mRNA_E-siliculosus-1a_F_contig1196.1247.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1247.1 vs. uniprot
Match: D8LSU4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU4_ECTSI) HSP 1 Score: 1758 bits (4552), Expect = 0.000e+0 Identity = 1189/1615 (73.62%), Postives = 1204/1615 (74.55%), Query Frame = 1
Query: 4 HNTGAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTTTTERHARNARRWLSDPRIWRCFVRSLRGGTTQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDWAFVAVLTLCGGVIVTAGGRGGRAG-GHSSGSMTSIDAAVLDELRPRRADGRLLAAAGPAATXXXXXXXXXXXASKRWGGGGAVMKMSLDAYVTFLDEVLRGHEAVCQALPLAGDGAASGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFQALPPEGSTTASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAEAAXXXXXXXXXXXXXXGEG-----------------------------------------------------------------------------GGRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPASQMFRLWSVLNWTLLGSLPSAPPXXXXXXXXSDGTVVHPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRV-ANPTKEEAAGAGAAAEEFLRAFDSLLGLNHSILHDDLRPVLRMTFEWAATAETAESXXAAGTVRGGDGGNSG-----PPAVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRRDECVAALGRAFRRLPEGQIASMWDVFAAHLREGWNQGAGXXXXXXXXRNDLLAREMDAELFVVFVRNLHVTSSVASAVGALCLSLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGGERAESEQHGALGDGSGSGGGSGCVPMSEMMLSFRPALDAHGWLLDLDTRCRFWSAVLESSSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPDGDGADVSLPRIIAAATAALETSNSSDSSRSLEAGTGAHDEEVGVRSRLEKTLQQVAVHRVQQIYARLNGVAALESSGTTAAAERRPAPPSSGAEGVDGDEEGELEEAAPGGAAREEG---GEGKLEEEARGLVAYACGACRGSGGGGYGPVAWGDEDGGGRGGGASWSMMMPYLPVWVGFAEEGQVALFLEALLSRCAADILAGLGEEESPPLRLLSDASFYEMEAVAKSAPAVILTRVFHAVRRAVGAGRGTGDKKENGAARLPPGFPAVDTIVAAVQALAAAVCTTANEKGKGRGGAAEGSSGGSPAEVTGXXEAEREGRDKXXXXXXXXXXXXXXXXXXTERFPSGFVDEEALAAMLVASDALDAVLTRSLLSRSGSGGDTAGGGRGKKPADGDEXXXXXXXDVPPSRRGLVSLALPAGAGPREESLVEAVAALRGLSLRLGRSLPPGSPLLERLPQGDALLRAIGPAAARGECGGESSRAHLLRASACLLPFLAERCVLRGDTKTALKAIVGLGLIKPRPASGGGEAEKRRRKRGHHPRKDAPLAR 4587
H GAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTTT+ERHARNAR WLSDPRIWRCFVRSLRGG TQAAEPSTHLPQAASLGVLRAAIFAVRAGAPG+ AAA GAGDWAFVAVLTLCGGVI GHSSGSMTSIDAAVLDELRPRRADGRLLA AGPA ASKRWGGGGAVMKMSLDA+VTFLDEVLRGHEAVCQAL LAGDGA SGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFQALPPEGS TASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAEA XXXXXX GEG GRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPASQMFRLWSVLN TLLG LPS PP XXXXXXX DGTVV PRLLLLPFLRSSNSMLR LAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADSC RV PTKE+AAGAGAAAEEFLRAF SLLGLNHSILHDDLRPVLRMTFEWAATAET E XX PPAVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLR DEC AALGRAFRRLPEGQIASMWDVFAAHLREGWNQGAGXXXXXX RNDLLAREMDAELFVVFVRNLHVTSSVASAVGALCL LAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXX GERAESEQHGA+GDGSGSGG SG VPMS+MMLSFRPALD HGWLLDLDTRCRFWSAVL+SS PA XXXXXXX +PPDGDGADVSLPRIIAAATAALETSNSS SS SLEAG GAHDEEVGVRSRLEKTLQQVAVHRVQQIYARLNGVAALESSGT G+ EARGLVAYACGACRGSGG G GPVAWGDEDGGGRGGGASWSMMMPYLPVW+GFAEE QVALFLEALLSRCAADILAG GEEESPPLRLLSDASFYEMEAVAKSAPAVILTRVFHAVR AVG GRGTGDKKE+GAARLPPGFPAVDTIVAAVQALA XX XXXXXXXXXXXXXXXXX TERFP+GF+DEEALAAMLVASDALDAVL R LLSRSGSGG AGGG+GKKP DGD DVPP R GL SLA PAGAGPREESLVEAVAALRGLSLRLGRSLPP SPLLE LPQGDALLRAIGPAA GE GGESSRAHLLRASACLLPFLAERCVLRGDTKTALKAIVGLGLIKPRPAS GGEAEKRRRKRGHHPR+DAP R
Sbjct: 52 HPDGAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTTTSERHARNARGWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGAAAAAGAAARAWESCSAPPQAA----------------GAGDWAFVAVLTLCGGVIXXXXXXXXXXXXGHSSGSMTSIDAAVLDELRPRRADGRLLAVAGPAPATV---------ASKRWGGGGAVMKMSLDAFVTFLDEVLRGHEAVCQALLLAGDGAGSGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFQALPPEGS-TASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAEAXXXXXXXARTGSSPQGEGVAPTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKFKKPRIRVCYQQQLLDEMAALAAGSRGDGEGEGRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----SPASQMFRLWSVLNSTLLGYLPSVPPSXXXXXXXXDGTVVLPRLLLLPFLRSSNSMLRFLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADSCYGRGGSRAGGDNSTDGGAPGSTAAAMAVSGDGARRREDTPDAPAAAARVLVKPTKEQAAGAGAAAEEFLRAFGSLLGLNHSILHDDLRPVLRMTFEWAATAETEEXXXXXXXXXXXXXXXXXXXXXXPPAVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRMDECAAALGRAFRRLPEGQIASMWDVFAAHLREGWNQGAGXXXXXX--RNDLLAREMDAELFVVFVRNLHVTSSVASAVGALCLRLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXX---GERAESEQHGAIGDGSGSGGSSGGVPMSQMMLSFRPALDVHGWLLDLDTRCRFWSAVLDSSLPATAAAXXXXXXXAAIPQDDGDTLVEEGGDRDETTGATTTPAPCASLL-VPPDGDGADVSLPRIIAAATAALETSNSSGSS-SLEAGMGAHDEEVGVRSRLEKTLQQVAVHRVQQIYARLNGVAALESSGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKXXXXXEARGLVAYACGACRGSGGDGRGPVAWGDEDGGGRGGGASWSMMMPYLPVWIGFAEEEQVALFLEALLSRCAADILAGRGEEESPPLRLLSDASFYEMEAVAKSAPAVILTRVFHAVRCAVGGGRGTGDKKEDGAARLPPGFPAVDTIVAAVQALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXMTERFPAGFLDEEALAAMLVASDALDAVLARCLLSRSGSGGGIAGGGKGKKPEDGDAAEILLDDDVPPFRGGLGSLASPAGAGPREESLVEAVAALRGLSLRLGRSLPPESPLLEGLPQGDALLRAIGPAAG-GERGGESSRAHLLRASACLLPFLAERCVLRGDTKTALKAIVGLGLIKPRPASEGGEAEKRRRKRGHHPRQDAPPGR 1627
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1247.1 vs. uniprot
Match: A0A6H5JIT9_9PHAE (Urb2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIT9_9PHAE) HSP 1 Score: 1719 bits (4453), Expect = 0.000e+0 Identity = 1182/1746 (67.70%), Postives = 1199/1746 (68.67%), Query Frame = 1
Query: 4 HNTGAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTTTTERHARNARRWLSDPRIWRCFVRSLRGGTTQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGDWAFVAVLTLCGGVIVTAGGRGGRAGGHSSGSMTSIDAAVLDELRPRRADGRLLAAAGPAATXXXXXXXXXXXASKRWGGGGAVMKMSLDAYVTFLDEVLRGHEAVCQALPLAGDGAASGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFQALPPEGSTTASASSPLKTAAKAVACDALFHEEHLEGYREAFTAAEAAXXXXXXXXXXXXXX----------------------------------------------------------------------------GEGGGRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASPASQMFRLWSVLNWTLLGSLPSAPPXXXXXXXXSDGTVVHPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFDQLRSFSSSLIRLADSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRV-ANPTKEEAAGAGAAAEEFLRAFDSLLGLNHSILHDDLRPVLRMTFEWAATAETAESXXAA-----------------------------------------------------------------------------------------------------------------------------------------GTVRGGDGGNSGPPAVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRRDECVAALGRAFRRLPEGQIASMWDVFAAHLREGWNQGAGXXXXXXXX--RNDLLAREMDAELFVVFVRNLHVTSSVASAVGALCLSLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXGGERAESEQHGALGDGSGSGGGSGCVPMSEMMLSFRPALDAHGWLLDLDTRCRFWSAVLESSSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPPDGDGADVSLPRIIAAATAALETSNSSDSSR--SLEAGTGAHDEEVGVRSRLEKTLQQVAVHRVQQIYARLNGVAALESSGTTAAAERRPAPPSSGAEGVDGDEEGELEEAAPGGAAREEGGEGKLEEEARGLVAYACGACRGSGGGGYGPVAWGDEDGGGRGGGASWSMMMPYLPVWVGFAEEGQV-----------------------ALFLEALLSRCAADILAGLGEEESPPLRLLSDASFYEMEAVAKSAPAVILTRVFHAVRRAVGAGRGTGDKKENGAARLPPGFPAVDTIVAAVQALAAAVCTTANEKGKGRGGAAEGSSGGSPAEVTGXXEAEREGRDKXXXXXXXXXXXXXXXXXXTERFPSGFVDEEALAAMLVASDALDAVLTRSLLSRSGSGGDTAGGGRGKKPADGDEXXXXXXXDVPPSRRGLVSLALPAGAGPREESLVEAVAALRGLSLRLGRSLPPGSPLLERLPQGDALLRAIGPAAARGECGGESSRAHLLRASACLLPFLAERCVLRGDTKTALKAIVGLGLIKPRPASG 4518
H GA TGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAAS NVSTTTT+ERHARNARRWLSDPRIWRCFVRSLRGG TQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAA XXXXXXXXG DWAFVAVLTLCGGV SSGSMTSIDAAVLDELRPRRADG +LA AGPAA ASKRWGGGGAVMKMSLDAY TFLDEVLRGHEAVC ALPLAGDGA SGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLF+ALPPE STTASASSPLKTAAKAVA DALFHEEHLEGYREAFTAAE A GEGGGRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAA XXXXXXXXXXXXXXXXXX SPASQMFRLWSVL+ TLLGSLPSAP SDGTVV PRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEF QLRSFSSSLIRLA+SCXXXXXXXXXXXXXXXXX RV PTKEE GAGAAAEEFLRAF SLLGLNHSILHDDLR VLRMTFEWAATAETAES AA GTVRGGDGG+ GP VLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRRDEC AALGRAFRRLPEGQIA MWDVFAAHLREGWNQGAG XXXXXX RNDLLAREMDAELFVVFVRNLHVTSSVASAVGALC SLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXX G ERAESEQHGALGDGSGSGG VPMSEMMLSFRPALD HGWLLDLDTRCRFW AVL+SSS A MPPDGD AD SLPRI SLEAGTGAHDEEVGVRSRLEKTLQQVAVHRVQQIYA LNGVAALESSGTT AAERRPA P SGAEG+D D+EG+LE E KLE+EARGLVAYACGACRGSGGGG+GPV WGDEDG GRGGGA WSMMMPYLPVWVGFAEE QV ALFLEALLSRCAADIL G GEEESPPLRLLSDASFYEMEAVAKSAPAVIL RVFHAVRRAVG RGTGDKKE+G+ARLPPGFPAV TIVAAVQALA A TTANEKGKGRGGAAEGS SPAEVTG EAER+GRDKXXXXXXXXXXXXXXXX TERFPSGF+DEEA+AAMLVASDALD VL RSL SR GSGG XXXX VP SR GL SLA PA AGPREESLVEAVAALR LSLRLGRSLPP SPLLERLPQGDALLRAI PAAA GE GGESSRAHLLRASA LLPFLAERCVLRGDTKTALKAIVGLGLIKPRPASG
Sbjct: 82 HPDGAATGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASTNVSTTTTSERHARNARRWLSDPRIWRCFVRSLRGGATQAAEPSTHLPQAASLGVLRAAIFAVRAGAPGSLAAAGAAARAGDSCSASPQAAEPNNDGVAXXXXXXXXG--DWAFVAVLTLCGGVXXXXXXXXXXXXXQSSGSMTSIDAAVLDELRPRRADGMVLATAGPAAPAPALATV----ASKRWGGGGAVMKMSLDAYATFLDEVLRGHEAVCLALPLAGDGAGSGGRSSVGGKEAAAVATAGGGALPSLAEGALTELLRFQVVLQAQQTSPRKVFTTFCSKLMGSLFRALPPEISTTASASSPLKTAAKAVAFDALFHEEHLEGYREAFTAAEEAVAAAVARTGSSPQGXXXXXXXXXXDGKNISEPDQSXXXXXXXXXXXXXXXXXXXXXXXXXXKFKKPRSRVCYQQQLLDEMAALAAGSRADGEGGGRSRLGAVAGAPILLEGFILRLGKVQRGAVDIHEASGAATAAVAVGGKRXXXXXXXXXXXXXXXXXX------SPASQMFRLWSVLHSTLLGSLPSAPSSSPPPAQPSDGTVVLPRLLLLPFLRSSNSMLRLLAEHDVYRINEDWGGLEFGQLRSFSSSLIRLAESCXXXXXXXXXXXXXXXXXAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETAESATAAPGTVRGGDGGSGGPTVVLRALAVDLVASLVGTGGGXXNSTDGGAPASTPAAMAVSRDGARRTEDAPDAPAAAARVLVKPTKEEVTGAGAAAEEFLRAFGSLLGLNHSILHDDLRQVLRMTFEWAATAETXXXXXXXPGTVRGGDGGSGGPTVVLRALAVDLVASLVGTYGRLRQMDHLVRALFGAVSDCPQAAAAMLRRDECAAALGRAFRRLPEGQIAPMWDVFAAHLREGWNQGAGCGXXXXXXXXRNDLLAREMDAELFVVFVRNLHVTSSVASAVGALCSSLAEESLRSFGVPLRQAAXXXXXXXXXXXXXXXXXXXXXXXX---GEERAESEQHGALGDGSGSGG----VPMSEMMLSFRPALDVHGWLLDLDTRCRFWFAVLDSSSSATAGAGAAIPQDDGNTLVEEGGDGDKTARATTAPAPPASVL-------MPPDGDEADASLPRIXXXXXXXXXXXXXXXXXXXXSLEAGTGAHDEEVGVRSRLEKTLQQVAVHRVQQIYAHLNGVAALESSGTTGAAERRPASPPSGAEGMDDDQEGKLEXXXXXXXXXXXXXEEKLEDEARGLVAYACGACRGSGGGGHGPVTWGDEDGDGRGGGAGWSMMMPYLPVWVGFAEEEQVGGQPLVPSIDTSNRSGSRPPYLVALFLEALLSRCAADILDGRGEEESPPLRLLSDASFYEMEAVAKSAPAVILARVFHAVRRAVGGARGTGDKKESGSARLPPGFPAVGTIVAAVQALATAATTTANEKGKGRGGAAEGSXSDSPAEVTGGGEAERKGRDKXXXXXXXXXXXXXXXXM-TERFPSGFLDEEAIAAMLVASDALDTVLARSLSSRCGSGGXXXXXXXXXXXXXXXXXXXXLDDHVPSSRGGLGSLASPASAGPREESLVEAVAALRRLSLRLGRSLPPESPLLERLPQGDALLRAIEPAAASGERGGESSRAHLLRASASLLPFLAERCVLRGDTKTALKAIVGLGLIKPRPASG 1800 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1196.1247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1196.1247.1 >prot_E-siliculosus-1a_F_contig1196.1247.1 ID=prot_E-siliculosus-1a_F_contig1196.1247.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1529bp PHNTGAVTGVTQGVHRAVLDWSTGVIVKLAAALPKHATIAASPNVSTTTTback to top mRNA from alignment at E-siliculosus-1a_F_contig1196:24165..32046- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1196.1247.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1247.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7882bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:24165..32046- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1196:24165..32046- >mRNA_E-siliculosus-1a_F_contig1196.1247.1 ID=mRNA_E-siliculosus-1a_F_contig1196.1247.1|Name=mRNA_E-siliculosus-1a_F_contig1196.1247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=9174bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1196:24165..32046- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |