mRNA_E-siliculosus-1a_F_contig1195.1238.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1195.1238.1
Unique NamemRNA_E-siliculosus-1a_F_contig1195.1238.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1195.1238.1 vs. uniprot
Match: A0A6H5JNP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP0_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.930e-75
Identity = 134/161 (83.23%), Postives = 135/161 (83.85%), Query Frame = 1 
Query:    1 MAVSGAVRALVSALLVAFAVEAFVVPAPAALARDLGRPSNKQQLTPTPNTAAASSRSLTPARMSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW 483
            MAVSGAVRALV ALLVAFAVEAFVVPAPAALAR+LGRPSN QQLTPTPNTAA SSRSLT A                      EMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW
Sbjct:    1 MAVSGAVRALVFALLVAFAVEAFVVPAPAALARNLGRPSNTQQLTPTPNTAATSSRSLTRAXXXXXXXXXXXXXXXXXXXXXPEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW 161
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BLAST of mRNA_E-siliculosus-1a_F_contig1195.1238.1 vs. uniprot
Match: D8LID7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID7_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 5.060e-60
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:  187 MSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQLGWSYDASKPEW 483
            MSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQE+VVNTQKDAVQLGWSYDASKPEW
Sbjct:    1 MSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKVVNTQKDAVQLGWSYDASKPEW 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNP0_9PHAE1.930e-7583.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LID7_ECTSI5.060e-6098.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1195contigE-siliculosus-1a_F_contig1195:10723..12466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size486
Model size486
Exons3
Ec32 orthologEc-18_004050.1
Ec32 ortholog descriptionProtein of unknown function DUF2997
Hectar predicted targeting categorychloroplast
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1195.1238.1prot_E-siliculosus-1a_F_contig1195.1238.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1195 10723..12466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.3820722-CDS-E-siliculosus-1a_F_contig1195:10722..107731622927712.3820722-CDS-E-siliculosus-1a_F_contig1195:10722..10773Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 10723..10773 -
1696318650.0214663-CDS-E-siliculosus-1a_F_contig1195:10722..107731696318650.0214663-CDS-E-siliculosus-1a_F_contig1195:10722..10773Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 10723..10773 -
1622927712.3989704-CDS-E-siliculosus-1a_F_contig1195:11351..114621622927712.3989704-CDS-E-siliculosus-1a_F_contig1195:11351..11462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 11352..11462 -
1696318650.0295339-CDS-E-siliculosus-1a_F_contig1195:11351..114621696318650.0295339-CDS-E-siliculosus-1a_F_contig1195:11351..11462Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 11352..11462 -
1622927712.411044-CDS-E-siliculosus-1a_F_contig1195:12142..124661622927712.411044-CDS-E-siliculosus-1a_F_contig1195:12142..12466Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 12143..12466 -
1696318650.0425773-CDS-E-siliculosus-1a_F_contig1195:12142..124661696318650.0425773-CDS-E-siliculosus-1a_F_contig1195:12142..12466Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 12143..12466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1195.1238.1

>prot_E-siliculosus-1a_F_contig1195.1238.1 ID=prot_E-siliculosus-1a_F_contig1195.1238.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp
MAVSGAVRALVSALLVAFAVEAFVVPAPAALARDLGRPSNKQQLTPTPNT
AAASSRSLTPARMSTYEQSSPEPSASGEMSSSSEMELQELIVDFTDDGRI
LLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERVVNTQKDAVQL
GWSYDASKPEW*
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mRNA from alignment at E-siliculosus-1a_F_contig1195:10723..12466-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1195.1238.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1238.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1744bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:10723..12466- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCGTTTCCGGTGCCGTCCGAGCCCTTGTCTCTGCATTACTCGTGGC
GTTCGCTGTCGAAGCGTTCGTTGTACCGGCTCCGGCGGCGCTGGCACGAG
ACCTGGGTAGACCGAGCAACAAGCAGCAGCTGACACCAACACCGAACACT
GCCGCAGCATCATCACGTTCGCTCACCCCAGCTCGCATGTCAACGTACGA
GCAGTCGTCGCCGGAGCCGTCCGCCAGCGGAGAGATGAGCAGCTCTTCTG
AGATGGAGCTGCAAGAGCTGATTGTGGATTTCACGGACGATGGTCGGATT
TTGCTTGAGGTCAAGGGTGTCAAGGTGGGTTTCGAATATTTGAATTGAAG
AAGAGATGGCTGACCGATTACACGTCATTCGGTCAACGCAGCCGAAGAGT
CACTGCAACACAGAGACCTCCATTCTACGTACGAACAGAGATGGGGTGAT
GTGATGGGTAGCCAACGGGGACCAAGCACCACGTACCGGAGAATAGACAG
GAAGAACTTACATACTTTTTGGTTTGGCCCCAGATATCCTACATACACAC
ACCGGAGTTACAACACCGCCCGTGCTGGACAAGGGATTTTTTTTTTTTTC
GGCCAATATGGCGGTACATTTACATTGTTCCGGTCGTTTCTCTGTACACG
ATATTTTTTGTTTCCGAACAACCAGCACGTTACTGCTTTTCGTATGTGCT
AAAGTACATCGCGACGCCAGCGGGAGGTAGGACTAAAGGATGCAAAATTT
CTGGGTCTTTGAGTGAAATACCAACACCTCTGTCCTGAGCAAAAATTGGT
TTATGTTTCAATGTTTGCGGGGGGTTTTTTGGTCATGTCGAACAGGGTAG
TCTATACTGCATCCACGCAAACGACAGAGACTTGGAGTCGAAGATCTCTT
GACAGCCGGACCCATCGCTCCCCTCACAGCAGTCGTCATTGAACAACCCC
ACGGACACGTTGCACCTCGCCATACACCCATTCATGCTTTATCACGTGTC
ACAGGGTAGCGAATGCAGGGTGATCACGGAGGATCTCATCAAAGCTCTCG
GGGACGTGATCACGACCGAGAACACCGAGGAGTACTTCCAAGAGAGGGTC
GTCAACACGCAGAAGGTGAAGCGTCCGGACCATAGCTTACCTTCGTGTGA
CCTTAAGCCTCACAGCTGACGACACACCGGGCTTGTGCGTGTTGTCAAGC
AAGAATTGAAGTTTCTCAACTTTAACTACTCAACTTTCGTGTGAAATTCA
TTGAGTGAGACTCAAGTTGGGATGACACGGGCGAAAATCTCGTGTTTGGC
GGCCTCGCTGTAGCTGTTCGTGCTCAACTGATTGGCTGATGGGCGTCCGT
GCCCAGGATGGAAGCGTAGAGTTCCAAGAGCACGTTAGCTCCGTGCAGTT
ACCTAATAGCCCTCGTTTCGTGGATAACGGCATGCTACAGCGGCGATTCA
ACCTCCGTCGCTCGGGCACACGCGATGGGTTTGATGTTGTGTTGTTGCGT
CGGAAATGAATCTCGAAAGTCGTAGGGCCTACACAACCGTCAGTACCGCG
GTTATATTGTCGTTTGAACGCCTTCTAACAAATCCTTCAGCAAATCGTTA
CTTTTGGAAGCACACACGTGGCTGGATTCGTCACGTGCAGTCTCAGCTGA
AGTACCATCCCGCACCCCGCCTTTCCGCCCTTCCCGTGAGCAGGACGCGG
TTCAGCTCGGATGGTCTTACGACGCCAGCAAGCCTGAGTGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1195:10723..12466-

>mRNA_E-siliculosus-1a_F_contig1195.1238.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1238.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:10723..12466- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCGTTTCCGGTGCCGTCCGAGCCCTTGTCTCTGCATTACTCGTGGC
GTTCGCTGTCGAAGCGTTCGTTGTACCGGCTCCGGCGGCGCTGGCACGAG
ACCTGGGTAGACCGAGCAACAAGCAGCAGCTGACACCAACACCGAACACT
GCCGCAGCATCATCACGTTCGCTCACCCCAGCTCGCATGTCAACGTACGA
GCAGTCGTCGCCGGAGCCGTCCGCCAGCGGAGAGATGAGCAGCTCTTCTG
AGATGGAGCTGCAAGAGCTGATTGTGGATTTCACGGACGATGGTCGGATT
TTGCTTGAGGTCAAGGGTGTCAAGATGGCCGTTTCCGGTGCCGTCCGAGC
CCTTGTCTCTGCATTACTCGTGGCGTTCGCTGTCGAAGCGTTCGTTGTAC
CGGCTCCGGCGGCGCTGGCACGAGACCTGGGTAGACCGAGCAACAAGCAG
CAGCTGACACCAACACCGAACACTGCCGCAGCATCATCACGTTCGCTCAC
CCCAGCTCGCATGTCAACGTACGAGCAGTCGTCGCCGGAGCCGTCCGCCA
GCGGAGAGATGAGCAGCTCTTCTGAGATGGAGCTGCAAGAGCTGATTGTG
GATTTCACGGACGATGGTCGGATTTTGCTTGAGGTCAAGGGTGTCAAGGG
TAGCGAATGCAGGGTGATCACGGAGGATCTCATCAAAGCTCTCGGGGACG
TGATCACGACCGAGAACACCGAGGAGTACTTCCAAGAGAGGGTCGTCAAC
ACGCAGAAGGGTAGCGAATGCAGGGTGATCACGGAGGATCTCATCAAAGC
TCTCGGGGACGTGATCACGACCGAGAACACCGAGGAGTACTTCCAAGAGA
GGGTCGTCAACACGCAGAAGGACGCGGTTCAGCTCGGATGGTCTTACGAC
GCCAGCAAGCCTGAGTGGTGAGACGCGGTTCAGCTCGGATGGTCTTACGA
CGCCAGCAAGCCTGAGTGGTGA
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