mRNA_E-siliculosus-1a_F_contig119.1218.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig119.1218.1
Unique NamemRNA_E-siliculosus-1a_F_contig119.1218.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D7FYT6_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 3.680e-126
Identity = 193/197 (97.97%), Postives = 194/197 (98.48%), Query Frame = 1
Query:    1 QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
            QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFE G  +
Sbjct:  603 QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFENGSSM 799          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A7S3XKT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKT9_HETAK)

HSP 1 Score: 200 bits (508), Expect = 6.560e-61
Identity = 106/205 (51.71%), Postives = 136/205 (66.34%), Query Frame = 1
Query:    4 ARSVILATIADVHYLFVGLGDGHVVSF---PLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVN-SVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTS--YRAVENSD-EEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
            ARSV+L       YLF GLGDGH+VSF   P         AL   KKVALGTQP+ L+ FRNNG  C+F ASDRP+++Y S  K+LYA VN GEV  +  +F S   P CLALA  + LT+GT+DD+Q+LH+QKV LGE P+RI HH  GR++ ++TT   +  ++    E+EE N+V+FLD T FEE+Y H LDA+E G  V V
Sbjct:   43 ARSVLLHRFGGRDYLFAGLGDGHLVSFRLGPGGPDGTGPPALTGKKKVALGTQPIALSVFRNNGTNCIFAASDRPSIVYTSNDKVLYAAVNCGEVTCAAAAFHSPLFPACLALAGPDQLTLGTVDDLQRLHVQKVPLGEQPRRIAHHPGGRLYAVLTTRTLHAGLDPGQAEDEEQNWVRFLDATTFEEVYSHRLDAYEQGLAVEV 247          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: I2CQY4_NANGC (Dna damage-binding protein 1a (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQY4_NANGC)

HSP 1 Score: 178 bits (451), Expect = 4.780e-51
Identity = 103/202 (50.99%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    1 QARSVILATI-ADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMV-CVFVASDRPAVIYCS-GGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
            QARSV+L T+ AD+HYL VGLGDG +VSF + +  + T ALG  KKV+LGTQP+ L  F +     CVFV S+RP VI+ S   KLLY+NVN  EV  +  F S+  P CLALASE  L IGT+DDIQKL IQ V LGE+P+RI H     +  ++T  Y   EN   EEE N+V+FLDD +FE +    L   E+   VA 
Sbjct:  153 QARSVLLITLQADIHYLLVGLGDGFLVSFAVALEGK-TPALGPRKKVSLGTQPLSLTPFSSTAAEPCVFVCSERPTVIHVSKADKLLYSNVNTSEVTLMAPFHSALFPDCLALASETGLRIGTVDDIQKLRIQTVPLGESPRRIAHIPQAGVLAVLTAKYAVGENG--EEETNYVRFLDDASFEAVGAFELRPMELACSVAA 351          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A5D6Y169_9STRA (DNA damage-binding protein 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y169_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.880e-49
Identity = 95/197 (48.22%), Postives = 125/197 (63.45%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
            RSV+  T  D  Y+ VGLGDG +V+F ++    +T AL + K+V+LG+QP+ L+ FR+  M  VF A DRP VIY +  KLLY+NVN  EV  +C FDS   P CLALASE  LTIGT+DDIQKLHIQ   L E  +RI H+      G++T ++   +N DE E+  FV+ +DD  FE L+ + LD FE    V V
Sbjct:  607 RSVLFNTFEDQDYVLVGLGDGSLVNFHVDA---ATGALSSRKRVSLGSQPIALSTFRSKDMTLVFAACDRPTVIYANNNKLLYSNVNAKEVTVMCPFDSEAFPECLALASEEELTIGTVDDIQKLHIQTFHLHEWARRIAHNSQSHTLGVLTVNFSVDDNGDEVEQ-GFVRLIDDQTFEVLHSYRLDPFESPCSVIV 799          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D0MTY9_PHYIT (DNA damage-binding protein 1 n=8 Tax=Peronosporaceae TaxID=4777 RepID=D0MTY9_PHYIT)

HSP 1 Score: 181 bits (459), Expect = 3.900e-49
Identity = 95/197 (48.22%), Postives = 124/197 (62.94%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
            RSV+  T     YL VGLGDG ++++ L+V      ALGT K+V+LG+QP+ L+ FR+  M  VF A DRP VIY +  KLLY+N+N  EVN +C FDS   P CLAL+SE  LTIGT+DDIQKLHIQ   L E  +RI H       G++T S+  V+++ EE +  FV+  DD  FE L+ + LD FE    V V
Sbjct:  601 RSVLCNTFEGKDYLLVGLGDGSLMNYELDVQQG---ALGTRKRVSLGSQPLSLSTFRSKNMTHVFAACDRPTVIYSNNNKLLYSNINSKEVNVMCPFDSESFPECLALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLTVSF-TVDDTGEEVDQGFVRLFDDQTFEVLHSYRLDPFETPCSVVV 793          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A392Q1E5_9FABA (Damaged DNA-binding protein 1A (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392Q1E5_9FABA)

HSP 1 Score: 166 bits (421), Expect = 5.180e-49
Identity = 89/180 (49.44%), Postives = 114/180 (63.33%), Query Frame = 1
Query:   43 YLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVG 582
            YL   LGDGH+++F L     ST  L   KKV+LGTQP+ L  F +     VF ASDRP VIY S  KLLY+NVN+ EV+ +C F+S+  P  LA+A E  LTIGTIDDIQKLHI+ + LGE  +RI H +  R F I +  Y     S EE E++FV+ LDD  F+ +  +PLD +E G
Sbjct:    3 YLLCALGDGHLLNFMLNT---STGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFAICSLKYNPA--SAEESENHFVRLLDDQTFDFISVYPLDTYEYG 177          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A421F2I9_9STRA (DNA damage-binding protein 1 n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2I9_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.400e-48
Identity = 95/197 (48.22%), Postives = 122/197 (61.93%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAV 597
            RSV+  T     YL VGLGDG +++F L V       LGT K+V+LG+QP+ L+ FR+  M  VF A DRP VIY +  KLLY+N+N  EVN +C FDS   P CLAL+SE  LTIGT+DDIQKLHIQ   L E  +RI H       G++T S+  V+++ EE +  FV+  DD  FE L+ + LD FE    V V
Sbjct:  601 RSVLCNTFEGRDYLLVGLGDGSLMNFELNVAQGK---LGTRKRVSLGSQPLSLSTFRSKNMTHVFAACDRPTVIYSNNNKLLYSNINSKEVNVMCPFDSESFPECLALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLTLSF-TVDDTGEEVDQGFVRLFDDQTFEVLHSYRLDPFETPCSVVV 793          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: D8RBA1_SELML (Uncharacterized protein DDB1-1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RBA1_SELML)

HSP 1 Score: 179 bits (454), Expect = 1.790e-48
Identity = 95/195 (48.72%), Postives = 122/195 (62.56%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
            RSV++     V YL   LGDGH+ +F ++    S   L   KK++LGTQP+ L  FR+     VF ASDRP VIY S  KLLY+NVN+ EVN +C F+S+  P  LA+  E  LTIGTIDDIQKLHI+ V+LGE P+RI H +  R FG+ T  + +  N ++ E H FVK LDD  FE L  + LD FE G  +
Sbjct:  583 RSVLICAFEGVSYLLCALGDGHLFNFLIDT---SNGQLSDRKKISLGTQPIMLRTFRSKNATHVFAASDRPTVIYSSNKKLLYSNVNLKEVNHMCPFNSASFPDSLAIGKEGELTIGTIDDIQKLHIRTVALGEHPRRICHQEQTRTFGLCTARFYSNPNGEDHESH-FVKLLDDQTFEVLGSYNLDTFENGCTI 773          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: UPI001BF6B0F6 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF6B0F6)

HSP 1 Score: 178 bits (452), Expect = 2.020e-48
Identity = 94/195 (48.21%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
            RSV+L     + YL   LGDGH+++F L     ST  L   KKV+LGTQP+ L  F +     VF ASDRP VIY S  KLLY+NVN+ EV+ +C F+S+  P  LA+A E  LTIGTIDDIQKLHI+ + LGE P+RI H +  R F I +  Y   ++S E+ E +F++ LDD  FE +  +PLD FE G  +
Sbjct:  341 RSVLLCAFEGISYLLCALGDGHLLNFLLNT---STGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHPRRICHQEQSRTFAICSVKYN--QSSPEDSEMHFIRLLDDQTFEFVSTYPLDTFEYGCSI 530          
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Match: A0A835LC34_9MAGN (DNA damage-binding protein 1 n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A835LC34_9MAGN)

HSP 1 Score: 179 bits (453), Expect = 2.330e-48
Identity = 96/195 (49.23%), Postives = 123/195 (63.08%), Query Frame = 1
Query:    7 RSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGTQPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFDSSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRV 591
            RSV+L     V YL   LGDGH+ +F L +   ST  L   KKV+LGTQP+ L  F +     VF ASDRP VIY S  KLLY+NVN+ EV+ +C F+S+  P  LA+A E+ LTIGTIDDIQKLHI+ + LGE P+RI H +  R F I    Y   ++S EE E +FV+ LDD  FE +  +PLD +E G  +
Sbjct:  583 RSVLLCAFEGVSYLLCALGDGHLFNFLLNL---STGELSDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEDELTIGTIDDIQKLHIRTIPLGEQPRRIAHQEQSRTFAICCMKYG--QSSTEESEMHFVRLLDDQTFEFISTYPLDTYEYGCSI 772          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYT6_ECTSI3.680e-12697.97N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYT6_ECT... [more]
A0A7S3XKT9_HETAK6.560e-6151.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
I2CQY4_NANGC4.780e-5150.99Dna damage-binding protein 1a (Fragment) n=1 Tax=N... [more]
A0A5D6Y169_9STRA3.880e-4948.22DNA damage-binding protein 1 n=1 Tax=Pythium brass... [more]
D0MTY9_PHYIT3.900e-4948.22DNA damage-binding protein 1 n=8 Tax=Peronosporace... [more]
A0A392Q1E5_9FABA5.180e-4949.44Damaged DNA-binding protein 1A (Fragment) n=1 Tax=... [more]
A0A421F2I9_9STRA1.400e-4848.22DNA damage-binding protein 1 n=4 Tax=Phytophthora ... [more]
D8RBA1_SELML1.790e-4848.72Uncharacterized protein DDB1-1 n=2 Tax=Selaginella... [more]
UPI001BF6B0F62.020e-4848.21Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A835LC34_9MAGN2.330e-4849.23DNA damage-binding protein 1 n=2 Tax=Mesangiosperm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig119contigE-siliculosus-1a_F_contig119:82865..84080 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size612
Model size612
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG1897@1,KOG1897@2759
EggNOG free text desc.damaged DNA binding
GOsGO:0000003,GO:0000151,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010498,GO:0019538,GO:0019941,GO:0022414,GO:0030163,GO:0031461,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0061458,GO:0071704,GO:0080008,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
KEGG ModuleM00385,M00386
KEGG Pathwayko03420,ko04120,ko05161,ko05203,map03420,map04120,map05161,map05203
KEGG koko:K10610
Preferred nameDDB1A
Seed eggNOG ortholog2880.D7FYT6
Seed ortholog evalue1.6e-106
Seed ortholog score392.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig119.1218.1prot_E-siliculosus-1a_F_contig119.1218.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig119 82865..84080 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927708.6376247-CDS-E-siliculosus-1a_F_contig119:82864..829881622927708.6376247-CDS-E-siliculosus-1a_F_contig119:82864..82988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 82865..82988 -
1696318648.2455735-CDS-E-siliculosus-1a_F_contig119:82864..829881696318648.2455735-CDS-E-siliculosus-1a_F_contig119:82864..82988Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 82865..82988 -
1622927708.6532645-CDS-E-siliculosus-1a_F_contig119:83195..832931622927708.6532645-CDS-E-siliculosus-1a_F_contig119:83195..83293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83196..83293 -
1696318648.2570212-CDS-E-siliculosus-1a_F_contig119:83195..832931696318648.2570212-CDS-E-siliculosus-1a_F_contig119:83195..83293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83196..83293 -
1622927708.673414-CDS-E-siliculosus-1a_F_contig119:83551..836651622927708.673414-CDS-E-siliculosus-1a_F_contig119:83551..83665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83552..83665 -
1696318648.2666078-CDS-E-siliculosus-1a_F_contig119:83551..836651696318648.2666078-CDS-E-siliculosus-1a_F_contig119:83551..83665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83552..83665 -
1622927708.6852841-CDS-E-siliculosus-1a_F_contig119:83804..840801622927708.6852841-CDS-E-siliculosus-1a_F_contig119:83804..84080Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83805..84080 -
1696318648.2761467-CDS-E-siliculosus-1a_F_contig119:83804..840801696318648.2761467-CDS-E-siliculosus-1a_F_contig119:83804..84080Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 83805..84080 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig119.1218.1

>prot_E-siliculosus-1a_F_contig119.1218.1 ID=prot_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=204bp
QARSVILATIADVHYLFVGLGDGHVVSFPLEVTAESTLALGTPKKVALGT
QPVGLACFRNNGMVCVFVASDRPAVIYCSGGKLLYANVNMGEVNSVCSFD
SSELPHCLALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMF
GIITTSYRAVENSDEEEEHNFVKFLDDTNFEELYCHPLDAFEVGHRVAVH
EPC*
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mRNA from alignment at E-siliculosus-1a_F_contig119:82865..84080-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig119.1218.1 ID=mRNA_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:82865..84080- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCCGCTCTGTGATTCTGGCGACCATTGCTGATGTACACTACCTTTT CGTCGGCTTGGGTGATGGCCATGTAGTTTCGTTCCCTCTCGAGGTGACTG CCGAGTCAACGCTGGCATTGGGGACGCCAAAGAAGGTGGCCCTGGGAACT CAGCCAGTAGGACTTGCCTGTTTCCGCAACAACGGAATGGTGTGTGTCTT CGTCGCCAGCGACCGCCCTGCGGTCATCTACTGCAGCGGAGGCAAGCTCC TCTACGCCAACGTCAACATGGGCGAGGTGAGGATAAGCAGCTGTTGCTCT TGCCTGTTCTTGCGCCGCGAAAACACCTTTTCATTTTCGTGTATGCTGAT CATGAACGCAATTTCCCGTTGTAGTCCAAAACATGCCCGTTTGTTGACTG CTTTTTTTCTGGCAGGTCAACTCCGTGTGCTCTTTCGACTCCAGTGAGCT CCCCCACTGTTTGGCATTGGCGAGTGAAAACAGCTTGACCATCGGCACCA TCGATGACATCCAGAAGCTTCATATCCAGGTGAGAACGCCATCAGACCGT TGAACACCCAACGAAGTGTTGCTCAGCTCGGCCTGAGCAGCTCTCGACGT GGATTACAAAAAAAGTGGGGGGGGACGTGGTTTGCGTTTGGAGCACCGAT GTTTACAAAATCGCCGTCCATGCTGTTTAAAGGGAGAGGATTTTTGTTGA ACTGCTGTTCCAGACTTGCGCGCAACTAATCAGCTTCGAAGGTGGTCAGT ACTGTTTTCGTCTGCTCACGGGCCCCTCTTTGTACAGAAAGTCAGCCTTG GAGAAGCACCGCAGCGTATCACCCACCACGATTCGGGCCGGATGTTTGGT ATCATCACCACCAGCTACCGTGCGGTGGAGAACAGGTACGCACACGCGCC ACGAATGTCTTGTCGCCCACTTGTTACCCTGGAGCCAAAAATCATTCCGT CACTTGTGTTGGATCAAGGAAACAGCGTCTTCTCTTGTGAAGGATTTGTA CAGGCTGCCGCATTGCATGGTAGTGTCAACGTGCTGCTGTTCGATAGTGT AAAATTGATGTGCCGCGTTTCCGCCTCTTTGCCTTGCTTTAGCGACGAGG AGGAAGAGCACAACTTCGTCAAGTTTTTGGACGACACGAACTTCGAAGAG CTGTACTGCCATCCCCTCGACGCATTCGAGGTAGGGCACAGAGTTGCTGT TCACGAGCCATGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:82865..84080-

>mRNA_E-siliculosus-1a_F_contig119.1218.1 ID=mRNA_E-siliculosus-1a_F_contig119.1218.1|Name=mRNA_E-siliculosus-1a_F_contig119.1218.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:82865..84080- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCCGCTCTGTGATTCTGGCGACCATTGCTGATGTACACTACCTTTT
CGTCGGCTTGGGTGATGGCCATGTAGTTTCGTTCCCTCTCGAGGTGACTG
CCGAGTCAACGCTGGCATTGGGGACGCCAAAGAAGGTGGCCCTGGGAACT
CAGCCAGTAGGACTTGCCTGTTTCCGCAACAACGGAATGGTGTGTGTCTT
CGTCGCCAGCGACCGCCCTGCGGTCATCTACTGCAGCGGAGGCAAGCTCC
TCTACGCCAACGTCAACATGGGCGAGCAGGCCCGCTCTGTGATTCTGGCG
ACCATTGCTGATGTACACTACCTTTTCGTCGGCTTGGGTGATGGCCATGT
AGTTTCGTTCCCTCTCGAGGTGACTGCCGAGTCAACGCTGGCATTGGGGA
CGCCAAAGAAGGTGGCCCTGGGAACTCAGCCAGTAGGACTTGCCTGTTTC
CGCAACAACGGAATGGTGTGTGTCTTCGTCGCCAGCGACCGCCCTGCGGT
CATCTACTGCAGCGGAGGCAAGCTCCTCTACGCCAACGTCAACATGGGCG
AGGTCAACTCCGTGTGCTCTTTCGACTCCAGTGAGCTCCCCCACTGTTTG
GCATTGGCGAGTGAAAACAGCTTGACCATCGGCACCATCGATGACATCCA
GAAGCTTCATATCCAGGTCAACTCCGTGTGCTCTTTCGACTCCAGTGAGC
TCCCCCACTGTTTGGCATTGGCGAGTGAAAACAGCTTGACCATCGGCACC
ATCGATGACATCCAGAAGCTTCATATCCAGAAAGTCAGCCTTGGAGAAGC
ACCGCAGCGTATCACCCACCACGATTCGGGCCGGATGTTTGGTATCATCA
CCACCAGCTACCGTGCGGTGGAGAACAGAAAGTCAGCCTTGGAGAAGCAC
CGCAGCGTATCACCCACCACGATTCGGGCCGGATGTTTGGTATCATCACC
ACCAGCTACCGTGCGGTGGAGAACAGCGACGAGGAGGAAGAGCACAACTT
CGTCAAGTTTTTGGACGACACGAACTTCGAAGAGCTGTACTGCCATCCCC
TCGACGCATTCGAGGTAGGGCACAGAGTTGCTGTTCACGAGCCATGCTGA
CGACGAGGAGGAAGAGCACAACTTCGTCAAGTTTTTGGACGACACGAACT
TCGAAGAGCTGTACTGCCATCCCCTCGACGCATTCGAGGTAGGGCACAGA
GTTGCTGTTCACGAGCCATGCTGA
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