mRNA_E-siliculosus-1a_F_contig11927.1230.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11927.1230.1
Unique NamemRNA_E-siliculosus-1a_F_contig11927.1230.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.110e-31
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGLCGG 198
            ++EHFP SRITYILPGQSTVLSAGGRAVEIKATTGA+LGPPWQQAENGVIVRPVAADGD+K   GG
Sbjct:  125 LEEHFPASRITYILPGQSTVLSAGGRAVEIKATTGAILGPPWQQAENGVIVRPVAADGDEKDPEGG 190          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S4BXP7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXP7_CHRCT)

HSP 1 Score: 62.4 bits (150), Expect = 1.120e-10
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENG-VIVRPVAADG 174
            ++ HF  S+ITY+  GQ+ ++SA G +V ++AT+GA++GPPWQ  ENG V+  P A +G
Sbjct:   82 LERHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSAGEG 140          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: C5YTD8_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5YTD8_SORBI)

HSP 1 Score: 61.2 bits (147), Expect = 2.300e-9
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAA-DGDDKG 186
            P  R+TY+ PGQSTV++   + V + AT G VLGPPWQ+ ENG I+ P  A DGD+ G
Sbjct:  199 PFRRVTYLEPGQSTVVN---QQVRVLATAGPVLGPPWQRPENGYILMPAGAGDGDESG 253          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S4F8K0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F8K0_CHRCT)

HSP 1 Score: 61.2 bits (147), Expect = 2.330e-9
Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAA 168
            ++ HF  S+ITY+  GQ+ ++SA G +V ++AT+GA++GPPWQ  ENG ++   +A
Sbjct:  206 LERHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSA 261          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S3XJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJM1_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 5.800e-9
Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVR 156
            +++++PE R+TY+ PG +  +   G+ +++ ATTGA++GPPWQ  ENG I++
Sbjct:  194 LKKYYPEGRVTYLSPGDTIEVEVKGKTLKVTATTGALVGPPWQAKENGYILQ 245          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: UPI0019D5CCAB (uncharacterized protein LOC120667174 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5CCAB)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-8
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDD 180
            P  R+TY+ PGQST +   G  V++ AT G VLGPPWQ+ ENG I+    AD DD
Sbjct:  196 PFRRVTYLEPGQSTAV---GDQVQVLATAGPVLGPPWQRPENGYILLMTTADDDD 247          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A498HF70_MALDO (Uncharacterized protein n=2 Tax=Maleae TaxID=721813 RepID=A0A498HF70_MALDO)

HSP 1 Score: 57.0 bits (136), Expect = 7.090e-8
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   22 SRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIV 153
            S +TY+ PGQS+++ AG G  V+++AT G VLGPPWQ+ ENG +V
Sbjct:  178 SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 222          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A5N5HBM0_9ROSA (BRO1 domain-containing protein BROX n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HBM0_9ROSA)

HSP 1 Score: 57.0 bits (136), Expect = 7.470e-8
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   22 SRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIV 153
            S +TY+ PGQS+++ AG G  V+++AT G VLGPPWQ+ ENG +V
Sbjct:  366 SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 410          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A4D6LNG1_VIGUN (Metallo-beta-lactamase n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6LNG1_VIGUN)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-7
Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query:   28 ITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGL 189
            +TY+ PGQS  +    G  + IKAT G VLGPPWQ+ ENG IV     D D KGL
Sbjct:  179 VTYLEPGQSFDIETNYGSMINIKATAGPVLGPPWQRPENGFIVPMKNGDLDSKGL 233          
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A0A9DDA9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DDA9_ARUDO)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGL 189
            P  R+TY+ PGQSTV++     + + AT G VLGPPWQ+ ENG I+   A DG   GL
Sbjct:   97 PFRRVTYLEPGQSTVVNDH---IRVLATAGPVLGPPWQRPENGYILTAGADDGMSGGL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y2_ECTSI1.110e-3187.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4BXP7_CHRCT1.120e-1047.46Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
C5YTD8_SORBI2.300e-953.45Uncharacterized protein n=3 Tax=Andropogoneae TaxI... [more]
A0A7S4F8K0_CHRCT2.330e-944.64Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S3XJM1_HETAK5.800e-942.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0019D5CCAB2.070e-852.73uncharacterized protein LOC120667174 n=1 Tax=Panic... [more]
A0A498HF70_MALDO7.090e-855.56Uncharacterized protein n=2 Tax=Maleae TaxID=72181... [more]
A0A5N5HBM0_9ROSA7.470e-855.56BRO1 domain-containing protein BROX n=1 Tax=Pyrus ... [more]
A0A4D6LNG1_VIGUN1.360e-752.73Metallo-beta-lactamase n=1 Tax=Vigna unguiculata T... [more]
A0A0A9DDA9_ARUDO1.560e-750.00Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11927contigE-siliculosus-1a_F_contig11927:156..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size201
Model size201
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
Ec32 orthologEc-07_003700.1
Ec32 ortholog descriptionBeta-lactamase-like
EggNOG OGs2QQUU@2759,COG2220@1
EggNOG free text desc.Beta-lactamase superfamily domain
Seed eggNOG ortholog2880.D7G1Y2
Seed ortholog evalue3.8e-25
Seed ortholog score120.2
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.4244576-CDS-E-siliculosus-1a_F_contig11927:155..3561622927711.4244576-CDS-E-siliculosus-1a_F_contig11927:155..356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11927 156..356 +
1696318649.5699975-CDS-E-siliculosus-1a_F_contig11927:155..3561696318649.5699975-CDS-E-siliculosus-1a_F_contig11927:155..356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11927 156..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11927.1230.1prot_E-siliculosus-1a_F_contig11927.1230.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11927 156..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11927.1230.1

>prot_E-siliculosus-1a_F_contig11927.1230.1 ID=prot_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVI
VRPVAADGDDKGLCGG*
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mRNA from alignment at E-siliculosus-1a_F_contig11927:156..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11927.1230.1 ID=mRNA_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=201bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11927:156..356+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAGCACTTCCCGGAGTCCCGCATCACCTACATCCTGCCCGGGCA GTCGACGGTGCTCTCGGCCGGGGGGCGCGCGGTGGAGATTAAAGCCACCA CCGGGGCGGTTCTCGGCCCCCCCTGGCAGCAGGCCGAGAACGGGGTCATC GTCCGTCCCGTGGCAGCAGACGGCGATGACAAAGGTTTGTGCGGGGGATA A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11927:156..356+

>mRNA_E-siliculosus-1a_F_contig11927.1230.1 ID=mRNA_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11927:156..356+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAGCACTTCCCGGAGTCCCGCATCACCTACATCCTGCCCGGGCA
GTCGACGGTGCTCTCGGCCGGGGGGCGCGCGGTGGAGATTAAAGCCACCA
CCGGGGCGGTTCTCGGCCCCCCCTGGCAGCAGGCCGAGAACGGGGTCATC
GTCCGTCCCGTGGCAGCAGACGGCGATGACAAAGGTTTGTGCGGGGGATA
AATGCAGGAGCACTTCCCGGAGTCCCGCATCACCTACATCCTGCCCGGGC
AGTCGACGGTGCTCTCGGCCGGGGGGCGCGCGGTGGAGATTAAAGCCACC
ACCGGGGCGGTTCTCGGCCCCCCCTGGCAGCAGGCCGAGAACGGGGTCAT
CGTCCGTCCCGTGGCAGCAGACGGCGATGACAAAGGTTTGTGCGGGGGAT
AA
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