mRNA_E-siliculosus-1a_F_contig119.1210.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig119.1210.1
Unique NamemRNA_E-siliculosus-1a_F_contig119.1210.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 4.550e-68
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 1 
Query:   91 MATPVGTGPIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN 438
            MATPVGTGPIVQDVAPKGGFPK+QISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN
Sbjct:    1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN 116
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: D7FYS8_ECTSI (RNA binding motif and ELMO/CED-12 domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS8_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.880e-31
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = -1 
Query: 1221 QVRARVETDSHVLVKAYRTYLLEEKARSAVSIVDKTGGSAAVQEQFSGGGKLAEDGPLVAHVKDTASRKNTYLS 1442
            +VRARVETDSHVLVKAYRTYLLEEKARSAVSIVDKTG SAAVQEQFSGGGKLAEDGP VAHVKDTASRKNTYLS
Sbjct:  478 KVRARVETDSHVLVKAYRTYLLEEKARSAVSIVDKTGESAAVQEQFSGGGKLAEDGPPVAHVKDTASRKNTYLS 551
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A5J4XG14_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG14_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 3.550e-15
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEELN*CGAVW 456
            P++QD  P GGFP ++ +R++PS  GP G  +  +    MA G+ K+GQ N  RRA + EK+ AR A+MP+LQAEEDR+ V A     + +K L +++  +K  E+L   G  W
Sbjct:   19 PVLQDGPPPGGFPSVRYARRIPS-TGPAGFTLFAVTASIMAYGFIKVGQTNHERRAAKAEKKAARFAIMPILQAEEDRRYVQANEAFIRKEKELMKNVPGYKAGEQLY-SGGRW 130
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A087SFV8_AUXPR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFV8_AUXPR)

HSP 1 Score: 79.7 bits (195), Expect = 4.160e-14
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 435
            PIVQD  P GGFP ++ +R+LP+  GP G  + G+    MA G+Y++GQ N  RR E+ EK  +R AL+P LQAEEDR+ V A     + QK + ++   +K EE +
Sbjct:   19 PIVQDGPPPGGFPAVRYARRLPNS-GPAGFTLFGVGAAVMAYGFYQVGQGNIKRRDEKREKLDSRRALVPFLQAEEDRRWVAANEEFQKKQKEIMKNHPEYKAEESV 124
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO)

HSP 1 Score: 79.7 bits (195), Expect = 4.270e-14
Identity = 40/102 (39.22%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWK 420
            P++QD  P GGFP I+I+R++P+  GP G+ + G+  + M+ G+Y +GQ N  RRA++ E+   R AL+P LQAEEDR+ + AK+   + +  + + ++ W+
Sbjct:   19 PVLQDGPPPGGFPSIRIARRIPN-TGPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEEDRRYLKAKKQLLEKEASIMKDVDGWE 119
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: I0YQ01_COCSC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YQ01_COCSC)

HSP 1 Score: 76.3 bits (186), Expect = 6.810e-13
Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 435
            P++QD  P GGFP I+ +R++PS  GP G  +  +    MA G+Y++G+ N+ RRA + EK   R A+ P+LQAEEDR+ V AK+ + + +  + + +  W+  + +
Sbjct:   19 PVLQDGPPPGGFPSIRYARRIPS-TGPTGFTLFAVGAAVMAFGFYRVGEFNRYRRALKAEKMTMRTAIYPVLQAEEDRRWVQAKKQSVENEAKIMKDVPGWEAGQSV 124
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A2P6VLY9_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLY9_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 8.830e-13
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 435
            P+VQD  P GGFP  + +R++PS  GP G  +       MA G+YK+GQ+N+ RRA++     AR AL+P LQAEEDR+ V A +     Q+G+ +++  +   E +
Sbjct:   19 PVVQDGPPPGGFPSFRYARRVPS-TGPSGITLFAAGAAVMAFGFYKVGQSNRERRAQKAANLAARAALVPFLQAEEDRRWVNANQTFLARQEGIMKNVPEYTAGESV 124
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A2P6U3A2_CHLSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3A2_CHLSO)

HSP 1 Score: 75.9 bits (185), Expect = 9.280e-13
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLA 363
            PIVQD  P GGFP I+ +R++PS  GP G  +  +    MA G+YK+GQ+N+ RR E+ E   AR AL+P LQAEEDR+ V A
Sbjct:   19 PIVQDGPPPGGFPAIRYARRVPS-TGPSGFTLFAVGAAVMAYGFYKVGQSNRQRRGEKAEHFGARAALVPFLQAEEDRRWVNA 100
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT)

HSP 1 Score: 74.7 bits (182), Expect = 2.470e-12
Identity = 38/84 (45.24%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:  118 IVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKR 369
            ++QD  P GGFP ++I+R++P+  GP G+ V G+  + ++ G+Y +GQ N  +RA++ EK   R AL+P+LQAEEDR+ V AK+
Sbjct:   22 LLQDGPPAGGFPSVRIARRIPN-TGPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFVAAKK 104
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Match: A0A388KNK5_CHABU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNK5_CHABU)

HSP 1 Score: 73.2 bits (178), Expect = 8.330e-12
Identity = 39/107 (36.45%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:  115 PIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 435
            P++QD  P GGFP I+ +R++P+  GP G VV  +    ++ G Y++GQ N  RRA + EK  AR+A++P++QAEED +   A++     ++ + +++  WK  E +
Sbjct:   19 PVLQDGPPPGGFPAIRYARKIPN-TGPSGVVVFSIAAAVISYGMYQVGQGNLHRRALKKEKMEARMAILPLIQAEEDVRYAKARQKALAEEEKIMQNVPGWKVGESV 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS9_ECTSI4.550e-6899.14NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
D7FYS8_ECTSI4.880e-3195.95RNA binding motif and ELMO/CED-12 domain n=1 Tax=E... [more]
A0A5J4XG14_9CHLO3.550e-1541.23NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A087SFV8_AUXPR4.160e-1443.93NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A061QUA6_9CHLO4.270e-1439.22NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
I0YQ01_COCSC6.810e-1337.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6VLY9_9CHLO8.830e-1340.19NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2P6U3A2_CHLSO9.280e-1351.81NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3CKE5_9SPIT2.470e-1245.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A388KNK5_CHABU8.330e-1236.45NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig119contigE-siliculosus-1a_F_contig119:12974..17930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size351
Model size1523
Exons3
Ec32 orthologEc-19_002380.1
Ec32 ortholog descriptionGRIM-19
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsKOG3300@1,KOG3300@2759
EggNOG free text desc.cellular response to interferon-beta
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
KEGG ModuleM00146
KEGG Pathwayko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165
KEGG TC3.D.1.6
KEGG koko:K11353,ko:K14009
Preferred nameNDUFA13
Seed eggNOG ortholog2880.D7FYS9
Seed ortholog evalue7.2e-56
Seed ortholog score223.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig119.1210.1prot_E-siliculosus-1a_F_contig119.1210.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig119 14056..17840 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.3522613-UTR-E-siliculosus-1a_F_contig119:12973..140551622927706.3522613-UTR-E-siliculosus-1a_F_contig119:12973..14055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 12974..14055 -
1696318647.0648272-UTR-E-siliculosus-1a_F_contig119:12973..140551696318647.0648272-UTR-E-siliculosus-1a_F_contig119:12973..14055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 12974..14055 -
1622927706.3983703-UTR-E-siliculosus-1a_F_contig119:17840..179301622927706.3983703-UTR-E-siliculosus-1a_F_contig119:17840..17930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 17841..17930 -
1696318647.106901-UTR-E-siliculosus-1a_F_contig119:17840..179301696318647.106901-UTR-E-siliculosus-1a_F_contig119:17840..17930Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig119 17841..17930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.3632185-CDS-E-siliculosus-1a_F_contig119:14055..141631622927706.3632185-CDS-E-siliculosus-1a_F_contig119:14055..14163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 14056..14163 -
1696318647.077367-CDS-E-siliculosus-1a_F_contig119:14055..141631696318647.077367-CDS-E-siliculosus-1a_F_contig119:14055..14163Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 14056..14163 -
1622927706.373834-CDS-E-siliculosus-1a_F_contig119:14980..151571622927706.373834-CDS-E-siliculosus-1a_F_contig119:14980..15157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 14981..15157 -
1696318647.0891998-CDS-E-siliculosus-1a_F_contig119:14980..151571696318647.0891998-CDS-E-siliculosus-1a_F_contig119:14980..15157Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 14981..15157 -
1622927706.3844059-CDS-E-siliculosus-1a_F_contig119:17774..178401622927706.3844059-CDS-E-siliculosus-1a_F_contig119:17774..17840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 17775..17840 -
1696318647.0979-CDS-E-siliculosus-1a_F_contig119:17774..178401696318647.0979-CDS-E-siliculosus-1a_F_contig119:17774..17840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 17775..17840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig119.1210.1

>prot_E-siliculosus-1a_F_contig119.1210.1 ID=prot_E-siliculosus-1a_F_contig119.1210.1|Name=mRNA_E-siliculosus-1a_F_contig119.1210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp
MATPVGTGPIVQDVAPKGGFPKIQISRQLPSGRGPRGSVVLGLVTVTMAV
GYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQK
GLHESLNAWKEEEELN*
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mRNA from alignment at E-siliculosus-1a_F_contig119:12974..17930-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig119.1210.1 ID=mRNA_E-siliculosus-1a_F_contig119.1210.1|Name=mRNA_E-siliculosus-1a_F_contig119.1210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4957bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:12974..17930- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCAAGCTGCAAGGCAGGCAAGGTCACCCGCGCGAACTCCGCACGGAGGG
AGGGAAAGGAAGGACAGGCAACGATAGCAAGCAGCGGAACATGGCGACGC
CGGTAGGCACCGGGCCAATCGTGCAGGATGTCGCGCCCAAGGGTGGATTC
CCGAAGGTACGCGAAACGCTAAAATGTCCACTGCTGATGAAACAACTTGT
TGTGCACAACACCTCTTCTGATGTCTGCGCTCACGGGACTTGGCATGATA
TACTGATGTTTGCGTGTCGGTATTGGACGTGCTTGAAGGCTGCGCTTCGA
CTGTGGTCGGAGGGAAGACTGGTTACAAGTCAGGCCAATTGATTTGCTTC
AAATGTGTGCACAGGTGCAGTAGTCAACCGGAAGCACACAGTCCGGTTCG
TTCGCACTACAACACATCCCGCCGTGTGTGCGTGCATGCAAAACGCGATT
GGGTCTGCTGGGAACACAACGGTTTGCTTCAGGCTCAGGCCTTTGTTGAC
ATGGAGCACGTAGTCTCGTGTAGTAACAGCATCTTGGTGCCGTTGGGCTG
GAGGGTGTTTGACAGGGCCTTCGCAAGTGCGGAACTGCTGTTAGATTAAA
CTCAGTGACAAGATGTGAAAGCCGGTTCGATTCGCAGCTACCGCACTTAC
GAGGCTCCGAAGACTTGTCCCCCAGCACATGGCCAGGGGTCCGGCCCCGG
AGATGACTGTCGTAGCTGCGAGGGCCTGAGAGCCCGAGGCACATTATTTG
TTGAGAAAGGCTAATCCATTAGGCTTCTCAGTCAGCAACGATGGGAGGTT
GTGCAAGTCTCGCACAATCGGTGCTAGTAGGGAGGGGTCGTGAACCGCGG
GGTACGACTCAATACCTGACCGTAGTACATCTGCGATGCTGTGCAAGGTG
CGGGACACGCTGCTTCCAGGCAGCAACGCAGCAAAACCCAGAACGGGCAC
TTCATTCCTTGCGGTATATTTTCGACTAGATCTTCCAAAGGACTGGTGCA
TCCGCTCCCGCTGGAAGTTTGAAATGTTACACATCAACGGCGGAGGAGCG
CACCACACATGCTCGCCCTCTCCTACAGAGTAGCGCAGCACCGACAAACG
ATCGGCACCTCACAGCACTGCCGCCAACATACCTGCACTATTTAGTGCTG
CTGCTGCCGCTTTGATGGCAGTGACTCCCGTCCGTCTTATTTCACCCATC
ATGACGACCAAACCGTTGTGACAAAGAGCGCGCTATTTTTCGTCTTCCTC
AGACGTGAACAGATCGTCAAATCCGTGTCGTAAAGGTCCTGGTTAGGTCC
CTACGGTTGTTTTTTTTTGGCTTCCCGGAAATCAAACTTTGGGCCCCTGC
ATCACGATTGGAACCAGAGATCGATATTTAGAGGCGTTTTTTCCGAAATT
GCGGCTTCGCCGCGATGCGGCTCAATAAATCTCAATCAAGCGAAACAAAG
ACATGCCCTTTATGGGCTCGTTGGCCCTCCCAGCTACGGCAGTGATATCC
GGGGCCGGACCCCTCCTCGCCATGCGCTGCTGGAAAGTCTTGATCTGCGG
ATGCACGGCATTGGATTTCCCCGACCTTGACGTTTGCGAAGGCGTCTTAA
CGTCTTTACGGTAGACATTCGCGTAGGTTAACACGGGATACTGATACTGT
AGACGTTGAATCCTTCGCCAGGCATCTAATTGTGTCTCGTGAACTGCCCG
TTGGTTCCAATAGCGCTGTAGGGGCTGAGCGTGAGAGCGTCCCACCCGTT
GGTGCCACCAGCGTAGTACCTGAGAATGTCCCTGACTTGGGGAAGTGTCA
TCTTACTACATATTCAACTATCGTCGGCGTCAATTGAGGCGGGCAGGCGT
GCTGACCACCGATCTTGGTTTGGACTAATATTGGTGTAAGATCGCCTGAG
GAACACCCAGCAATCACAGGAGTGCGAGATGCATGCGAATGCATAAATCA
AACCAAGTAGTTCAAGATTTTGAAGAGGCACTTAACAACTCTGTTGTCTG
ACAGAGGTGTGGTTGGGGCTTGTCTCCTCCAGCATGTGACGCAGTGTACC
TCCACACACACACACCCTCTCAGACCAAGGAAGAAGTTCCACGAGTCAAT
TGCATCAGGCCGAAAAAGAAGAAACACGAGTGCTCGTAAAATGGTCTTCC
GCGTGTCGGAGTCTCAACCTGCATCCCATATCAGTGCCGGACATCGTGGA
GGAGCGACGCGCATGTCGGCAAGCTCAGATCTGCTTTCGAGGCTGTGATA
GCTGTGCTATCGAACGCTATAGCTGCGGCCCGAAAAGTCCGCACATCTCG
GTCCACTATTCATGTTTCACTGCCGAACTGGCCGTCACAGACCCGATTTT
ACACAACTGCAGGTCTACGTACAGCAGCACACACATAGCTCATTTTACGT
GCGTACAACTAGCTGCCTTTGACAAACCACACTCCGGGAAATTGGGGCTT
GTAGCGGCTAGTCAAAGGGTGGTTTGATCCAGGTTTGCGGAGTTTGAACC
CAGCTGTAGTCTTCGGTGTCACAATCCCAGCATAACATGTGAGCGACATG
TCGCTCAAGACGAAAGTGGATCTCTCATTCCGCGGAGCCTCTGATGTGTG
GAACAATGTGTCATCGAAACGGGGAGTTTCAAAAAGAAAAATTGTCACCA
CGATTGGCACTTGGTTGCAAAGCAGTCTCTAGTGCGCTAATGAAGAGTCA
CCTACAACACATCGGTGGGTTTTCGCGCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCGTTCGTTAGATCCAAATATCGCGGCAATTGCCATCG
GGCCGAGGACCGCGCGGGTCTGTCGTTCTAGGCCTTGTGACGGTCACGAT
GGCCGTTGGTTACTACAAGCTCGGACAAGCGAACAAGGCGCGGCGAGCAG
AGCAGCACGAGAAGCGCCTGGCCCGAATCGCGTTGATGCCGATGCTTCAG
GTGAGCGGGAGGGTGACTTTTGTTTCTTGGCACCGCATATAAGCGAGAAG
AGGGATTTAATCGTCATGGCTCAGTCAAAAGCGGATTGGCGGATGTAGGC
TCAGGTTCACGTTGTGAACTGTGAGCTTGCTGCATGTTTGGTTCTTGCAG
TATTTTTGTTTCTACTTCTGTTGCCATATTTTACGAAGGCGATGTTATGG
CTGAGCACAAGTGCCCGACCCGCACAGGAAAGCTTCGTGTTCATCTCAAC
TCGTGTTGTCTTGCACCACGGACTTTTGGCTTTGTCATTATCCCCCTGGT
TAGTTTCGCGCGATGAAGCACCTCGAACTTGTTTCTATTATAGTCCAATT
TTCTCGCTTGTCCGGCCAGTTCCCAAGAAATTGATGGCCGCGTGTATGGC
AAGCACTGCTGGCGTTCGGACCTTTTTGTGTTGAAAATGTGTCTCGTTCT
TCAACACCGTCAAGAATAGTGTTTCGAGCCATGCACCAAGAGTCTCCGTA
TCTTGGTTGTTTTCCCCATAAGGGACTTCCACGACGAAAAAATAATGTAC
AGGTCGTTCCTCCCCGCAGCAGAACCGAACGCTTTGTTGTTTCACGAACA
AGAGATGTCCGAGGGACACCCGTTGTTCGTTGGGAAGGCATTCATTTCCG
GCGCTTGACACGAAGTCAAACCTTTCGTAAAGGCGGCAGAGCGGAATATT
ACCCTCGAATGCGGAGGCAAATTCTACACGCCGTGAGCTTACGTAACTAC
TGTCTTTTCGCCGTCTATTTACGGGGTATGTCTCGTTTCGTTTACGTCTG
TGTCGTGCGTTTGCCAGGCGGAAGAGGACAGGAAAGCCGTACTAGCCAAG
CGCTTTAACGCCCAGCTTCAGAAAGGCCTCCACGAATCCCTCAACGCTTG
GAAGGAGGAAGAAGAATTGAATTAGTGCGGAGCGGTCTGGAGAGGGAGGA
GGGGGGGGGGCTTGAGGTATCGATTTGCGCGATTTCGCTGACTAGGTTGC
ATTTTTTCGTGCGATGCCGCAGATTTTGGCAGTTGCAGAGGAGAAGGGAG
TTAGGGACATGGTGGATTTCCTGGTGTAGATTTACGCCTACAAAGGATTT
GAATTACCTTGTTCGCTCAGCCTACGCAGACGCTAAAGATCGAGATGGAG
GGCGCGCGAAGGGAGAGTGGACAGACAGGTATTGGAGGAAATATGTTTCA
TGCGAGACAATCCCGTGTGGGCTGTTGGTCTCTTGTCAGAGAATAAGAGA
CGACTTGTGAGCTGGCGGGCGTAGCGTGTGCAAGCTATTGCGTGCGCAGA
GTTTAGTTGCGTGGTACCAGGTACAAAATGGTTGAGGCGGCCTGATGTCG
TGTGTCCACACCGTTGGTCGTTTAGATTATGCCTTCACCGTTCTCCTCAA
GGCAGCACGCCATACTACAGCAGCGTAGAGCGACATTGTTGCGTCGTTTA
TCAAATCAGGATCTTGGTTCAGCACACGGTGTTGACTGCGCATCACAACC
TGTGTGCTGGTCCCGATGTGGTTTTTGGTTTGGCATTTCCAATTTTCGAA
AAATCGGTGGAGTTTTTTGTGTCTTAATGGCCCACTATAATGAAGCACTT
GCTGAATTCAGACGCCAATGTGGCACATGGTTTGTGTCCGGTGACGTCTA
CCGAGCATATTCTATTTTCGTTCGCAATCCCGCTGGGTTGGTGTTGTCTT
GTTACGACAGGTAGGTATTTTTGCGACTGGCTGTGTCCTTCACGTGTGCC
ACTAGCGGTCCATCTTCGGCCAGCTTCCCCCCACCGGAGAATTGCTCCTG
TACCGCCGCACTCCCTCCCGTCTTGTCCACAATGCTAACCGCAGACCGAG
CCTTCTCCTCCAAGAGATATGTTCGGTAAGCCTTCACCAGCACGTGGGAA
TCGGTTTCTACCCTTGCGCGAACCTGTATTGTAGTGGAGGTGAAGAGGCC
GATCGCGATTTTTTCGTCAACACGAGCGTCACGTGTGTGACTCGATGGCA
ATAGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:12974..17930-

>mRNA_E-siliculosus-1a_F_contig119.1210.1 ID=mRNA_E-siliculosus-1a_F_contig119.1210.1|Name=mRNA_E-siliculosus-1a_F_contig119.1210.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:12974..17930- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGACGCCGGTAGGCACCGGGCCAATCGTGCAGGATGTCGCGCCCAA
GGGTGGATTCCCGAAGATGGCGACGCCGGTAGGCACCGGGCCAATCGTGC
AGGATGTCGCGCCCAAGGGTGGATTCCCGAAGATCCAAATATCGCGGCAA
TTGCCATCGGGCCGAGGACCGCGCGGGTCTGTCGTTCTAGGCCTTGTGAC
GGTCACGATGGCCGTTGGTTACTACAAGCTCGGACAAGCGAACAAGGCGC
GGCGAGCAGAGCAGCACGAGAAGCGCCTGGCCCGAATCGCGTTGATGCCG
ATGCTTCAGATCCAAATATCGCGGCAATTGCCATCGGGCCGAGGACCGCG
CGGGTCTGTCGTTCTAGGCCTTGTGACGGTCACGATGGCCGTTGGTTACT
ACAAGCTCGGACAAGCGAACAAGGCGCGGCGAGCAGAGCAGCACGAGAAG
CGCCTGGCCCGAATCGCGTTGATGCCGATGCTTCAGGCGGAAGAGGACAG
GAAAGCCGTACTAGCCAAGCGCTTTAACGCCCAGCTTCAGAAAGGCCTCC
ACGAATCCCTCAACGCTTGGAAGGAGGAAGAAGAATTGAATTAGGCGGAA
GAGGACAGGAAAGCCGTACTAGCCAAGCGCTTTAACGCCCAGCTTCAGAA
AGGCCTCCACGAATCCCTCAACGCTTGGAAGGAGGAAGAAGAATTGAATT
AG
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