mRNA_E-siliculosus-1a_F_contig119.1218.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D7FYT6_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECTSI) HSP 1 Score: 391 bits (1005), Expect = 3.680e-126 Identity = 193/197 (97.97%), Postives = 194/197 (98.48%), Query Frame = 1
Query: 1 QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFE G +
Sbjct: 603 QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFENGSSM 799
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A7S3XKT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKT9_HETAK) HSP 1 Score: 200 bits (508), Expect = 6.560e-61 Identity = 106/205 (51.71%), Postives = 136/205 (66.34%), Query Frame = 1
Query: 4 ARSVILATIADVHYLFVGLGDGHVVSF---PLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVN-SVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTS--YRAVENSD-EEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
ARSV+L YLF GLGDGH+VSF P AL KKVALGTQP+ L+ FRNNG C+F ASDRP+++Y S K+LYA VN GEV + +F S P CLALA + LT+GT+DD+Q+LH+QKV LGE P+RI HH GR++ ++TT + ++ E+EE N+V+FLD T FEE+Y H LDA+E G V V
Sbjct: 43 ARSVLLHRFGGRDYLFAGLGDGHLVSFRLGPGGPDGTGPPALTGKKKVALGTQPIALSVFRNNGTNCIFAASDRPSIVYTSNDKVLYAAVNCGEVTCAAAAFHSPLFPACLALAGPDQLTLGTVDDLQRLHVQKVPLGEQPRRIAHHPGGRLYAVLTTRTLHAGLDPGQAEDEEQNWVRFLDATTFEEVYSHRLDAYEQGLAVEV 247
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: I2CQY4_NANGC (Dna damage-binding protein 1a (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQY4_NANGC) HSP 1 Score: 178 bits (451), Expect = 4.780e-51 Identity = 103/202 (50.99%), Postives = 129/202 (63.86%), Query Frame = 1
Query: 1 QARSVILATI-ADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMV-CVFVASDRPAVIYCS-GGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
QARSV+L T+ AD+HYL VGLGDG +VSF + + + T ALG KKV+LGTQP+ L F + CVFV S+RP VI+ S KLLY+NVN EV + F S+ P CLALASE L IGT+DDIQKL IQ V LGE+P+RI H + ++T Y EN EEE N+V+FLDD +FE + L E+ VA
Sbjct: 153 QARSVLLITLQADIHYLLVGLGDGFLVSFAVALEGK-TPALGPRKKVSLGTQPLSLTPFSSTAAEPCVFVCSERPTVIHVSKADKLLYSNVNTSEVTLMAPFHSALFPDCLALASETGLRIGTVDDIQKLRIQTVPLGESPRRIAHIPQAGVLAVLTAKYAVGENG--EEETNYVRFLDDASFEAVGAFELRPMELACSVAA 351
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A5D6Y169_9STRA (DNA damage-binding protein 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y169_9STRA) HSP 1 Score: 181 bits (459), Expect = 3.880e-49 Identity = 95/197 (48.22%), Postives = 125/197 (63.45%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
RSV+ T D Y+ VGLGDG +V+F ++ +T AL + K+V+LG+QP+ L+ FR+ M VF A DRP VIY + KLLY+NVN EV +C FDS P CLALASE LTIGT+DDIQKLHIQ L E +RI H+ G++T ++ +N DE E+ FV+ +DD FE L+ + LD FE V V
Sbjct: 607 RSVLFNTFEDQDYVLVGLGDGSLVNFHVDA---ATGALSSRKRVSLGSQPIALSTFRSKDMTLVFAACDRPTVIYANNNKLLYSNVNAKEVTVMCPFDSEAFPECLALASEEELTIGTVDDIQKLHIQTFHLHEWARRIAHNSQSHTLGVLTVNFSVDDNGDEVEQ-GFVRLIDDQTFEVLHSYRLDPFESPCSVIV 799
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D0MTY9_PHYIT (DNA damage-binding protein 1 n=8 Tax=Peronosporaceae TaxID=4777 RepID=D0MTY9_PHYIT) HSP 1 Score: 181 bits (459), Expect = 3.900e-49 Identity = 95/197 (48.22%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
RSV+ T YL VGLGDG ++++ L+V ALGT K+V+LG+QP+ L+ FR+ M VF A DRP VIY + KLLY+N+N EVN +C FDS P CLAL+SE LTIGT+DDIQKLHIQ L E +RI H G++T S+ V+++ EE + FV+ DD FE L+ + LD FE V V
Sbjct: 601 RSVLCNTFEGKDYLLVGLGDGSLMNYELDVQQG---ALGTRKRVSLGSQPLSLSTFRSKNMTHVFAACDRPTVIYSNNNKLLYSNINSKEVNVMCPFDSESFPECLALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLTVSF-TVDDTGEEVDQGFVRLFDDQTFEVLHSYRLDPFETPCSVVV 793
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A392Q1E5_9FABA (Damaged DNA-binding protein 1A (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q1E5_9FABA) HSP 1 Score: 166 bits (421), Expect = 5.180e-49 Identity = 89/180 (49.44%), Postives = 114/180 (63.33%), Query Frame = 1
Query: 43 YLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVG 582
YL LGDGH+++F L ST L KKV+LGTQP+ L F + VF ASDRP VIY S KLLY+NVN+ EV+ +C F+S+ P LA+A E LTIGTIDDIQKLHI+ + LGE +RI H + R F I + Y S EE E++FV+ LDD F+ + +PLD +E G
Sbjct: 3 YLLCALGDGHLLNFMLNT---STGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFAICSLKYNPA--SAEESENHFVRLLDDQTFDFISVYPLDTYEYG 177
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A421F2I9_9STRA (DNA damage-binding protein 1 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2I9_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.400e-48 Identity = 95/197 (48.22%), Postives = 122/197 (61.93%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
RSV+ T YL VGLGDG +++F L V LGT K+V+LG+QP+ L+ FR+ M VF A DRP VIY + KLLY+N+N EVN +C FDS P CLAL+SE LTIGT+DDIQKLHIQ L E +RI H G++T S+ V+++ EE + FV+ DD FE L+ + LD FE V V
Sbjct: 601 RSVLCNTFEGRDYLLVGLGDGSLMNFELNVAQGK---LGTRKRVSLGSQPLSLSTFRSKNMTHVFAACDRPTVIYSNNNKLLYSNINSKEVNVMCPFDSESFPECLALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLTLSF-TVDDTGEEVDQGFVRLFDDQTFEVLHSYRLDPFETPCSVVV 793
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D8RBA1_SELML (Uncharacterized protein DDB1-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RBA1_SELML) HSP 1 Score: 179 bits (454), Expect = 1.790e-48 Identity = 95/195 (48.72%), Postives = 122/195 (62.56%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
RSV++ V YL LGDGH+ +F ++ S L KK++LGTQP+ L FR+ VF ASDRP VIY S KLLY+NVN+ EVN +C F+S+ P LA+ E LTIGTIDDIQKLHI+ V+LGE P+RI H + R FG+ T + + N ++ E H FVK LDD FE L + LD FE G +
Sbjct: 583 RSVLICAFEGVSYLLCALGDGHLFNFLIDT---SNGQLSDRKKISLGTQPIMLRTFRSKNATHVFAASDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNSASFPDSLAIGKEGELTIGTIDDIQKLHIRTVALGEHPRRICHQEQTRTFGLCTARFYSNPNGEDHESH-FVKLLDDQTFEVLGSYNLDTFENGCTI 773
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: UPI001BF6B0F6 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF6B0F6) HSP 1 Score: 178 bits (452), Expect = 2.020e-48 Identity = 94/195 (48.21%), Postives = 123/195 (63.08%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
RSV+L + YL LGDGH+++F L ST L KKV+LGTQP+ L F + VF ASDRP VIY S KLLY+NVN+ EV+ +C F+S+ P LA+A E LTIGTIDDIQKLHI+ + LGE P+RI H + R F I + Y ++S E+ E +F++ LDD FE + +PLD FE G +
Sbjct: 341 RSVLLCAFEGISYLLCALGDGHLLNFLLNT---STGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSVKYN--QSSPEDSEMHFIRLLDDQTFEFVSTYPLDTFEYGCSI 530
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A835LC34_9MAGN (DNA damage-binding protein 1 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A835LC34_9MAGN) HSP 1 Score: 179 bits (453), Expect = 2.330e-48 Identity = 96/195 (49.23%), Postives = 123/195 (63.08%), Query Frame = 1
Query: 7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
RSV+L V YL LGDGH+ +F L + ST L KKV+LGTQP+ L F + VF ASDRP VIY S KLLY+NVN+ EV+ +C F+S+ P LA+A E+ LTIGTIDDIQKLHI+ + LGE P+RI H + R F I Y ++S EE E +FV+ LDD FE + +PLD +E G +
Sbjct: 583 RSVLLCAFEGVSYLLCALGDGHLFNFLLNL---STGELSDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEDELTIGTIDDIQKLHIRTIPLGEQPRRIAHQEQSRTFAICCMKYG--QSSTEESEMHFVRLLDDQTFEFISTYPLDTYEYGCSI 772 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig119.1218.1 >prot_E-siliculosus-1a_F_contig119.1218.1 ID=prot_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=204bp QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTback to top mRNA from alignment at E-siliculosus-1a_F_contig119:82865..84080- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig119.1218.1 ID=mRNA_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:82865..84080- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:82865..84080- >mRNA_E-siliculosus-1a_F_contig119.1218.1 ID=mRNA_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:82865..84080- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |