mRNA_E-siliculosus-1a_F_contig11966.1249.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 263 bits (672), Expect = 1.510e-86 Identity = 149/180 (82.78%), Postives = 152/180 (84.44%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGSL--YMAVYNGHLKVVREL 534
MPSTLSKASGS DPTIATT IDR CGDTNQTPLMVASVIGS RVVRDLLRQGASVSVADSDG TALHH+VYH HLAVSKDLIEAGADLEAR GG DTPLHV ATKGFCQGM +L+D SRLDDGATPLF AA DGRLEAVRVLLRANANPLLSA GSL YMAVYN L R L
Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGG-KDTPLHVAATKGFCQGMKLLMD------SRLDDGATPLFLAASDGRLEAVRVLLRANANPLLSACGSLPLYMAVYNRPLVRNRSL 173
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 253 bits (647), Expect = 2.560e-79 Identity = 143/218 (65.60%), Postives = 150/218 (68.81%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGSLYM--AVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
MPSTLSKASGS + +ATTDIDRRCGDTN TPLMVASVIGS RVV+DLLRQGASVSVADSDGYTALHH+VYH+HLAVS LIEAGADLEARPG LRANANPLLSA GSL + AVYNGHLKVV ELVHWYGTDRCT+DGG LALATAASRKHVDIVTFLCDAGV
Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 240 bits (612), Expect = 5.890e-71 Identity = 135/210 (64.29%), Postives = 140/210 (66.67%), Query Frame = 1
Query: 25 SGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGSLYMAVYNGHLKVVR--ELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
SGS + IATTDIDRRCGDTNQTPLMVASVIGS RVVRDLLRQGASVS+ADSDGY ALHHAVYHKHLAVSKDLIEAGADL+ARPGG+ DTPLHV ATKGFCQ M NPLLSAD ELV+WYGTD CTSDGGALALATAASR VDIVTFLCDAGV
Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGI-DTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 233 bits (593), Expect = 4.700e-68 Identity = 137/218 (62.84%), Postives = 140/218 (64.22%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGSLY--MAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
MPSTLSKASGSADPTIATTDIDRRCG TNQTPLMVASVIGS RVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK ANANPLLSA GSL MAVY+GHL+VVRELVHWYGTDRCTSDGGALALATAASRKHVDIV FLC+AGV
Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 192 bits (488), Expect = 2.330e-55 Identity = 121/219 (55.25%), Postives = 122/219 (55.71%), Query Frame = 1
Query: 1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGSL---YMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIG RVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK LSA GSL M RELV+WYG DRCTSDGGALAL TAASRKHVDIVTFL DAGV
Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 187 bits (474), Expect = 7.080e-54 Identity = 107/208 (51.44%), Postives = 138/208 (66.35%), Query Frame = 1
Query: 55 TDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVY--------DTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGS--LYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
T+IDRRC + T LM A+ G LR+VR LLR GA VSV+ DG+TALH A+ ++LAV+K LI+AGA++EA+ V TPLH+ A +GFC+GMV LI+AGANVDSR+ DG+T ++ AA G LEAV +L + ANPLL + L +A + GHL VV+ELV +G D C +G AL TAA H I+TFL DAGV
Sbjct: 42 TEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGV 249
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 150 bits (379), Expect = 5.070e-40 Identity = 99/191 (51.83%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 103 VASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPG-----GVYDTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSA-DGS---LYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
VAS +G LRVVR LLR GA VS AD+DG TALH ++ +KHLAVSK L++AGADLEAR GV TPLHV A KGF +GMV+LI AG V+ + A ANP+L+A DG L +A NG L VVREL +G D C+ DGGA AL AAS+ VDIVTFL D GV
Sbjct: 37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG-------------------------VKGFVGAKANPILAAYDGESLPLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGV 202
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 149 bits (375), Expect = 2.500e-39 Identity = 88/208 (42.31%), Postives = 117/208 (56.25%), Query Frame = 1
Query: 55 TDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVY--------DTPLHVTATKGFCQGMVVLIDAGANVDSRLDDGATPLFEAAKDGRLEAVRVLLRANANPLLSADGS--LYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 648
T+IDRRC + T LM A+ G LR+VR LLR GA VSV+ DG+ + ++ TPLH+ +GFC GMV LIDAGANVDSR+ +G+T ++ AA G L+AV++LL+ ANP+L + L +A + GHL VV+ELV +G D C+ +G AL TAA H I+TFL DAGV
Sbjct: 29 TEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEVVQGQTPLHLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGV 236
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 124 bits (311), Expect = 3.880e-32 Identity = 77/129 (59.69%), Postives = 92/129 (71.32%), Query Frame = 1
Query: 1 MPSTLSK-----ASGSADPTIA-----TTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAG 357
MPSTLSK ASGS + T+A + +ID GD +TPLM AS +G LRVVR LLR GA VSVAD+DG TALH ++ +KHLAVSK L++AGA +EAR GV TPLHV A KGF +GMV+LI AG
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR--GVDGTPLHVAAAKGFHKGMVMLIHAG 127
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 121 bits (303), Expect = 6.280e-31 Identity = 76/130 (58.46%), Postives = 90/130 (69.23%), Query Frame = 1
Query: 1 MPSTLSK-----ASGSADPTIA-----TTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGGVYDTPLHVTATKGFCQGMVVLIDAGA 360
MPSTLSK ASGS + T+A + DID GD +TPLM AS +G LRVVR LLR GA VSVAD+DG TALH ++ KHLAVS+ L++AGA +EAR GV TPLHV A KGF +GMV+LI A
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEAR--GVDGTPLHVAAAKGFHKGMVMLIHVDA 128 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11966.1249.1 >prot_E-siliculosus-1a_F_contig11966.1249.1 ID=prot_E-siliculosus-1a_F_contig11966.1249.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1249.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=216bp MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSLRVVRDLLRback to top mRNA from alignment at E-siliculosus-1a_F_contig11966:999..1646- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11966.1249.1 ID=mRNA_E-siliculosus-1a_F_contig11966.1249.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1249.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11966:999..1646- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11966:999..1646- >mRNA_E-siliculosus-1a_F_contig11966.1249.1 ID=mRNA_E-siliculosus-1a_F_contig11966.1249.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1249.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11966:999..1646- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |