mRNA_E-siliculosus-1a_F_contig1197.1250.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1197.1250.1
Unique NamemRNA_E-siliculosus-1a_F_contig1197.1250.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: UPI001C99FCC5 (hypothetical protein n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI001C99FCC5)

HSP 1 Score: 160 bits (404), Expect = 7.040e-49
Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
            +RLFL+AST+ IY  TVIAI GHGWLWP+V F DLT  +WRSQF+ DF++YL LSS WIVWREG+T K+Y  GFLN+FLGGMFGFPYLL+ +Y A G I+K++LG +A
Sbjct:    4 LRLFLIASTLGIYASTVIAIAGHGWLWPVVAFNDLTALNWRSQFDFDFIIYLLLSSTWIVWREGATAKAYVYGFLNVFLGGMFGFPYLLVESYRANGDIRKILLGTNA 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A5E8H572_ROSAD (Uncharacterized protein n=1 Tax=Roseibium alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11) TaxID=244592 RepID=A0A5E8H572_ROSAD)

HSP 1 Score: 159 bits (403), Expect = 1.450e-48
Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
            +R+FL+ASTV IY  T+IAIVGHGWLWP+    DL   +WRSQFN DF++YL LSSCWIVWREG+  K+Y  GFLNIFLGGMFGFPYLL+ +Y AKG +K+++LGV+A
Sbjct:    4 LRIFLVASTVGIYALTLIAIVGHGWLWPVTAIRDLVALNWRSQFNFDFVIYLVLSSCWIVWREGAGGKAYLYGFLNIFLGGMFGFPYLLLLSYRAKGDVKRILLGVNA 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A6P0RAJ6_9CYAN (Uncharacterized protein n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0RAJ6_9CYAN)

HSP 1 Score: 139 bits (350), Expect = 1.300e-40
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            +R FL+ STV+IY+ T+  +V  G  WP VYF D+   DWRSQFNSDFL++L L + WI WREG T+K +  GFL+IF+GGMFGFPYLL ATY AKG  K+++LGVH
Sbjct:    4 LRFFLVISTVIIYLLTIYPLVTKGINWPAVYFSDILHLDWRSQFNSDFLIHLFLLATWISWREGFTVKGFIFGFLSIFMGGMFGFPYLLYATYKAKGEPKEILLGVH 110          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A2G1VZX4_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1VZX4_9BACT)

HSP 1 Score: 136 bits (343), Expect = 1.930e-39
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
            +R+FL+ +TV+IYV TV+A V  G  WP V   DLT  +WRSQF++DFL+YL L + WI WREG TIK +   FL++FLGGMF FPYLL+ATY  KG  KK++LGVHA
Sbjct:    4 LRVFLIFATVLIYVMTVLASVSQGINWPAVALNDLTALNWRSQFDTDFLIYLALGATWITWREGFTIKGHCFAFLSVFLGGMFSFPYLLLATYRTKGDPKKLLLGVHA 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: K9Q3J0_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7376 TaxID=111781 RepID=K9Q3J0_9CYAN)

HSP 1 Score: 134 bits (338), Expect = 8.460e-39
Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            +R FL+ STV I+  T+ A++G G+ WP VYF DL   +WRSQFN+DFL++L L   WI WREG + K +  GFL+IFLGGMFGFPYLL ATY A+G+ K+++LGVH
Sbjct:    4 LRTFLIFSTVAIFGVTIYAVIGQGFNWPAVYFGDLLYLNWRSQFNTDFLIHLFLLGTWISWREGFSAKGFVFGFLSIFLGGMFGFPYLLYATYQAQGNPKEILLGVH 110          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: M5TAQ1_9BACT (Putative membrane protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TAQ1_9BACT)

HSP 1 Score: 130 bits (327), Expect = 5.240e-37
Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
            +R+FL+A+TV+IY  T++A    G  WP V   DL   +WRSQF++DFLVYL L++ WI WREG T K Y   FLNIFLGGMFGFPYLL +TY A G    V+LGVHA
Sbjct:    4 LRVFLVAATVLIYAVTLLATASQGINWPAVALNDLVALNWRSQFDTDFLVYLILTAVWIAWREGLTTKGYSFAFLNIFLGGMFGFPYLLWSTYQANGDPTLVLLGVHA 111          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A2N5X0D0_9GAMM (Uncharacterized protein n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5X0D0_9GAMM)

HSP 1 Score: 127 bits (318), Expect = 8.810e-36
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    4 RLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            R+ L  ST+ IY  TVIAIV HGW WPL+   DL   +WRSQF+ DF+++L L   W+VWREG   ++Y  GFL++ +GGMF FPY++ AT+ A G  ++++LGVH
Sbjct:    5 RILLTVSTIAIYTLTVIAIVAHGWNWPLIAINDLLALNWRSQFDFDFIIHLLLLGSWVVWREGGNSRAYLFGFLSVVMGGMFSFPYIIYATFQASGKPRELLLGVH 110          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: M2ARR3_9BACT (Putative membrane protein n=4 Tax=Rhodopirellula TaxID=265488 RepID=M2ARR3_9BACT)

HSP 1 Score: 126 bits (316), Expect = 5.490e-35
Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            +R+FL+ +T++IY  TVIA +  G  WP V   DL   +WRSQF++DFL+YL L + WI WREG T K +F  FL++FLGGMF FPYLL+AT+ A G  +K++LG+H
Sbjct:   31 LRVFLLFATLLIYAMTVIASLSEGINWPSVAINDLMAFNWRSQFDTDFLIYLFLGATWITWREGFTPKGHFFAFLSVFLGGMFSFPYLLLATFQADGDPRKILLGIH 137          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: Q7UZ99_RHOBA (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=Q7UZ99_RHOBA)

HSP 1 Score: 126 bits (316), Expect = 6.940e-35
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            +R+FL+ STV+IY  T+IA +  G  WP V   DL   +WRSQF++DFL+YL L + WI WREG T K ++  FL++FLGGMF FPYLL+AT+ A G  +KV+LG+H
Sbjct:   39 LRVFLLFSTVLIYSMTLIASLSDGINWPSVATNDLIAFNWRSQFDTDFLIYLLLGATWITWREGFTAKGHYYAFLSVFLGGMFSFPYLLLATFKADGDPRKVLLGIH 145          
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: F2AMK1_RHOBT (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=F2AMK1_RHOBT)

HSP 1 Score: 126 bits (316), Expect = 1.040e-34
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
            +R+FL+ STV+IY  T+IA +  G  WP V   DL   +WRSQF++DF +YL LS+ WI WREG T K ++  FL++FLGGMF FPYLL+AT+ A G  +KV+LG+H
Sbjct:   53 LRVFLLFSTVLIYSMTLIASLSDGINWPSVATNDLIAFNWRSQFDTDFFIYLLLSATWITWREGFTAKGHYYAFLSVFLGGMFSFPYLLLATFKADGDPRKVLLGIH 159          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C99FCC57.040e-4966.67hypothetical protein n=1 Tax=Tateyamaria omphalii ... [more]
A0A5E8H572_ROSAD1.450e-4866.67Uncharacterized protein n=1 Tax=Roseibium alexandr... [more]
A0A6P0RAJ6_9CYAN1.300e-4059.81Uncharacterized protein n=2 Tax=unclassified Okean... [more]
A0A2G1VZX4_9BACT1.930e-3959.26Uncharacterized protein n=1 Tax=Rhodopirellula bah... [more]
K9Q3J0_9CYAN8.460e-3957.94Uncharacterized protein n=1 Tax=Leptolyngbya sp. P... [more]
M5TAQ1_9BACT5.240e-3758.33Putative membrane protein n=2 Tax=Rhodopirellula T... [more]
A0A2N5X0D0_9GAMM8.810e-3650.94Uncharacterized protein n=1 Tax=Pseudohalioglobus ... [more]
M2ARR3_9BACT5.490e-3553.27Putative membrane protein n=4 Tax=Rhodopirellula T... [more]
Q7UZ99_RHOBA6.940e-3554.21Uncharacterized protein n=2 Tax=Rhodopirellula bal... [more]
F2AMK1_RHOBT1.040e-3454.21Uncharacterized protein n=2 Tax=Rhodopirellula bal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1197contigE-siliculosus-1a_F_contig1197:3644..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size327
Model size327
Exons1
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelBacteria
EggNOG OGs2DRRT@1,32ZUM@2
Seed eggNOG ortholog111781.Lepto7376_3446
Seed ortholog evalue1.1e-29
Seed ortholog score136.0
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.4896376-CDS-E-siliculosus-1a_F_contig1197:3643..39701622927714.4896376-CDS-E-siliculosus-1a_F_contig1197:3643..3970Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1197 3644..3970 -
1696318650.7633202-CDS-E-siliculosus-1a_F_contig1197:3643..39701696318650.7633202-CDS-E-siliculosus-1a_F_contig1197:3643..3970Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1197 3644..3970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1197.1250.1prot_E-siliculosus-1a_F_contig1197.1250.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1197 3644..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1197.1250.1

>prot_E-siliculosus-1a_F_contig1197.1250.1 ID=prot_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLV
YLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIK
KVVLGVHA*
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mRNA from alignment at E-siliculosus-1a_F_contig1197:3644..3970-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1197.1250.1 ID=mRNA_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=327bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1197:3644..3970- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTCTATTTCTGATGGCATCAACAGTCATGATCTATGTTCAAACGGT TATTGCCATCGTTGGGCATGGGTGGCTTTGGCCTCTTGTTTACTTTCCGG ACCTGACCACAAAGGACTGGCGCTCTCAATTCAACTCCGACTTTTTAGTT TATCTGACATTGTCTTCGTGTTGGATTGTTTGGCGCGAAGGAAGTACGAT AAAATCGTATTTTAATGGCTTTTTGAACATCTTCCTTGGGGGAATGTTCG GCTTCCCCTACTTGCTGATTGCCACCTACAGTGCAAAGGGTCACATTAAG AAAGTAGTTCTTGGCGTCCATGCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1197:3644..3970-

>mRNA_E-siliculosus-1a_F_contig1197.1250.1 ID=mRNA_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1197:3644..3970- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTCTATTTCTGATGGCATCAACAGTCATGATCTATGTTCAAACGGT
TATTGCCATCGTTGGGCATGGGTGGCTTTGGCCTCTTGTTTACTTTCCGG
ACCTGACCACAAAGGACTGGCGCTCTCAATTCAACTCCGACTTTTTAGTT
TATCTGACATTGTCTTCGTGTTGGATTGTTTGGCGCGAAGGAAGTACGAT
AAAATCGTATTTTAATGGCTTTTTGAACATCTTCCTTGGGGGAATGTTCG
GCTTCCCCTACTTGCTGATTGCCACCTACAGTGCAAAGGGTCACATTAAG
AAAGTAGTTCTTGGCGTCCATGCCTGAATGCGTCTATTTCTGATGGCATC
AACAGTCATGATCTATGTTCAAACGGTTATTGCCATCGTTGGGCATGGGT
GGCTTTGGCCTCTTGTTTACTTTCCGGACCTGACCACAAAGGACTGGCGC
TCTCAATTCAACTCCGACTTTTTAGTTTATCTGACATTGTCTTCGTGTTG
GATTGTTTGGCGCGAAGGAAGTACGATAAAATCGTATTTTAATGGCTTTT
TGAACATCTTCCTTGGGGGAATGTTCGGCTTCCCCTACTTGCTGATTGCC
ACCTACAGTGCAAAGGGTCACATTAAGAAAGTAGTTCTTGGCGTCCATGC
CTGA
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