mRNA_E-siliculosus-1a_F_contig1190.1220.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1190.1220.1
Unique NamemRNA_E-siliculosus-1a_F_contig1190.1220.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.450e-27
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEASEEWVA 153
            GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACK SCEEASEEWVA
Sbjct:  116 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKASCEEASEEWVA 166          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.990e-25
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEASEEWVA 153
            GVFECANRGH SVRLPSSRVGDGVCDCCDGSDEPAG CK SCEEA+EEWVA
Sbjct:  126 GVFECANRGHWSVRLPSSRVGDGVCDCCDGSDEPAGVCKASCEEAAEEWVA 176          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A812L8W4_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L8W4_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 8.880e-15
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEASEEW 147
            G F C N+G R V LPSSRVGDGVCDCCDGSDEP G C  +C+EA  EW
Sbjct:   38 GKFYCVNKGFRGVYLPSSRVGDGVCDCCDGSDEP-GTCADTCDEAGAEW 85          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A067LUJ6_9AGAM (Glucosidase 2 subunit beta n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LUJ6_9AGAM)

HSP 1 Score: 66.2 bits (160), Expect = 2.090e-11
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCD--CCDGSDEPAGACKTSCEEASEEWVA 153
            G+F CAN GH S ++ SSRV DG+C+  CCDGSDEP+G C   CEE  +E+ A
Sbjct:   82 GLFYCANEGHVSAKIRSSRVNDGLCEPECCDGSDEPSGVCPNICEEIGKEYRA 134          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: D8LWM6_BLAHO (PRKCSH-like domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LWM6_BLAHO)

HSP 1 Score: 61.2 bits (147), Expect = 4.670e-11
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    7 FECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSC 126
            F C N+G++SV++ SSRV DG+CDCCDGSDE  G C+  C
Sbjct:   30 FTCENKGYKSVKIYSSRVNDGICDCCDGSDEKEGVCENVC 69          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A7R9U1R5_9VIRI (Glucosidase 2 subunit beta n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U1R5_9VIRI)

HSP 1 Score: 63.2 bits (152), Expect = 2.510e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEASEEWVA 153
            G F C N G+ +  + ++RVGDGVCDCCDG+DEP G C  +C++   E VA
Sbjct:   14 GAFRCENAGYEAALVSAARVGDGVCDCCDGTDEPKGMCGNTCDKELAERVA 64          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A8J5BXR8_9ASCO (Glucosidase 2 subunit beta n=1 Tax=Yarrowia sp. B02 TaxID=2768839 RepID=A0A8J5BXR8_9ASCO)

HSP 1 Score: 63.2 bits (152), Expect = 2.530e-10
Identity = 31/53 (58.49%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    4 VFECANRGHRSVRLPSSRVGDGVCD---CCDGSDEPAGACKTSCEEASEEWVA 153
             F CAN+GH   RLPS+RVGDG+CD   CCDGSDE  G C   C E + E VA
Sbjct:   83 TFYCANKGHIPGRLPSNRVGDGICDYDLCCDGSDEEDGICPNVCAEKAAERVA 135          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A4Q2DHE9_9AGAR (Glucosidase 2 subunit beta n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DHE9_9AGAR)

HSP 1 Score: 63.2 bits (152), Expect = 2.550e-10
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    7 FECANRGHRSVRLPSSRVGDGVC--DCCDGSDEPAGACKTSCEEASEEW 147
            F C N GH    +PSSRVGDG+C  DCCDGSDE +G CK SC+E  E +
Sbjct:   79 FWCQNNGHIGAYIPSSRVGDGLCEPDCCDGSDELSGVCKDSCKEVGEAY 127          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: A0A6A0A7H2_HAELA (PRKCSH-like domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A7H2_HAELA)

HSP 1 Score: 60.5 bits (145), Expect = 4.920e-10
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEAS 138
            G F CANRG+   +L +S V DGVCDCCDGSDE  G CK +C + S
Sbjct:   23 GSFYCANRGYEPQQLSASFVDDGVCDCCDGSDEARGRCKNTCLDKS 68          
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Match: Q6C4G9_YARLI (Glucosidase 2 subunit beta n=3 Tax=Yarrowia TaxID=4951 RepID=Q6C4G9_YARLI)

HSP 1 Score: 61.6 bits (148), Expect = 8.840e-10
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    4 VFECANRGHRSVRLPSSRVGDGVCD---CCDGSDEPAGACKTSCEEASEEWV 150
             F CAN+GH   RLPS+RVGDG+CD   CCDGSDE  G C   C E + E +
Sbjct:   83 TFYCANKGHIPGRLPSNRVGDGICDSDICCDGSDEDDGICPNVCAEMAAERI 134          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1190.1220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y2_ECTSI5.450e-2798.04Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A6H5KIQ9_9PHAE5.990e-2592.16Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
A0A812L8W4_9DINO8.880e-1569.39Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A067LUJ6_9AGAM2.090e-1156.60Glucosidase 2 subunit beta n=1 Tax=Botryobasidium ... [more]
D8LWM6_BLAHO4.670e-1160.00PRKCSH-like domain-containing protein n=1 Tax=Blas... [more]
A0A7R9U1R5_9VIRI2.510e-1050.98Glucosidase 2 subunit beta n=1 Tax=Prasinoderma co... [more]
A0A8J5BXR8_9ASCO2.530e-1058.49Glucosidase 2 subunit beta n=1 Tax=Yarrowia sp. B0... [more]
A0A4Q2DHE9_9AGAR2.550e-1059.18Glucosidase 2 subunit beta n=1 Tax=Candolleomyces ... [more]
A0A6A0A7H2_HAELA4.920e-1058.70PRKCSH-like domain-containing protein (Fragment) n... [more]
Q6C4G9_YARLI8.840e-1055.77Glucosidase 2 subunit beta n=3 Tax=Yarrowia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1190contigE-siliculosus-1a_F_contig1190:35523..35675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size153
Model size153
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko04091
Best eggNOG OGNA|NA|NA
Best tax levelAgaricomycetes incertae sedis
COG Functional cat.T
EggNOG OGs225NX@155619,38EUH@33154,3H2RR@355688,3NY9J@4751,3UYD7@5204,KOG2397@1,KOG2397@2759
EggNOG free text desc.Low-density lipoprotein receptor domain class A
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901576
KEGG Pathwayko04141,map04141
KEGG koko:K08288
Seed eggNOG ortholog984962.XP_009544264.1
Seed ortholog evalue4.9e-09
Seed ortholog score66.2
Taxonomic scopeFungi
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927709.7296329-CDS-E-siliculosus-1a_F_contig1190:35522..356751622927709.7296329-CDS-E-siliculosus-1a_F_contig1190:35522..35675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1190 35523..35675 +
1696318648.77808-CDS-E-siliculosus-1a_F_contig1190:35522..356751696318648.77808-CDS-E-siliculosus-1a_F_contig1190:35522..35675Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1190 35523..35675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1190.1220.1prot_E-siliculosus-1a_F_contig1190.1220.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1190 35523..35675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1190.1220.1

>prot_E-siliculosus-1a_F_contig1190.1220.1 ID=prot_E-siliculosus-1a_F_contig1190.1220.1|Name=mRNA_E-siliculosus-1a_F_contig1190.1220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=51bp
GVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKTSCEEASEEWV
A
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mRNA from alignment at E-siliculosus-1a_F_contig1190:35523..35675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1190.1220.1 ID=mRNA_E-siliculosus-1a_F_contig1190.1220.1|Name=mRNA_E-siliculosus-1a_F_contig1190.1220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=153bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1190:35523..35675+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGTCTTCGAGTGCGCCAACCGCGGGCACCGGTCGGTGCGGCTACCGTC GTCCAGGGTCGGGGACGGCGTGTGCGACTGCTGCGACGGGAGCGACGAGC CGGCAGGGGCCTGCAAGACGTCCTGCGAGGAGGCTTCGGAGGAATGGGTG GCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1190:35523..35675+

>mRNA_E-siliculosus-1a_F_contig1190.1220.1 ID=mRNA_E-siliculosus-1a_F_contig1190.1220.1|Name=mRNA_E-siliculosus-1a_F_contig1190.1220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1190:35523..35675+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGTCTTCGAGTGCGCCAACCGCGGGCACCGGTCGGTGCGGCTACCGTC
GTCCAGGGTCGGGGACGGCGTGTGCGACTGCTGCGACGGGAGCGACGAGC
CGGCAGGGGCCTGCAAGACGTCCTGCGAGGAGGCTTCGGAGGAATGGGTG
GCGGGTGTCTTCGAGTGCGCCAACCGCGGGCACCGGTCGGTGCGGCTACC
GTCGTCCAGGGTCGGGGACGGCGTGTGCGACTGCTGCGACGGGAGCGACG
AGCCGGCAGGGGCCTGCAAGACGTCCTGCGAGGAGGCTTCGGAGGAATGG
GTGGCG
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