mRNA_E-siliculosus-1a_F_contig11880.1201.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11880.1201.1
Unique NamemRNA_E-siliculosus-1a_F_contig11880.1201.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11880.1201.1 vs. uniprot
Match: D7FXC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC9_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 6.360e-151
Identity = 219/244 (89.75%), Postives = 227/244 (93.03%), Query Frame = 1 
Query:    1 KEEVPDFTDRTKWYRERVFTFADGGEYTAKDQYAAVKRLHKEHGVGGHVVHAARVSAAQEDARNRVPPGETQAVTHMKDINGGALGTTTLVYRPLSAQSALSQSGAVGPGESSTTAAYYNPRQHVEVPDGLVKHVLPRFMDVRRQLCDGKEKGEGHMTERGTLDLVEYLRLVLVRGAVELQEEFPENWLLKRFPFNSREFLEWAPVARNEIRQLRASDVKSRLHYQASPAIISELSRLNAKVGT 732
            +++ P FTDRTKWYRERVFTFADGGEYTAKD+YAAVKRLHKEH VGGHVVHAARVSA QE ARNRVPPGETQAVT MKDINGGALGTTTLVYRPLSAQSALSQSGAVGPGESS TAAYYNPRQHV+VPDGLV HVLPRFMDVRRQL DGKE+GEGHMTERGT+D VEYLRLVLVRGAVELQEE PENWLLKRFPFNSREFLE APVARNEIRQLR SD KSR HY+ASPA ISELSRLNAKV T
Sbjct:   81 RKKSPTFTDRTKWYRERVFTFADGGEYTAKDEYAAVKRLHKEHSVGGHVVHAARVSATQEGARNRVPPGETQAVTRMKDINGGALGTTTLVYRPLSAQSALSQSGAVGPGESSATAAYYNPRQHVDVPDGLVNHVLPRFMDVRRQLFDGKERGEGHMTERGTVDPVEYLRLVLVRGAVELQEELPENWLLKRFPFNSREFLERAPVARNEIRQLRPSDDKSRPHYKASPATISELSRLNAKVFT 324
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11880.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXC9_ECTSI6.360e-15189.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11880contigE-siliculosus-1a_F_contig11880:267..1138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size756
Model size756
Exons2
Ec32 orthologEc-04_000170.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927704.8233747-CDS-E-siliculosus-1a_F_contig11880:266..8281622927704.8233747-CDS-E-siliculosus-1a_F_contig11880:266..828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11880 267..828 -
1696318646.4168246-CDS-E-siliculosus-1a_F_contig11880:266..8281696318646.4168246-CDS-E-siliculosus-1a_F_contig11880:266..828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11880 267..828 -
1622927704.8402255-CDS-E-siliculosus-1a_F_contig11880:944..11381622927704.8402255-CDS-E-siliculosus-1a_F_contig11880:944..1138Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11880 945..1138 -
1696318646.426108-CDS-E-siliculosus-1a_F_contig11880:944..11381696318646.426108-CDS-E-siliculosus-1a_F_contig11880:944..1138Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11880 945..1138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11880.1201.1prot_E-siliculosus-1a_F_contig11880.1201.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11880 267..1138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11880.1201.1

>prot_E-siliculosus-1a_F_contig11880.1201.1 ID=prot_E-siliculosus-1a_F_contig11880.1201.1|Name=mRNA_E-siliculosus-1a_F_contig11880.1201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=252bp
KEEVPDFTDRTKWYRERVFTFADGGEYTAKDQYAAVKRLHKEHGVGGHVV
HAARVSAAQEDARNRVPPGETQAVTHMKDINGGALGTTTLVYRPLSAQSA
LSQSGAVGPGESSTTAAYYNPRQHVEVPDGLVKHVLPRFMDVRRQLCDGK
EKGEGHMTERGTLDLVEYLRLVLVRGAVELQEEFPENWLLKRFPFNSREF
LEWAPVARNEIRQLRASDVKSRLHYQASPAIISELSRLNAKVGTPLFVPA
Y*
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mRNA from alignment at E-siliculosus-1a_F_contig11880:267..1138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11880.1201.1 ID=mRNA_E-siliculosus-1a_F_contig11880.1201.1|Name=mRNA_E-siliculosus-1a_F_contig11880.1201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=872bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11880:267..1138- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGAAGAAGTCCCCGACTTCACCGACAGAACCAAGTGGTACCGGGAGCG
CGTATTCACATTCGCCGACGGAGGTGAATATACCGCGAAAGACCAGTACG
CAGCAGTCAAGAGGCTACACAAGGAGCACGGTGTCGGCGGCCACGTTGTC
CACGCGGCCCGCGTCTCGGCGGCCCAAGAGGATGCTCGCAACAGGTGGGC
ATGTCAAAGAGGTGCCTTGAATAAAGATGATCACCCGTCGTCACGGATTC
TACCATCACGAGTTTACTCTTCCCGTCCCCGCGTGATGTTATGCTCGATT
GCGCCTCCAGAGTTCCTCCTGGTGAGACTCAGGCGGTAACGCACATGAAG
GACATCAACGGCGGAGCTTTGGGAACTACCACTCTCGTGTATCGTCCGCT
GAGCGCACAGAGCGCCCTGTCGCAATCAGGTGCCGTTGGTCCCGGAGAAA
GTTCAACCACCGCTGCCTACTACAACCCTCGCCAGCATGTCGAGGTGCCC
GACGGTTTGGTGAAACATGTCTTGCCCCGCTTCATGGATGTTCGTCGGCA
ACTGTGTGACGGCAAGGAAAAAGGGGAGGGACACATGACTGAACGAGGCA
CGCTTGATCTCGTTGAGTATCTACGGCTAGTGCTTGTGCGCGGGGCCGTT
GAGCTGCAGGAGGAATTTCCAGAGAACTGGCTTCTCAAAAGGTTTCCGTT
CAACTCACGGGAATTTCTTGAGTGGGCACCTGTAGCACGGAACGAGATAC
GTCAACTGCGCGCATCCGATGTCAAGTCACGGCTCCACTACCAGGCGTCT
CCTGCAATCATCAGTGAACTCTCGCGTCTGAACGCCAAGGTGGGTACACC
ACTCTTTGTTCCAGCGTACTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11880:267..1138-

>mRNA_E-siliculosus-1a_F_contig11880.1201.1 ID=mRNA_E-siliculosus-1a_F_contig11880.1201.1|Name=mRNA_E-siliculosus-1a_F_contig11880.1201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1512bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11880:267..1138- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGAAGAAGTCCCCGACTTCACCGACAGAACCAAGTGGTACCGGGAGCG
CGTATTCACATTCGCCGACGGAGGTGAATATACCGCGAAAGACCAGTACG
CAGCAGTCAAGAGGCTACACAAGGAGCACGGTGTCGGCGGCCACGTTGTC
CACGCGGCCCGCGTCTCGGCGGCCCAAGAGGATGCTCGCAACAGAAGGAA
GAAGTCCCCGACTTCACCGACAGAACCAAGTGGTACCGGGAGCGCGTATT
CACATTCGCCGACGGAGGTGAATATACCGCGAAAGACCAGTACGCAGCAG
TCAAGAGGCTACACAAGGAGCACGGTGTCGGCGGCCACGTTGTCCACGCG
GCCCGCGTCTCGGCGGCCCAAGAGGATGCTCGCAACAGAGTTCCTCCTGG
TGAGACTCAGGCGGTAACGCACATGAAGGACATCAACGGCGGAGCTTTGG
GAACTACCACTCTCGTGTATCGTCCGCTGAGCGCACAGAGCGCCCTGTCG
CAATCAGGTGCCGTTGGTCCCGGAGAAAGTTCAACCACCGCTGCCTACTA
CAACCCTCGCCAGCATGTCGAGGTGCCCGACGGTTTGGTGAAACATGTCT
TGCCCCGCTTCATGGATGTTCGTCGGCAACTGTGTGACGGCAAGGAAAAA
GGGGAGGGACACATGACTGAACGAGGCACGCTTGATCTCGTTGAGTATCT
ACGGCTAGTGCTTGTGCGCGGGGCCGTTGAGCTGCAGGAGGAATTTCCAG
AGAACTGGCTTCTCAAAAGGTTTCCGTTCAACTCACGGGAATTTCTTGAG
TGGGCACCTGTAGCACGGAACGAGATACGTCAACTGCGCGCATCCGATGT
CAAGTCACGGCTCCACTACCAGGCGTCTCCTGCAATCATCAGTGAACTCT
CGCGTCTGAACGCCAAGGTGGGTACACCACTCTTTGTTCCAGCGTACTAG
AGTTCCTCCTGGTGAGACTCAGGCGGTAACGCACATGAAGGACATCAACG
GCGGAGCTTTGGGAACTACCACTCTCGTGTATCGTCCGCTGAGCGCACAG
AGCGCCCTGTCGCAATCAGGTGCCGTTGGTCCCGGAGAAAGTTCAACCAC
CGCTGCCTACTACAACCCTCGCCAGCATGTCGAGGTGCCCGACGGTTTGG
TGAAACATGTCTTGCCCCGCTTCATGGATGTTCGTCGGCAACTGTGTGAC
GGCAAGGAAAAAGGGGAGGGACACATGACTGAACGAGGCACGCTTGATCT
CGTTGAGTATCTACGGCTAGTGCTTGTGCGCGGGGCCGTTGAGCTGCAGG
AGGAATTTCCAGAGAACTGGCTTCTCAAAAGGTTTCCGTTCAACTCACGG
GAATTTCTTGAGTGGGCACCTGTAGCACGGAACGAGATACGTCAACTGCG
CGCATCCGATGTCAAGTCACGGCTCCACTACCAGGCGTCTCCTGCAATCA
TCAGTGAACTCTCGCGTCTGAACGCCAAGGTGGGTACACCACTCTTTGTT
CCAGCGTACTAG
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