATGGAAAGGTCGTGTTCGGCT
TCCTCGTCAGTCAAGCAAGAACTGAAAAGATAACAAAGTTTTCGTCAGTG
TACGACTATGACGAGGTCGTCCGAAAGAAGGGATACGTGGTCCGCCCCGG
TACGCACCTCACGTGGAAAGTCATGCCTACATCGGCGGCACCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11990:98..1193+

>mRNA_E-siliculosus-1a_F_contig11990.1259.1 ID=mRNA_E-siliculosus-1a_F_contig11990.1259.1|Name=mRNA_E-siliculosus-1a_F_contig11990.1259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11990:98..1193+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGCTGTTCGGCCTCCGTAGCGTGGCGACGGCCGTAAATTACCAGGAGCG
GGAATGGGGTGAAGGTTCACAGGGCCGATGCCTAGCCTCGCCGGAAGAAA
AACGCTGTTCGGCCTCCGTAGCGTGGCGACGGCCGTAAATTACCAGGAGC
GGGAATGGGGTGAAGGTTCACAGGGCCGATGCCTAGCCTCGCCGGAAGAA
AAGACGCGGGCAGAAGAAACGTTGGCGTCAGATGACCAGCGTATCCTTCA
ACCTGCAGGCCATGATCCGAACAGACGAATGCATTTCCTGTACGACAACG
TTGGCACCTTTCTGTGCAAGGTCAAGACCAGGACGCGGGCAGAAGAAACG
TTGGCGTCAGATGACCAGCGTATCCTTCAACCTGCAGGCCATGATCCGAA
CAGACGAATGCATTTCCTGTACGACAACGTTGGCACCTTTCTGTGCAAGG
TCAAGACCAGCCGCCGCCACGCGATACGGCTGCAGTCGGAGATCTACCAC
AGGGCTGACCAAGAGCGGGAGCTACGGCAGCCGGTCCGCGTGTCGCAGCA
CCTGACACCGCCACCAGTGGTTGGAAACCGAGTTTGGGAGCCCGTCATCG
GGTTTGATGTGGAATTGCTCTTGCCCAAGGCGCTCGCTGGGGGTGCCGTG
AAGGACTTCTGGTACCGCGTAAGGGTTTGCGAGTTGGATAGCAATGGAAA
GGTCGTGTTCGGCTTCCTCGTCAGTCAAGCAAGAACTGAAAAGATAACAA
AGTTTTCGTCAGTGTACGACTATGACGAGGTCGTCCGAAAGAAGGGATAC
GTGGTCCGCCCCGGTACGCACCTCACGTGGAAAGTCATGCCTACATCGGC
GGCACCATGACCGCCGCCACGCGATACGGCTGCAGTCGGAGATCTACCAC
AGGGCTGACCAAGAGCGGGAGCTACGGCAGCCGGTCCGCGTGTCGCAGCA
CCTGACACCGCCACCAGTGGTTGGAAACCGAGTTTGGGAGCCCGTCATCG
GGTTTGATGTGGAATTGCTCTTGCCCAAGGCGCTCGCTGGGGGTGCCGTG
AAGGACTTCTGGTACCGCGTAAGGGTTTGCGAGTTGGATAGCAATGGAAA
GGTCGTGTTCGGCTTCCTCGTCAGTCAAGCAAGAACTGAAAAGATAACAA
AGTTTTCGTCAGTGTACGACTATGACGAGGTCGTCCGAAAGAAGGGATAC
GTGGTCCGCCCCGGTACGCACCTCACGTGGAAAGTCATGCCTACATCGGC
GGCACCATGA
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