mRNA_E-siliculosus-1a_F_contig11919.1226.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11919.1226.1
Unique NamemRNA_E-siliculosus-1a_F_contig11919.1226.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 9.660e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    1 ISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPSTGLSETGTLRELDRLVAMAEDLGDIVSRHVVNEDIQRRELALPPGPKAYY 258
            ISSFS+LSTLCGGS+ASLEQ+ +LVEALGINRSSP TGL+ TGTL EL+RLVAMAEDLGD+VSRHV NEDIQRRELALPPGPKAYY
Sbjct:  441 ISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLNGTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYY 526
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BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 1.330e-38
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 ISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPSTGLSETGTLRELDRLVAMAEDLGDIVSRHVVNEDIQRRELALPPGPKAYY 258
            ISSFSALSTLCGG   SLEQ+R+LVEALGINRSSP TGLSETGTL E++RLVAMAEDLG +VSRHV+NEDIQRRELALPPGPKAYY
Sbjct:  626 ISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLSETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYY 711
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BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.340e-38
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 ISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPSTGLSETGTLRELDRLVAMAEDLGDIVSRHVVNEDIQRRELALPPGPKAYY 258
            ISSFSALSTLCGGS   LEQ+R+LVEAL INR SP TGLSETGTL EL+RLVAMAEDLGD+VSRHV+NEDIQRRELALPPGPKAYY
Sbjct:  414 ISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYY 499
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BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Match: A0A6H5K9X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.000e-25
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    1 ISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPSTGLSETGTLRELDRLVAMAEDLGDIV 186
            +SSFSALSTLCGGS++SLEQ+R+LVEALGINRSSP TGL ET TL EL+RLVAMAEDL DIV
Sbjct:    6 VSSFSALSTLCGGSRSSLEQVRQLVEALGINRSSPGTGLGETATLGELNRLVAMAEDLDDIV 67
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BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.970e-6
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 1 
Query:  187 SRHVVNEDIQRRELALPPGPKAYY 258
            SRHVVNE IQRRELALPPGPKAYY
Sbjct:    8 SRHVVNEAIQRRELALPPGPKAYY 31
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11919.1226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUA1_ECTSI9.660e-3986.05Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FUA0_ECTSI1.330e-3886.05Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA2_ECTSI3.340e-3886.05Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5K9X6_9PHAE3.000e-2582.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF6_9PHAE6.970e-695.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11919contigE-siliculosus-1a_F_contig11919:1241..1752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size258
Model size262
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1
EggNOG OGs2QQYD@2759,COG4886@1
EggNOG free text desc.protein serine/threonine kinase activity
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
KEGG ModuleM00686
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG koko:K04730,ko:K04733
Seed eggNOG ortholog2880.D7FUA1
Seed ortholog evalue4.8e-33
Seed ortholog score146.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.6842353-CDS-E-siliculosus-1a_F_contig11919:1242..13141622927710.6842353-CDS-E-siliculosus-1a_F_contig11919:1242..1314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11919 1243..1314 -
1696318649.2860436-CDS-E-siliculosus-1a_F_contig11919:1242..13141696318649.2860436-CDS-E-siliculosus-1a_F_contig11919:1242..1314Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11919 1243..1314 -
1622927710.6989484-CDS-E-siliculosus-1a_F_contig11919:1566..17521622927710.6989484-CDS-E-siliculosus-1a_F_contig11919:1566..1752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11919 1567..1752 -
1696318649.2966585-CDS-E-siliculosus-1a_F_contig11919:1566..17521696318649.2966585-CDS-E-siliculosus-1a_F_contig11919:1566..1752Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11919 1567..1752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11919.1226.1prot_E-siliculosus-1a_F_contig11919.1226.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11919 1243..1752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11919.1226.1

>prot_E-siliculosus-1a_F_contig11919.1226.1 ID=prot_E-siliculosus-1a_F_contig11919.1226.1|Name=mRNA_E-siliculosus-1a_F_contig11919.1226.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=86bp
ISSFSALSTLCGGSKASLEQIRKLVEALGINRSSPSTGLSETGTLRELDR
LVAMAEDLGDIVSRHVVNEDIQRRELALPPGPKAYY
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mRNA from alignment at E-siliculosus-1a_F_contig11919:1241..1752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11919.1226.1 ID=mRNA_E-siliculosus-1a_F_contig11919.1226.1|Name=mRNA_E-siliculosus-1a_F_contig11919.1226.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11919:1241..1752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTGGAGGGAGTAAAGCAAG
CCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTGGGCATCAATCGCTCTT
CTCCCAGCACGGGACTTAGCGAGACGGGCACGCTCAGGGAGCTGGACCGG
CTGGTGGCAATGGCCGAAGATCTAGGCGACATCGTGGTGAGCTTTGCACT
GTAGTCTAGAGAACCCTCGGCCCACACCAAGAACGGGTAAGGGCCTGGCG
GAAGCACTTTAGCCAACTCTCATATGGTACACCTTTTGTACTACATAACC
TGGACGAGTTTCCATTTTGCAGGTGTCCTTGTGCCGGTGGCTCTTCCCAC
ACGCACATGGGTCGCATTCCTCCTGCTTCCCTAACGATGTTTTGGCCCAA
CGTTACTGCAAACTGCGATTTCTTGTCTGAGTGCGCAGTCGAGGCACGTG
GTGAATGAAGACATACAGCGGAGGGAGCTGGCTTTGCCCCCGGGTCCCAA
GGCATACTACAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11919:1241..1752-

>mRNA_E-siliculosus-1a_F_contig11919.1226.1 ID=mRNA_E-siliculosus-1a_F_contig11919.1226.1|Name=mRNA_E-siliculosus-1a_F_contig11919.1226.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11919:1241..1752- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTCTTCTTTTTCGGCGTTGAGCACGCTATGTGGAGGGAGTAAAGCAAG
CCTGGAGCAGATTAGAAAGCTTGTTGAAGCACTGGGCATCAATCGCTCTT
CTCCCAGCACGGGACTTAGCGAGACGGGCACGCTCAGGGAGCTGGACCGG
CTGGTGGCAATGGCCGAAGATCTAGGCGACATCGTGATTTCTTCTTTTTC
GGCGTTGAGCACGCTATGTGGAGGGAGTAAAGCAAGCCTGGAGCAGATTA
GAAAGCTTGTTGAAGCACTGGGCATCAATCGCTCTTCTCCCAGCACGGGA
CTTAGCGAGACGGGCACGCTCAGGGAGCTGGACCGGCTGGTGGCAATGGC
CGAAGATCTAGGCGACATCGTGTCGAGGCACGTGGTGAATGAAGACATAC
AGCGGAGGGAGCTGGCTTTGCCCCCGGGTCCCAAGGCATACTACTCGAGG
CACGTGGTGAATGAAGACATACAGCGGAGGGAGCTGGCTTTGCCCCCGGG
TCCCAAGGCATACTAC
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