mRNA_E-siliculosus-1a_F_contig11966.1248.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11966.1248.1
Unique NamemRNA_E-siliculosus-1a_F_contig11966.1248.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-17
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAGV 123
            MLPLLK RAAKPRVLLAAMSRYNNK DG FLGYLPEKNAGV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 7.810e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAGV 123
            MLPLLKRRAAKPRVLLAAMSRYN K DG FLGYLP+KNAGV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.440e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAGV 123
            M+PLLKRRAAKPRVLLAA+SRYN K DGAFLGYLPEK+ GV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.150e-12
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAGV 123
            M+PLLKRRAA  RVLLAAMSRYNNK DGAFLGYLPEKN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.010e-12
Identity = 38/52 (73.08%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGY-----------LPEKNAGV 123
            MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG            LP KNAG 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.910e-10
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAG 120
            MLP LKRRA KPRV LA +SRYNNK DG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.840e-9
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKN 114
            LP LKRRA KP VLLAA+SRYNNK DG FLGY P+KN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11966.1248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJ25_ECTSI1.650e-1792.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1W5_9PHAE7.810e-1590.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5L0_9PHAE9.440e-1485.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE2.150e-1285.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE4.010e-1273.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE5.910e-1075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI1.840e-978.38EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11966contigE-siliculosus-1a_F_contig11966:253..479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size126
Model size126
Exons2
Ec32 orthologEc-02_004460.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.KLT
EggNOG OGsCOG0515@1,KOG0192@2759
EggNOG free text desc.protein kinase activity
Seed eggNOG ortholog2880.D7G2C8
Seed ortholog evalue2.2e-07
Seed ortholog score60.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.3711224-CDS-E-siliculosus-1a_F_contig11966:252..3161622927714.3711224-CDS-E-siliculosus-1a_F_contig11966:252..316Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11966 253..316 -
1696318650.7310107-CDS-E-siliculosus-1a_F_contig11966:252..3161696318650.7310107-CDS-E-siliculosus-1a_F_contig11966:252..316Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11966 253..316 -
1622927714.385756-CDS-E-siliculosus-1a_F_contig11966:417..4791622927714.385756-CDS-E-siliculosus-1a_F_contig11966:417..479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11966 418..479 -
1696318650.7417495-CDS-E-siliculosus-1a_F_contig11966:417..4791696318650.7417495-CDS-E-siliculosus-1a_F_contig11966:417..479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11966 418..479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11966.1248.1prot_E-siliculosus-1a_F_contig11966.1248.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11966 253..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11966.1248.1

>prot_E-siliculosus-1a_F_contig11966.1248.1 ID=prot_E-siliculosus-1a_F_contig11966.1248.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1248.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=42bp
MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGYLPEKNAGV*
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mRNA from alignment at E-siliculosus-1a_F_contig11966:253..479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11966.1248.1 ID=mRNA_E-siliculosus-1a_F_contig11966.1248.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1248.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=227bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11966:253..479- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGGTGCGTGGTGTTGTTTGGTTCTTCGGTGTTTACTGTGG
ACAATACACAATTTGAAGGAAGTTGGCTGAAATGTTTTTACCCGCCCCGT
GTCTTTTCGACAGGTACAACAACAAGCACGACGGAGCTTTCCTCGGGTAC
TTGCCGGAAAAGAACGCGGGAGTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11966:253..479-

>mRNA_E-siliculosus-1a_F_contig11966.1248.1 ID=mRNA_E-siliculosus-1a_F_contig11966.1248.1|Name=mRNA_E-siliculosus-1a_F_contig11966.1248.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11966:253..479- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCG
TGTGCTCTTGGCAGCCATGTCTAGGTACAACAACAAGCACGACGGAGCTT
TCCTCGGGTACTTGCCGGAAAAGAACGCGGGAGTCTAAGTACAACAACAA
GCACGACGGAGCTTTCCTCGGGTACTTGCCGGAAAAGAACGCGGGAGTCT
AA
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