mRNA_E-siliculosus-1a_F_contig11927.1230.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: D7G1Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y2_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.110e-31 Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 1
Query: 1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGLCGG 198
++EHFP SRITYILPGQSTVLSAGGRAVEIKATTGA+LGPPWQQAENGVIVRPVAADGD+K GG
Sbjct: 125 LEEHFPASRITYILPGQSTVLSAGGRAVEIKATTGAILGPPWQQAENGVIVRPVAADGDEKDPEGG 190
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S4BXP7_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXP7_CHRCT) HSP 1 Score: 62.4 bits (150), Expect = 1.120e-10 Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENG-VIVRPVAADG 174
++ HF S+ITY+ GQ+ ++SA G +V ++AT+GA++GPPWQ ENG V+ P A +G
Sbjct: 82 LERHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSAGEG 140
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: C5YTD8_SORBI (Uncharacterized protein n=3 Tax=Andropogoneae TaxID=147429 RepID=C5YTD8_SORBI) HSP 1 Score: 61.2 bits (147), Expect = 2.300e-9 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAA-DGDDKG 186
P R+TY+ PGQSTV++ + V + AT G VLGPPWQ+ ENG I+ P A DGD+ G
Sbjct: 199 PFRRVTYLEPGQSTVVN---QQVRVLATAGPVLGPPWQRPENGYILMPAGAGDGDESG 253
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S4F8K0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F8K0_CHRCT) HSP 1 Score: 61.2 bits (147), Expect = 2.330e-9 Identity = 25/56 (44.64%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAA 168
++ HF S+ITY+ GQ+ ++SA G +V ++AT+GA++GPPWQ ENG ++ +A
Sbjct: 206 LERHFAPSQITYLSSGQTKLVSAAGSSVSLRATSGALVGPPWQARENGYVLSSPSA 261
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A7S3XJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJM1_HETAK) HSP 1 Score: 60.1 bits (144), Expect = 5.800e-9 Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVR 156
+++++PE R+TY+ PG + + G+ +++ ATTGA++GPPWQ ENG I++
Sbjct: 194 LKKYYPEGRVTYLSPGDTIEVEVKGKTLKVTATTGALVGPPWQAKENGYILQ 245
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: UPI0019D5CCAB (uncharacterized protein LOC120667174 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5CCAB) HSP 1 Score: 58.5 bits (140), Expect = 2.070e-8 Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDD 180
P R+TY+ PGQST + G V++ AT G VLGPPWQ+ ENG I+ AD DD
Sbjct: 196 PFRRVTYLEPGQSTAV---GDQVQVLATAGPVLGPPWQRPENGYILLMTTADDDD 247
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A498HF70_MALDO (Uncharacterized protein n=2 Tax=Maleae TaxID=721813 RepID=A0A498HF70_MALDO) HSP 1 Score: 57.0 bits (136), Expect = 7.090e-8 Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 22 SRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIV 153
S +TY+ PGQS+++ AG G V+++AT G VLGPPWQ+ ENG +V
Sbjct: 178 SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 222
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A5N5HBM0_9ROSA (BRO1 domain-containing protein BROX n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HBM0_9ROSA) HSP 1 Score: 57.0 bits (136), Expect = 7.470e-8 Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 22 SRITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIV 153
S +TY+ PGQS+++ AG G V+++AT G VLGPPWQ+ ENG +V
Sbjct: 366 SNVTYLEPGQSSIIEAGNGSTVKVQATAGPVLGPPWQRPENGYLV 410
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A4D6LNG1_VIGUN (Metallo-beta-lactamase n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6LNG1_VIGUN) HSP 1 Score: 55.8 bits (133), Expect = 1.360e-7 Identity = 29/55 (52.73%), Postives = 34/55 (61.82%), Query Frame = 1
Query: 28 ITYILPGQSTVLSAG-GRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGL 189
+TY+ PGQS + G + IKAT G VLGPPWQ+ ENG IV D D KGL
Sbjct: 179 VTYLEPGQSFDIETNYGSMINIKATAGPVLGPPWQRPENGFIVPMKNGDLDSKGL 233
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Match: A0A0A9DDA9_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DDA9_ARUDO) HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7 Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 16 PESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIVRPVAADGDDKGL 189
P R+TY+ PGQSTV++ + + AT G VLGPPWQ+ ENG I+ A DG GL
Sbjct: 97 PFRRVTYLEPGQSTVVNDH---IRVLATAGPVLGPPWQRPENGYILTAGADDGMSGGL 151 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11927.1230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11927.1230.1 >prot_E-siliculosus-1a_F_contig11927.1230.1 ID=prot_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp MQEHFPESRITYILPGQSTVLSAGGRAVEIKATTGAVLGPPWQQAENGVIback to top mRNA from alignment at E-siliculosus-1a_F_contig11927:156..356+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11927.1230.1 ID=mRNA_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=201bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11927:156..356+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11927:156..356+ >mRNA_E-siliculosus-1a_F_contig11927.1230.1 ID=mRNA_E-siliculosus-1a_F_contig11927.1230.1|Name=mRNA_E-siliculosus-1a_F_contig11927.1230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11927:156..356+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |