mRNA_E-siliculosus-1a_F_contig1197.1250.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: UPI001C99FCC5 (hypothetical protein n=1 Tax=Tateyamaria omphalii TaxID=299262 RepID=UPI001C99FCC5) HSP 1 Score: 160 bits (404), Expect = 7.040e-49 Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
+RLFL+AST+ IY TVIAI GHGWLWP+V F DLT +WRSQF+ DF++YL LSS WIVWREG+T K+Y GFLN+FLGGMFGFPYLL+ +Y A G I+K++LG +A
Sbjct: 4 LRLFLIASTLGIYASTVIAIAGHGWLWPVVAFNDLTALNWRSQFDFDFIIYLLLSSTWIVWREGATAKAYVYGFLNVFLGGMFGFPYLLVESYRANGDIRKILLGTNA 111
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A5E8H572_ROSAD (Uncharacterized protein n=1 Tax=Roseibium alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11) TaxID=244592 RepID=A0A5E8H572_ROSAD) HSP 1 Score: 159 bits (403), Expect = 1.450e-48 Identity = 72/108 (66.67%), Postives = 89/108 (82.41%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
+R+FL+ASTV IY T+IAIVGHGWLWP+ DL +WRSQFN DF++YL LSSCWIVWREG+ K+Y GFLNIFLGGMFGFPYLL+ +Y AKG +K+++LGV+A
Sbjct: 4 LRIFLVASTVGIYALTLIAIVGHGWLWPVTAIRDLVALNWRSQFNFDFVIYLVLSSCWIVWREGAGGKAYLYGFLNIFLGGMFGFPYLLLLSYRAKGDVKRILLGVNA 111
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A6P0RAJ6_9CYAN (Uncharacterized protein n=2 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0RAJ6_9CYAN) HSP 1 Score: 139 bits (350), Expect = 1.300e-40 Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
+R FL+ STV+IY+ T+ +V G WP VYF D+ DWRSQFNSDFL++L L + WI WREG T+K + GFL+IF+GGMFGFPYLL ATY AKG K+++LGVH
Sbjct: 4 LRFFLVISTVIIYLLTIYPLVTKGINWPAVYFSDILHLDWRSQFNSDFLIHLFLLATWISWREGFTVKGFIFGFLSIFMGGMFGFPYLLYATYKAKGEPKEILLGVH 110
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A2G1VZX4_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1VZX4_9BACT) HSP 1 Score: 136 bits (343), Expect = 1.930e-39 Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
+R+FL+ +TV+IYV TV+A V G WP V DLT +WRSQF++DFL+YL L + WI WREG TIK + FL++FLGGMF FPYLL+ATY KG KK++LGVHA
Sbjct: 4 LRVFLIFATVLIYVMTVLASVSQGINWPAVALNDLTALNWRSQFDTDFLIYLALGATWITWREGFTIKGHCFAFLSVFLGGMFSFPYLLLATYRTKGDPKKLLLGVHA 111
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: K9Q3J0_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7376 TaxID=111781 RepID=K9Q3J0_9CYAN) HSP 1 Score: 134 bits (338), Expect = 8.460e-39 Identity = 62/107 (57.94%), Postives = 81/107 (75.70%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
+R FL+ STV I+ T+ A++G G+ WP VYF DL +WRSQFN+DFL++L L WI WREG + K + GFL+IFLGGMFGFPYLL ATY A+G+ K+++LGVH
Sbjct: 4 LRTFLIFSTVAIFGVTIYAVIGQGFNWPAVYFGDLLYLNWRSQFNTDFLIHLFLLGTWISWREGFSAKGFVFGFLSIFLGGMFGFPYLLYATYQAQGNPKEILLGVH 110
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: M5TAQ1_9BACT (Putative membrane protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TAQ1_9BACT) HSP 1 Score: 130 bits (327), Expect = 5.240e-37 Identity = 63/108 (58.33%), Postives = 77/108 (71.30%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVHA 324
+R+FL+A+TV+IY T++A G WP V DL +WRSQF++DFLVYL L++ WI WREG T K Y FLNIFLGGMFGFPYLL +TY A G V+LGVHA
Sbjct: 4 LRVFLVAATVLIYAVTLLATASQGINWPAVALNDLVALNWRSQFDTDFLVYLILTAVWIAWREGLTTKGYSFAFLNIFLGGMFGFPYLLWSTYQANGDPTLVLLGVHA 111
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: A0A2N5X0D0_9GAMM (Uncharacterized protein n=1 Tax=Pseudohalioglobus lutimaris TaxID=1737061 RepID=A0A2N5X0D0_9GAMM) HSP 1 Score: 127 bits (318), Expect = 8.810e-36 Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 4 RLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
R+ L ST+ IY TVIAIV HGW WPL+ DL +WRSQF+ DF+++L L W+VWREG ++Y GFL++ +GGMF FPY++ AT+ A G ++++LGVH
Sbjct: 5 RILLTVSTIAIYTLTVIAIVAHGWNWPLIAINDLLALNWRSQFDFDFIIHLLLLGSWVVWREGGNSRAYLFGFLSVVMGGMFSFPYIIYATFQASGKPRELLLGVH 110
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: M2ARR3_9BACT (Putative membrane protein n=4 Tax=Rhodopirellula TaxID=265488 RepID=M2ARR3_9BACT) HSP 1 Score: 126 bits (316), Expect = 5.490e-35 Identity = 57/107 (53.27%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
+R+FL+ +T++IY TVIA + G WP V DL +WRSQF++DFL+YL L + WI WREG T K +F FL++FLGGMF FPYLL+AT+ A G +K++LG+H
Sbjct: 31 LRVFLLFATLLIYAMTVIASLSEGINWPSVAINDLMAFNWRSQFDTDFLIYLFLGATWITWREGFTPKGHFFAFLSVFLGGMFSFPYLLLATFQADGDPRKILLGIH 137
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: Q7UZ99_RHOBA (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=Q7UZ99_RHOBA) HSP 1 Score: 126 bits (316), Expect = 6.940e-35 Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
+R+FL+ STV+IY T+IA + G WP V DL +WRSQF++DFL+YL L + WI WREG T K ++ FL++FLGGMF FPYLL+AT+ A G +KV+LG+H
Sbjct: 39 LRVFLLFSTVLIYSMTLIASLSDGINWPSVATNDLIAFNWRSQFDTDFLIYLLLGATWITWREGFTAKGHYYAFLSVFLGGMFSFPYLLLATFKADGDPRKVLLGIH 145
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Match: F2AMK1_RHOBT (Uncharacterized protein n=2 Tax=Rhodopirellula baltica TaxID=265606 RepID=F2AMK1_RHOBT) HSP 1 Score: 126 bits (316), Expect = 1.040e-34 Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVYLTLSSCWIVWREGSTIKSYFNGFLNIFLGGMFGFPYLLIATYSAKGHIKKVVLGVH 321
+R+FL+ STV+IY T+IA + G WP V DL +WRSQF++DF +YL LS+ WI WREG T K ++ FL++FLGGMF FPYLL+AT+ A G +KV+LG+H
Sbjct: 53 LRVFLLFSTVLIYSMTLIASLSDGINWPSVATNDLIAFNWRSQFDTDFFIYLLLSATWITWREGFTAKGHYYAFLSVFLGGMFSFPYLLLATFKADGDPRKVLLGIH 159 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1197.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1197.1250.1 >prot_E-siliculosus-1a_F_contig1197.1250.1 ID=prot_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp MRLFLMASTVMIYVQTVIAIVGHGWLWPLVYFPDLTTKDWRSQFNSDFLVback to top mRNA from alignment at E-siliculosus-1a_F_contig1197:3644..3970- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1197.1250.1 ID=mRNA_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=327bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1197:3644..3970- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1197:3644..3970- >mRNA_E-siliculosus-1a_F_contig1197.1250.1 ID=mRNA_E-siliculosus-1a_F_contig1197.1250.1|Name=mRNA_E-siliculosus-1a_F_contig1197.1250.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1197:3644..3970- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |