mRNA_E-siliculosus-1a_F_contig1199.1257.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1199.1257.1
Unique NamemRNA_E-siliculosus-1a_F_contig1199.1257.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1199.1257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1199contigE-siliculosus-1a_F_contig1199:26504..27269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size207
Model size766
Exons1
Ec32 orthologEc-15_002860.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.5964031-CDS-E-siliculosus-1a_F_contig1199:26503..267101622927716.5964031-CDS-E-siliculosus-1a_F_contig1199:26503..26710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 26504..26710 +
1696318651.6245887-CDS-E-siliculosus-1a_F_contig1199:26503..267101696318651.6245887-CDS-E-siliculosus-1a_F_contig1199:26503..26710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1199 26504..26710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.6116374-UTR-E-siliculosus-1a_F_contig1199:26710..272691622927716.6116374-UTR-E-siliculosus-1a_F_contig1199:26710..27269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1199 26711..27269 +
1696318651.634006-UTR-E-siliculosus-1a_F_contig1199:26710..272691696318651.634006-UTR-E-siliculosus-1a_F_contig1199:26710..27269Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1199 26711..27269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1199.1257.1prot_E-siliculosus-1a_F_contig1199.1257.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1199 26504..26710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1199.1257.1

>prot_E-siliculosus-1a_F_contig1199.1257.1 ID=prot_E-siliculosus-1a_F_contig1199.1257.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
MQQGHCTGVVLGADTGVLSDSLPCNIPCCISRCSRGPLYAGVASWAGHVG
TLLLNRLLRRLSAVSLDG*
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mRNA from alignment at E-siliculosus-1a_F_contig1199:26504..27269+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1199.1257.1 ID=mRNA_E-siliculosus-1a_F_contig1199.1257.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=766bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1199:26504..27269+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGCAGGGTCATTGTACGGGGGTGGTTCTTGGAGCGGACACGGGGGT
GCTCAGTGACTCATTGCCATGCAATATACCGTGTTGCATCTCACGATGCA
GCCGCGGGCCGTTGTACGCCGGGGTTGCCTCTTGGGCAGGACACGTGGGT
ACGCTTCTGCTGAATCGCCTTTTACGACGTTTATCCGCTGTTTCGTTGGA
CGGGTAGTATGTTTTTCAAGGGAACAGTGGCAAGCGCGGCCGTATACAAC
CAGGGTTGACTCCTATCTCCCTACGGGACAAACTGACGAGAGTTATCGGA
ATCGACGCTGCTGCTGCTGCTGTGTCCGCGCACATGTTAATGTGGCAGGC
GCGTGAAGCTTGAGTCGCATTGTGCTACCGTGAAATGTAGGGCCGGCAGC
GGCATTAACAACCACAAATCCATGGCCACGTCGCGTGATGTGTATCGTTG
TACCTGTTGTGGTGTTCTTTTGTTCTTGGTTTATTGGGGAACGACATTTT
GAGCGCTCCGAGATTAAGGCTGTTTTGTTGCAGCGCTTAAAGCTATTCAT
TGTAGCCGTAATCAAGAATTTATTGTGAGGATCGTGGACGCGCGACTGCT
GTGTCGGACGTCGCGGCTGGGGCCGCACCAACAGAGGAAGCAGTACCGCT
ATCAGAATTTAGTTTCCCTGTTGTGTCGCGAGAACAAAGGTTTTAGGGCG
CGCGTGGGATGAGGTAGGTCCCCACAGCAACTTTGCGTGGTTGCAACGTG
GCCAACTAACTAATCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1199:26504..27269+

>mRNA_E-siliculosus-1a_F_contig1199.1257.1 ID=mRNA_E-siliculosus-1a_F_contig1199.1257.1|Name=mRNA_E-siliculosus-1a_F_contig1199.1257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1199:26504..27269+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGCAGGGTCATTGTACGGGGGTGGTTCTTGGAGCGGACACGGGGGT
GCTCAGTGACTCATTGCCATGCAATATACCGTGTTGCATCTCACGATGCA
GCCGCGGGCCGTTGTACGCCGGGGTTGCCTCTTGGGCAGGACACGTGGGT
ACGCTTCTGCTGAATCGCCTTTTACGACGTTTATCCGCTGTTTCGTTGGA
CGGGTAGATGCAGCAGGGTCATTGTACGGGGGTGGTTCTTGGAGCGGACA
CGGGGGTGCTCAGTGACTCATTGCCATGCAATATACCGTGTTGCATCTCA
CGATGCAGCCGCGGGCCGTTGTACGCCGGGGTTGCCTCTTGGGCAGGACA
CGTGGGTACGCTTCTGCTGAATCGCCTTTTACGACGTTTATCCGCTGTTT
CGTTGGACGGGTAG
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