mRNA_E-siliculosus-1a_F_contig1195.1236.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1195.1236.1
Unique NamemRNA_E-siliculosus-1a_F_contig1195.1236.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: D8LID9_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID9_ECTSI)

HSP 1 Score: 525 bits (1351), Expect = 3.210e-188
Identity = 261/263 (99.24%), Postives = 263/263 (100.00%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA 789
            MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPH+FQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFE+FENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEDFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKAPAPDAGMA 263          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A836CE23_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE23_9STRA)

HSP 1 Score: 381 bits (978), Expect = 2.400e-131
Identity = 188/266 (70.68%), Postives = 222/266 (83.46%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEEKA--PAP-DAGMA 789
            MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQG A LGL S +H VL ALKR+PNE+ + Q+KI K+D +MG++IAGLTADAR LAKYMRTE LNHKYVYGT +QA+RL  DLADMHQR TQSYVRRPYGVGML+AAHD TGPH+ +T PSGNYFEYVAMAIGARSQSAKTYLEKH+++F    +D+L+KH LKALSGC+TGDKELD   +++AIVG  + FE ++G +LQ ++DAIE+EG+AA P   G+ E  A  PAP D G+A
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGSACLGLTSKTHAVLCALKRSPNELGSYQEKIMKIDDHMGISIAGLTADARMLAKYMRTEALNHKYVYGTQLQANRLATDLADMHQRCTQSYVRRPYGVGMLIAAHDATGPHLMETSPSGNYFEYVAMAIGARSQSAKTYLEKHYQDFPAASVDDLIKHGLKALSGCITGDKELDVASVSVAIVGAGQAFEEVQGARLQAFLDAIEVEGDAAAPAPAGEPEAPADVPAPMDEGIA 266          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A4D9CTI6_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTI6_9STRA)

HSP 1 Score: 354 bits (908), Expect = 1.110e-120
Identity = 173/241 (71.78%), Postives = 208/241 (86.31%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGN 723
            MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG  +LGLRS   VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QASRLVLD+AD HQR TQSYVRRPYGVG+L+A++DQTGPH++QT PSG Y+EY+A AIG+R+QS KTYLEK+  EFE+   DEL+KHALKALSG   GDKEL  +  ++A+VGKD   E +EGE LQ Y+DAIE+EG+
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVLDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGD 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: W7TFX4_9STRA (Proteasome subunit alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX4_9STRA)

HSP 1 Score: 353 bits (905), Expect = 8.110e-119
Identity = 172/241 (71.37%), Postives = 208/241 (86.31%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGN 723
            MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG  +LGLRS   VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QASRLV+D+AD HQR TQSYVRRPYGVG+L+A++DQTGPH++QT PSG Y+EY+A AIG+R+QS KTYLEK+  EFE+   DEL+KHALKALSG   GDKEL  +  ++A+VGKD   E +EGE LQ Y+DAIE+EG+
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVVDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGD 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A7S3GRX0_9STRA (Proteasome subunit alpha type n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRX0_9STRA)

HSP 1 Score: 348 bits (892), Expect = 1.980e-118
Identity = 166/248 (66.94%), Postives = 204/248 (82.26%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDE 744
            MFRNQYDTDVTVWSPQGRLHQVEYA EAV QG A LGLRS +HVVLAALKR+PNE++A QKKI K+D +MG+A++GLTAD RSL KYMRTE LN+KYVYGT +Q SRLVLDLADMHQ+ TQSYVRRPYGVG+LV  +DQTGPH++ T PSGNY+EY AMAIG+RSQ+++TYLEK FE F N  LD+L+KHALKAL+  + GD ELD+   ++++VG ++ F+ +EG  LQ Y+DA+ +EG      +E
Sbjct:    1 MFRNQYDTDVTVWSPQGRLHQVEYATEAVNQGTACLGLRSKTHVVLAALKRSPNELAANQKKIHKIDDHMGIAMSGLTADGRSLVKYMRTEALNNKYVYGTPIQGSRLVLDLADMHQKCTQSYVRRPYGVGLLVGTYDQTGPHLYLTEPSGNYYEYYAMAIGSRSQTSRTYLEKEFESFGNASLDDLIKHALKALAASLAGDSELDSKNASISMVGANQAFQIIEGPALQKYLDAVAVEGEQEMEQEE 248          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A7S2XQH4_9STRA (Proteasome subunit alpha type n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQH4_9STRA)

HSP 1 Score: 344 bits (883), Expect = 7.280e-117
Identity = 164/241 (68.05%), Postives = 203/241 (84.23%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQ-TGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
            MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A +G+RS SH VL ALKR+ +E+S+ QKKI ++D ++G+ IAGLTADARSLAK+M  ECLNHKYVYGT M +SRLV DLAD HQRTTQ+YVRRPYGVG+LVA++D+ TGPH++QTCPSGN +EY A AIGARSQS +TYLEKH+E FE    D+L+ HAL+AL+GCVTGD EL  +  ++A+VGK + F  +EG++LQPY+D +ELEG
Sbjct:    1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACVGMRSSSHTVLGALKRSVSELSSHQKKIIEIDDHIGIGIAGLTADARSLAKWMMNECLNHKYVYGTPMPSSRLVTDLADRHQRTTQTYVRRPYGVGLLVASYDEKTGPHLYQTCPSGNIYEYYASAIGARSQSGRTYLEKHYESFEEASKDDLIMHALRALAGCVTGDGELTRDNGSIAVVGKGESFILIEGDELQPYLDRLELEG 241          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A067BZB1_SAPPC (Proteasome subunit alpha type n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BZB1_SAPPC)

HSP 1 Score: 342 bits (876), Expect = 4.220e-116
Identity = 162/239 (67.78%), Postives = 199/239 (83.26%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSA-PQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIEL 714
            MFRNQYDTDVTVWSPQG LHQ++YAMEAVKQG A LGLRS +HVVLA +KR   E  A PQKK+F++DS+MG+AIAGLTADARSLA++MRTECLNHK+VYG+ +  +RLV D+AD  Q  TQSYVRRPYGVG+LVA  D+ GPH+FQTCPSGNY+EY A+AIGARSQSA+TYLEKHFE F N   D+L+KHAL+ + GC+ G +EL A+ +T+A+VG D+ F  +EG  LQPY+DA+E+
Sbjct:    1 MFRNQYDTDVTVWSPQGHLHQIDYAMEAVKQGSACLGLRSSTHVVLAGIKRVNAEQLADPQKKLFEIDSHMGMAIAGLTADARSLARFMRTECLNHKFVYGSALPVARLVADVADKKQECTQSYVRRPYGVGLLVAGVDKNGPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFETFPNSSKDDLIKHALQGIRGCLEGSQELSASNVTIAVVGADQKFILIEGADLQPYIDAVEV 239          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A1V9Z6U9_9STRA (Proteasome subunit alpha type n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6U9_9STRA)

HSP 1 Score: 341 bits (874), Expect = 8.490e-116
Identity = 158/239 (66.11%), Postives = 201/239 (84.10%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRA-PNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIEL 714
            MFRNQYDTDVTVWSPQG LHQ++YAMEAVKQG A LGLRS ++VVLA + R    E++ PQKK+F++D++MG+AIAGL+ADARSLA++MRTECLNHK+VYG+ M  +RLV D+AD  Q  TQSYVRRPYGVG+LVA  D+TGPH+FQTCPSGNY+EY A+AIGARSQSA+TYLEKHF+ F NCD +EL+KHAL+ + GC+ GD+EL    + +A+VG ++ F  +EG +LQPY+DA+E+
Sbjct:    1 MFRNQYDTDVTVWSPQGHLHQIDYAMEAVKQGSACLGLRSSNYVVLAGIMRVNAEELADPQKKLFEVDTHMGIAIAGLSADARSLARFMRTECLNHKFVYGSAMSVARLVADVADKKQECTQSYVRRPYGVGLLVAGVDKTGPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFQTFANCDKEELIKHALEGIRGCLEGDQELSIANIAVAVVGLNEAFHVIEGTKLQPYIDAVEV 239          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A6U3ZK57_9STRA (Proteasome subunit alpha type n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZK57_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.380e-115
Identity = 163/240 (67.92%), Postives = 197/240 (82.08%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
            MFRN YDTDVTVWSP+GRL QVEYAME+VKQG A + LRS +H V+ ALKR+ +E+SA Q+KI ++D ++G+ IAGLTADAR+LAK+MR ECLNHKYVYGT + + RLV DLAD HQRTTQSYVRRPYGVG+LVA+ D+ GPHV+QTCPSGN +E  A AIGARSQS +TYLEKH E FE C  D+L+ HALKAL GCV+GD EL     ++AIVGKD+ F  +EGE+LQPY+D +ELEG
Sbjct:    1 MFRNMYDTDVTVWSPEGRLLQVEYAMESVKQGSACIALRSTTHSVIGALKRSVSELSAHQQKILEIDDHLGIGIAGLTADARTLAKWMRNECLNHKYVYGTALPSGRLVTDLADRHQRTTQSYVRRPYGVGLLVASFDKNGPHVYQTCPSGNVYECYATAIGARSQSGRTYLEKHCESFEECSKDDLIMHALKALVGCVSGDGELTRENGSVAIVGKDQKFTLIEGEELQPYLDRLELEG 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Match: A0A6S9F1R3_9STRA (Proteasome subunit alpha type n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F1R3_9STRA)

HSP 1 Score: 340 bits (872), Expect = 4.070e-115
Identity = 158/240 (65.83%), Postives = 201/240 (83.75%), Query Frame = 1
Query:    1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 720
            MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A LGLRS +H VL ALKR+ +E ++ QKK+ ++D +MG+ IAGLTADAR++AK+MR ECLNHKYVYGT M + RL+ DLAD HQRTTQ+YVRRPYGVG+LVA++D+ GPH++QTCPSGN +EY A AIGARSQS +TYLEKH+E   +   D+L+ HAL+AL+GCV+GD EL  +  ++A+VGKD+ F  +EG++LQPY+D +ELEG
Sbjct:    1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACLGLRSSTHSVLGALKRSVSEHASHQKKLLEIDDHMGIGIAGLTADARTIAKWMRNECLNHKYVYGTPMPSGRLLTDLADKHQRTTQTYVRRPYGVGLLVASYDKNGPHLYQTCPSGNLYEYYASAIGARSQSGRTYLEKHYETLNDASRDDLIMHALRALTGCVSGDVELTKDNGSIAVVGKDEKFTLIEGDELQPYLDRLELEG 240          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LID9_ECTSI3.210e-18899.24Proteasome subunit alpha type n=2 Tax=Ectocarpus T... [more]
A0A836CE23_9STRA2.400e-13170.68Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A4D9CTI6_9STRA1.110e-12071.78Proteasome subunit alpha type n=1 Tax=Nannochlorop... [more]
W7TFX4_9STRA8.110e-11971.37Proteasome subunit alpha n=1 Tax=Nannochloropsis g... [more]
A0A7S3GRX0_9STRA1.980e-11866.94Proteasome subunit alpha type n=1 Tax=Spumella elo... [more]
A0A7S2XQH4_9STRA7.280e-11768.05Proteasome subunit alpha type n=1 Tax=Attheya sept... [more]
A0A067BZB1_SAPPC4.220e-11667.78Proteasome subunit alpha type n=3 Tax=Saprolegniac... [more]
A0A1V9Z6U9_9STRA8.490e-11666.11Proteasome subunit alpha type n=1 Tax=Thraustothec... [more]
A0A6U3ZK57_9STRA1.380e-11567.92Proteasome subunit alpha type n=1 Tax=Skeletonema ... [more]
A0A6S9F1R3_9STRA4.070e-11565.83Proteasome subunit alpha type n=1 Tax=Ditylum brig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1195contigE-siliculosus-1a_F_contig1195:2184..6450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size792
Model size792
Exons6
Ec32 orthologEc-18_004030.1
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko03051,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.25.1
EggNOG OGsCOG0638@1,KOG0863@2759
EggNOG free text desc.threonine-type endopeptidase activity
GOsGO:0000003,GO:0000502,GO:0001530,GO:0001673,GO:0001703,GO:0002682,GO:0002683,GO:0002861,GO:0002862,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005839,GO:0005844,GO:0005856,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0006997,GO:0007088,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007290,GO:0007291,GO:0007346,GO:0007349,GO:0007369,GO:0007370,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009506,GO:0009653,GO:0009790,GO:0009896,GO:0009987,GO:0010004,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016579,GO:0019538,GO:0019773,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030054,GO:0030071,GO:0030154,GO:0030163,GO:0031331,GO:0031347,GO:0031348,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0043073,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046685,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051247,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0080134,GO:0090068,GO:0097159,GO:0097367,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2001252
KEGG ModuleM00337,M00340
KEGG Pathwayko03050,map03050
KEGG koko:K02725,ko:K13141
Preferred namePSMA1
Seed eggNOG ortholog2880.D8LID9
Seed ortholog evalue9e-147
Seed ortholog score526.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1195.1236.1prot_E-siliculosus-1a_F_contig1195.1236.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1195 2184..6450 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.2013624-CDS-E-siliculosus-1a_F_contig1195:2183..22131622927712.2013624-CDS-E-siliculosus-1a_F_contig1195:2183..2213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 2184..2213 -
1696318649.9456356-CDS-E-siliculosus-1a_F_contig1195:2183..22131696318649.9456356-CDS-E-siliculosus-1a_F_contig1195:2183..2213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 2184..2213 -
1622927712.2148733-CDS-E-siliculosus-1a_F_contig1195:2972..30831622927712.2148733-CDS-E-siliculosus-1a_F_contig1195:2972..3083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 2973..3083 -
1696318649.95536-CDS-E-siliculosus-1a_F_contig1195:2972..30831696318649.95536-CDS-E-siliculosus-1a_F_contig1195:2972..3083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 2973..3083 -
1622927712.226568-CDS-E-siliculosus-1a_F_contig1195:3388..34991622927712.226568-CDS-E-siliculosus-1a_F_contig1195:3388..3499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 3389..3499 -
1696318649.9659472-CDS-E-siliculosus-1a_F_contig1195:3388..34991696318649.9659472-CDS-E-siliculosus-1a_F_contig1195:3388..3499Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 3389..3499 -
1622927712.2400475-CDS-E-siliculosus-1a_F_contig1195:3936..41891622927712.2400475-CDS-E-siliculosus-1a_F_contig1195:3936..4189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 3937..4189 -
1696318649.9733388-CDS-E-siliculosus-1a_F_contig1195:3936..41891696318649.9733388-CDS-E-siliculosus-1a_F_contig1195:3936..4189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 3937..4189 -
1622927712.2552524-CDS-E-siliculosus-1a_F_contig1195:5781..60051622927712.2552524-CDS-E-siliculosus-1a_F_contig1195:5781..6005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 5782..6005 -
1696318649.9806836-CDS-E-siliculosus-1a_F_contig1195:5781..60051696318649.9806836-CDS-E-siliculosus-1a_F_contig1195:5781..6005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 5782..6005 -
1622927712.267614-CDS-E-siliculosus-1a_F_contig1195:6387..64501622927712.267614-CDS-E-siliculosus-1a_F_contig1195:6387..6450Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 6388..6450 -
1696318649.9880137-CDS-E-siliculosus-1a_F_contig1195:6387..64501696318649.9880137-CDS-E-siliculosus-1a_F_contig1195:6387..6450Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 6388..6450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1195.1236.1

>prot_E-siliculosus-1a_F_contig1195.1236.1 ID=prot_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp
MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALK
RAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYG
TTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHVFQTCPS
GNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVT
GDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGD
GEEKAPAPDAGMA*
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mRNA from alignment at E-siliculosus-1a_F_contig1195:2184..6450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1195.1236.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4267bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:2184..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCGCAATCAGTACGACACGGATGTGACCGTTTGGAGCCCGCAAGG TCGTCTTCACCAGGTGAGGTGCAGTATGAAACGCCACGGACACGAGCCCC ACTGGTATTTTTGCCCTAGCGCTATTCTGTCCCCGCGGATATGCTGCTGC CGCATCTCTGTAGGTGCTGAGAATCGCGAACAGCATGTTTGGCGTGAGGT TGCGAATCTCTGCATCATGCCGGCCTGTTGCGGGGTCAGAAACAAGTGAT ACAGGTGTTGTTGCACGCGACACTATTCCGCATCGCCTGACCCGTGCTGT ACGGAGCCACTCACGTAGGAAGCAGCAGTCTAGTCTTTGTGTTAGGCATG TAGACGTCTTCTTTGCTGCCACACGAGCTGTAGCCACGGGGCGAATTTTC GCCTTTTACCTTATCTCGAAACCCCCCAAATGTCGGCCTTCCCAGGTGGA GTATGCGATGGAGGCGGTGAAGCAGGGGGGGGCGTCTTTGGGGCTCCGCA GCGGTAGCCACGTGGTTCTGGCGGCCCTGAAAAGGGCACCGAACGAGATG TCGGCACCGCAGAAGAAAATCTTCAAGCTCGACAGCAACATGGGCGTGGC CATCGCGGGGCTCACCGCGGACGCTAGGTCGCTGGCGAAGTACATGCGAA CAGAGTGCCTCAACCACAAGTGAGTCGTTCAGTTGTTGCGCCACCTTTCC TCGGCGGCATTGGCTGTGCCTGTCGAGGACACCGCTGTTTCCCTCGGTAA TACCTGCGTCGAATGTCGACCGGGCGTTATGATGTGCTGCAGCAACAGCA GCACGTGGATAGAAAAACCAAGCACAACTGGAGGTCAAAAACACCGTGCG GGAAATATCAAGCACAGTAGTTTAACCGGCCAAGCAATGCTTATTCCTGG CGCTTGAAAACGCGCCTCTTTCAGTCGATGCATCTAAAGAAGAGGCCTCA AGCGCTGCCGCAGACAAACACAGCAGTTCATTGGGCAGACCCCGGCTAGA TCCTGCAGATCGCTCAGCTGGCGTACGACCGGTGACCGCGTGCACATGGG CCAGATACCGAGCGCGGAACGTGCTCGAGCAGGCCATAGCTCAAGAATTC TAACATTTTTTCCTACTCTTCTATCGTGCAAGCTAGAACGGGTCGAGATC GTATAGAACTCACAGAACCATACCCTCACCGTCCTGGCTACGCCGTTTTA TGTCTCCAAAAACTATTTCCAAAATTAAATAGTATCTCAGCCGCCGGCGG GGCTACCTGACCTTCACGCCGATTAAACAGATTACAAAGTATTGGTATTT GCTCTTACGATGCCGCTCTGCATGCCCATCCGGGAGCCGCCCCGACCGTA CGTTTGCTCTTGCCCGCGACGCCGGCGCTTTCGCTGCCCCCCCCCCTGCG CGGCTTTCCGCGTGTGGTCGCGCGGGCATTCCAGCTGGTAGTCCTTTCCG CTAGGCTCGACATATGATCCCGTTCCAGCAGTTTGTCCAAGTCCTTGAAC TTCGGTATCTGCACGCTGTCCGTCGTGTCCGGCGGTGGACCACCCGCCGA TGCGTCACCGGAGGGCACGACGAACGGCATGCAGGTACCCAAGTTCAAGG ACTGGAAGAAGTCCTGGAACTGGGTGACATGTCGAGCCTAGCGGAAAGGG CTAGGGGCTGGAACGCCCGCACGTCAGCAGGCGGCCTCAAGCGGAAACAT GCAACAGCAGTGCGTGGATAGAAACACCAAAAGCACTTTGGAGGTCAAAC AGCGTGCGGGGAATATAAAGCACAGTATTTTAACCGGCCAAGCGATGCCT ACTCTTGGCCCTTGAAAACTCGCCTCTTTCAGTCGATGTATCACAAGAAG AGACCTCATGAACTGCCGCAGAGAAACACAGCAGTCCACTGGGTAGACCC CCGCTGATTCCTGCAGCATCGCTCAGCGGATGGTAAACACATTATATCAC AGGGGCCAGACACGGAGCGGGAAGGTGCTCGACCAGTTTTGGCAAAGGGT GATGACGATTCGTGCCACCTCAATGTTTCTGAGAAGAGAAGAACTATCAA CTCCTGCTTGGCAAATATTTGCAGCTTGAATTGAAGGCGGTGATTCCAGC CTGAACCACGCACAGCAGAAGAGATACTGTAGGTTCACATGACAAGGAGT CACGTCAGGCGTAGCGCCTTTTTCTCTTCCCCGCACGAACGTGGTTCACA CGACAAAGAGGCAGTCAGGTTGTAACCCCTTTTCGTTCCCCGGGACAAAA ACGTTTCGCAGGTACGTGTACGGAACCACCATGCAGGCGAGCCGCTTGGT CCTGGACCTCGCGGACATGCACCAAAGGACCACTCAGAGCTACGTCCGCC GGCCGTACGGCGTGGGCATGCTGGTGGCCGCGCACGACCAAACGGGACCG CACGTGTTCCAGACGTGCCCCAGCGGGAACTACTTCGAGTACGTGGCCAT GGCCATCGGCGCGCGATCGCAGTCGGCCAAGACTTACCTCGAGAAGCACT TCGAGGAATTCGAGGTAAGAAAGGTACTGCCGCGCCGCGCCGCAGGAATT ACCCGTGTTGAAGAGAAAGCTTGCCGCAAGCGGCGGACAAAAGGAGCGTC GTCGTAGTTGTTTTGACTCGATCTTCAACAACTCCAACTCTGTGTGAAAC CTGTCCGTAGCAGTGGATGCTAAGGCGGGGCTGGGTTGACCGCCAACGGG CCTGGCCGTCCTTTCGTTGCCTCCGTGTTGGTCGGCGGGTGGATTGGGAA AGCGTGCCGGCTGTACAGGGCGGCGAACTTCCGATGTTGGGAGTTAGCGC CGTCCTTTTTTTTCTTCTTGGATTTTTTCACTCTAACATGCGTAAAATGT CTCGTCCGACGATCGTACGCCCTGTCAAGCTTTACCCACCGAAAGAATCG TTGCCGCGCCGTTTGCGTGTTGTCGTCCTTGCCGCGACAAACCGCGGACA GAACTGCGACCTGGACGAGTTGGTCAAGCATGCCTTGAAGGCGTTATCTG GCTGCGTGACAGGGGACAAGGAGCTGGACGCGAACGGGCTGACCCTCGCC ATCGTCGGCAAGGTGAGGCGCGCCTGATCAAACTGGTTTTCCCATGCCTA ACCTTCTTGCCGTGTGCATTGGTCGGTCTACGTGTGGCCAAAGTTGTGTG TTTTTCCCCACCTGCGGTGAACGGTAAATTTAGGGCTGCGACACCAATTA AGTGTCAATACCTTTTTGTCGTGAAACGCCGTTAACGGACCTCATTCCGC TCGTGGATTGTTGGGCGGCAAAGCCAGCGACGGTCGACGAAGCATCCGGG GAGCATTTCTGACCGGGCTTTCGGTGCGGCGGCTTCGGTGTCCGTTGTTT TTTTTTCCGTTGAGTAGGACAAGGTGTTCGAGTCGCTGGAGGGCGAACAG TTGCAGCCCTACATGGATGCCATCGAGCTCGAGGGGAACGCGGCGCAACC CATGGACGAGGGGGACGGGGAAGAGAAGGTAAGACAACAACCTCCATCGT CGATGGGCATGTGTGATCATCCCTCTCGCAGGAGACGCAAACACGTCATG CGCACGACATTCCTGTTGGGCGTTCGTGTTCCTGGCGGTGTGTACAATAC GTAGGTAGAACCCGTGCTACTTTCGAAGTGTTTTTTTTTTCGTTTAGCCA ACTATGTAGTGCGCGTGAATAAAAAACACAGGCGTGTCGTAGTGTCCTTT TGAAGTGCAAGTCGAATGCCAGCGAAAGGTGGGTGGATATCTTAACGGAG CGCCTATACTCTGTTCAACTGCAAGTTTCCCCTTTGTCACTAATACTTTG CCGCATCTGTGATAATAAATATCTCGGCTATTCGAGGTTAAATACGAGAC ATGCCCACTTCCGATAAAGTACGCCTAACAAATGTCTACACAGCCTGGTT CCACGTGTTGCAATCCCACATGTAGGGGGATGGTACTCTTAAAACGTAGG GACCGATCGCCGCAAATACGGCACAGCCTGCTGGCCCAAATCGAACCCCC ACCCCGGGATACTCGTTCCCAGAGGCTTAAAGATGTCATCGCTTCAATGT TAACTTCGATGCGAGATCACGTTGGGCTTGTCTTTAGTCCATCCACTGGG ATATCATCGCTACGGTGTGGTTCCGTGTCCGAGCGATGCTAGGTTATTGT AGCTCCGACGAATGTCAGCTTTCGAGTGTCGTCTCATGCCGCACCCATAT TCATGTCCCGATTCTGACTGTTGTCCAATATCTTCAGGCGCCGGCTCCGG ACGCAGGGATGGCATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1195:2184..6450-

>mRNA_E-siliculosus-1a_F_contig1195.1236.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1236.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:2184..6450- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCCGCAATCAGTACGACACGGATGTGACCGTTTGGAGCCCGCAAGG
TCGTCTTCACCAGATGTTCCGCAATCAGTACGACACGGATGTGACCGTTT
GGAGCCCGCAAGGTCGTCTTCACCAGGTGGAGTATGCGATGGAGGCGGTG
AAGCAGGGGGGGGCGTCTTTGGGGCTCCGCAGCGGTAGCCACGTGGTTCT
GGCGGCCCTGAAAAGGGCACCGAACGAGATGTCGGCACCGCAGAAGAAAA
TCTTCAAGCTCGACAGCAACATGGGCGTGGCCATCGCGGGGCTCACCGCG
GACGCTAGGTCGCTGGCGAAGTACATGCGAACAGAGTGCCTCAACCACAA
GTGGAGTATGCGATGGAGGCGGTGAAGCAGGGGGGGGCGTCTTTGGGGCT
CCGCAGCGGTAGCCACGTGGTTCTGGCGGCCCTGAAAAGGGCACCGAACG
AGATGTCGGCACCGCAGAAGAAAATCTTCAAGCTCGACAGCAACATGGGC
GTGGCCATCGCGGGGCTCACCGCGGACGCTAGGTCGCTGGCGAAGTACAT
GCGAACAGAGTGCCTCAACCACAAGTACGTGTACGGAACCACCATGCAGG
CGAGCCGCTTGGTCCTGGACCTCGCGGACATGCACCAAAGGACCACTCAG
AGCTACGTCCGCCGGCCGTACGGCGTGGGCATGCTGGTGGCCGCGCACGA
CCAAACGGGACCGCACGTGTTCCAGACGTGCCCCAGCGGGAACTACTTCG
AGTACGTGGCCATGGCCATCGGCGCGCGATCGCAGTCGGCCAAGACTTAC
CTCGAGAAGCACTTCGAGGAATTCGAGGTACGTGTACGGAACCACCATGC
AGGCGAGCCGCTTGGTCCTGGACCTCGCGGACATGCACCAAAGGACCACT
CAGAGCTACGTCCGCCGGCCGTACGGCGTGGGCATGCTGGTGGCCGCGCA
CGACCAAACGGGACCGCACGTGTTCCAGACGTGCCCCAGCGGGAACTACT
TCGAGTACGTGGCCATGGCCATCGGCGCGCGATCGCAGTCGGCCAAGACT
TACCTCGAGAAGCACTTCGAGGAATTCGAGAACTGCGACCTGGACGAGTT
GGTCAAGCATGCCTTGAAGGCGTTATCTGGCTGCGTGACAGGGGACAAGG
AGCTGGACGCGAACGGGCTGACCCTCGCCATCGTCGGCAAGAACTGCGAC
CTGGACGAGTTGGTCAAGCATGCCTTGAAGGCGTTATCTGGCTGCGTGAC
AGGGGACAAGGAGCTGGACGCGAACGGGCTGACCCTCGCCATCGTCGGCA
AGGACAAGGTGTTCGAGTCGCTGGAGGGCGAACAGTTGCAGCCCTACATG
GATGCCATCGAGCTCGAGGGGAACGCGGCGCAACCCATGGACGAGGGGGA
CGGGGAAGAGAAGGACAAGGTGTTCGAGTCGCTGGAGGGCGAACAGTTGC
AGCCCTACATGGATGCCATCGAGCTCGAGGGGAACGCGGCGCAACCCATG
GACGAGGGGGACGGGGAAGAGAAGGCGCCGGCTCCGGACGCAGGGATGGC
ATGAGCGCCGGCTCCGGACGCAGGGATGGCATGA
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