mRNA_E-siliculosus-1a_F_contig1195.1235.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1195.1235.1
Unique NamemRNA_E-siliculosus-1a_F_contig1195.1235.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1195.1235.1 vs. uniprot
Match: A0A6H5JIV0_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIV0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.070e-6
Identity = 52/103 (50.49%), Postives = 53/103 (51.46%), Query Frame = -1 
Query:  130 MKSSYALAVALAFCRGPTAVVSFLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--REDCKSCMEAELXXXXXXXXXXXXXXXXXXTRRAALEE 432
            MK+ YALAV L  CRGPTAVVSFLPP                                       REDCKSCMEAEL  XXXXXXXXXXXX    TRR ALEE
Sbjct:    1 MKACYALAVVLGLCRGPTAVVSFLPPPATALALARAKSSASEAAGPSIAASSVAAGGRGSRLAAAREDCKSCMEAELLEXXXXXXXXXXXXEGAATRRGALEE 103
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1195.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV0_9PHAE1.070e-650.49Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1195contigE-siliculosus-1a_F_contig1195:154..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size348
Model size555
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1195.1235.1prot_E-siliculosus-1a_F_contig1195.1235.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1195 227..574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.1149538-UTR-E-siliculosus-1a_F_contig1195:153..2261622927712.1149538-UTR-E-siliculosus-1a_F_contig1195:153..226Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1195 154..226 +
1696318649.9217548-UTR-E-siliculosus-1a_F_contig1195:153..2261696318649.9217548-UTR-E-siliculosus-1a_F_contig1195:153..226Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1195 154..226 +
1622927712.1486924-UTR-E-siliculosus-1a_F_contig1195:574..7081622927712.1486924-UTR-E-siliculosus-1a_F_contig1195:574..708Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1195 575..708 +
1696318649.9370403-UTR-E-siliculosus-1a_F_contig1195:574..7081696318649.9370403-UTR-E-siliculosus-1a_F_contig1195:574..708Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1195 575..708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.1297715-CDS-E-siliculosus-1a_F_contig1195:226..5741622927712.1297715-CDS-E-siliculosus-1a_F_contig1195:226..574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 227..574 +
1696318649.9293644-CDS-E-siliculosus-1a_F_contig1195:226..5741696318649.9293644-CDS-E-siliculosus-1a_F_contig1195:226..574Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1195 227..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1195.1235.1

>prot_E-siliculosus-1a_F_contig1195.1235.1 ID=prot_E-siliculosus-1a_F_contig1195.1235.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
MWGGRLTSKNTLSRANTPTSSNAALLVAAPSAPPPFAAAFLSSSNSSASM
QLLQSSRAAARREPRPPAATLEAAINGPAATGALLFAPASAVVGGGRNDT
TAVGPLQKAKATAKA*
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mRNA from alignment at E-siliculosus-1a_F_contig1195:154..708+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1195.1235.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1235.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=555bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:154..708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCACTAAGACTGACGTCTTTTCATTGGTCAGCCGGTTAGTGCGGTCGAT
GCTAATAATAAAAACACACACCCATGTGGGGTGGTCGGCTAACTTCGAAA
AATACTCTCTCGCGCGCGAACACACCCACCTCTTCCAACGCTGCCCTCCT
GGTCGCAGCGCCTTCCGCCCCACCCCCCTTTGCGGCTGCCTTCCTCTCCT
CCTCCAACAGCTCCGCCTCCATGCAGCTCTTGCAGTCCTCGCGGGCCGCA
GCCAGGCGAGAGCCACGGCCCCCTGCAGCAACACTTGAAGCAGCAATCAA
CGGCCCGGCCGCTACCGGAGCACTGCTCTTTGCACCGGCAAGCGCCGTGG
TCGGGGGGGGAAGGAACGACACCACTGCTGTGGGCCCCCTGCAGAAGGCC
AAGGCCACTGCCAAAGCGTAGGATGACTTCATCGCTGAGTACAGTGGGAT
TTGGTAAAACAGCGTTTGCTACACAGCAGCAGCAGTGAGAGGGAGACGTG
GCAGCGGACAAACAAGGACAAGCGGAGGGGGGCCGACAGATAGAGTCTTT
CGTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1195:154..708+

>mRNA_E-siliculosus-1a_F_contig1195.1235.1 ID=mRNA_E-siliculosus-1a_F_contig1195.1235.1|Name=mRNA_E-siliculosus-1a_F_contig1195.1235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1195:154..708+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGGGTGGTCGGCTAACTTCGAAAAATACTCTCTCGCGCGCGAACAC
ACCCACCTCTTCCAACGCTGCCCTCCTGGTCGCAGCGCCTTCCGCCCCAC
CCCCCTTTGCGGCTGCCTTCCTCTCCTCCTCCAACAGCTCCGCCTCCATG
CAGCTCTTGCAGTCCTCGCGGGCCGCAGCCAGGCGAGAGCCACGGCCCCC
TGCAGCAACACTTGAAGCAGCAATCAACGGCCCGGCCGCTACCGGAGCAC
TGCTCTTTGCACCGGCAAGCGCCGTGGTCGGGGGGGGAAGGAACGACACC
ACTGCTGTGGGCCCCCTGCAGAAGGCCAAGGCCACTGCCAAAGCGTAGAT
GTGGGGTGGTCGGCTAACTTCGAAAAATACTCTCTCGCGCGCGAACACAC
CCACCTCTTCCAACGCTGCCCTCCTGGTCGCAGCGCCTTCCGCCCCACCC
CCCTTTGCGGCTGCCTTCCTCTCCTCCTCCAACAGCTCCGCCTCCATGCA
GCTCTTGCAGTCCTCGCGGGCCGCAGCCAGGCGAGAGCCACGGCCCCCTG
CAGCAACACTTGAAGCAGCAATCAACGGCCCGGCCGCTACCGGAGCACTG
CTCTTTGCACCGGCAAGCGCCGTGGTCGGGGGGGGAAGGAACGACACCAC
TGCTGTGGGCCCCCTGCAGAAGGCCAAGGCCACTGCCAAAGCGTAG
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