mRNA_E-siliculosus-1a_F_contig11875.1197.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11875.1197.1
Unique NamemRNA_E-siliculosus-1a_F_contig11875.1197.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11875.1197.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 1.240e-143
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 1 
Query:   25 MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR 714
            MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKE YAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR
Sbjct:    1 MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR 230
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BLAST of mRNA_E-siliculosus-1a_F_contig11875.1197.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 4.250e-121
Identity = 200/241 (82.99%), Postives = 210/241 (87.14%), Query Frame = 1 
Query:    1 ILKERSLGMHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMEN-QPLSV--IFKGVHQAPFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR 714
            +LKERSLGMHYI LERLINTSHARQISQ+SVKLLQQSIQSQDFME+ +P +   I +G   A F      ++     L      VA KAV PGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTAL+DLVESEDKS+DLNLVTLAYISK DFMALSAEEQGFNLQILAR
Sbjct:   65 MLKERSLGMHYILLERLINTSHARQISQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSA-FHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFMALSAEEQGFNLQILAR 304
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BLAST of mRNA_E-siliculosus-1a_F_contig11875.1197.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.120e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:  499 AKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR 714
            AKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR
Sbjct:   20 AKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFMALSAEEQGFNLQILAR 91
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11875.1197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN26_9PHAE1.240e-14399.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G124_ECTSI4.250e-12182.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJG8_ECTSI3.120e-33100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11875contigE-siliculosus-1a_F_contig11875:430..1650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size693
Model size717
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11875.1197.1prot_E-siliculosus-1a_F_contig11875.1197.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11875 454..1650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927704.154817-UTR-E-siliculosus-1a_F_contig11875:429..4531622927704.154817-UTR-E-siliculosus-1a_F_contig11875:429..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11875 430..453 +
1696318646.0288677-UTR-E-siliculosus-1a_F_contig11875:429..4531696318646.0288677-UTR-E-siliculosus-1a_F_contig11875:429..453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11875 430..453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927704.1696038-CDS-E-siliculosus-1a_F_contig11875:453..7691622927704.1696038-CDS-E-siliculosus-1a_F_contig11875:453..769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 454..769 +
1696318646.0377696-CDS-E-siliculosus-1a_F_contig11875:453..7691696318646.0377696-CDS-E-siliculosus-1a_F_contig11875:453..769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 454..769 +
1622927704.1896324-CDS-E-siliculosus-1a_F_contig11875:1035..11931622927704.1896324-CDS-E-siliculosus-1a_F_contig11875:1035..1193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 1036..1193 +
1696318646.048806-CDS-E-siliculosus-1a_F_contig11875:1035..11931696318646.048806-CDS-E-siliculosus-1a_F_contig11875:1035..1193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 1036..1193 +
1622927704.2017596-CDS-E-siliculosus-1a_F_contig11875:1431..16501622927704.2017596-CDS-E-siliculosus-1a_F_contig11875:1431..1650Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 1432..1650 +
1696318646.0580163-CDS-E-siliculosus-1a_F_contig11875:1431..16501696318646.0580163-CDS-E-siliculosus-1a_F_contig11875:1431..1650Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11875 1432..1650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11875.1197.1

>prot_E-siliculosus-1a_F_contig11875.1197.1 ID=prot_E-siliculosus-1a_F_contig11875.1197.1|Name=mRNA_E-siliculosus-1a_F_contig11875.1197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=231bp
MHYIALERLINTSHARQISQKSVKLLQQSIQSQDFMENQPLSVIFKGVHQ
APFTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVK
RIVADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQVNPK
DIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDL
NLVTLAYISKDDFMALSAEEQGFNLQILAR*
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mRNA from alignment at E-siliculosus-1a_F_contig11875:430..1650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11875.1197.1 ID=mRNA_E-siliculosus-1a_F_contig11875.1197.1|Name=mRNA_E-siliculosus-1a_F_contig11875.1197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1221bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11875:430..1650+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCCTGAAGGAGCGTAGCCTCGGGATGCACTACATCGCACTGGAAAGGCT
GATCAACACGAGCCACGCTCGGCAGATTAGCCAAAAGAGCGTGAAGCTCC
TTCAACAATCGATCCAGTCCCAGGACTTCATGGAGAACCAGCCGCTTTCT
GTGATATTCAAAGGGGTTCATCAAGCGCCTTTCACACAAGAGGATGCCGA
CAAAGCCGGGCCCGCCAGCGTCTTGGACGGGAACCATCGTTTAGTAGCCC
TCAAGGCCGTCAAGCCTGGTGATTTTCTGGTCCCGTGCCAATGCTACTCG
GACATCAAGGACGCAAACGTGAAGAGGATAGTGGCAGATGGTGAGTTCAT
GGCTGTTGCTAGACTAAACATGATGTTTGTTGTAGTGTTGGCGCAGTAGT
ATGCATACATACCACGGTATCTTACGGGTCCTACGGCTTTCTTGCTGCTG
CTGCTGAATCGTTCGTATTGACGTATCCGAAAACGACTAGGGGGTCGATG
TTTGACGATGTCCACACACACATATACTTGGAACAATACACCATTATCTC
ACTCAACATTCAAGTGCTCTGACCTTTTTTCCTGTTTGTTCTTTACTACT
CCTCAGCGTGCAATGATGCCACCTCGACGTTCGCCGAACGCACTATCTAC
GATCGGCTGTACTTCTTCAGCTCCCTCTACAAGGGAGCACAGGCTTCCCT
GGAAACGTCGCGGTCCCGTAGTAGGCAAGTGAACCCCAAGGACATCAAGG
AATTATACGCGAAGGTAAGCACGTGTTTGGTGATAAGATGATCATGAAAA
GTCAACAACAACGCTATATCGAACAGATGTTCTTCACCGATCGACGTAGT
AGTGGTATCGTTTTGTTGTGTGGAATACTCTGTGTACTTGCCGTAGCTCA
TGCGGTAGTAGTACATACTAATTGCACAATTACCCCCGCTCAATGGTTTG
TGTATCAGCAGCAGCATCAGTAACTATCTGGTTGTCGCTTTCGCTTCTTC
AGGCAAAGCAGGCGGTCCCCAGCGACTCCACGCTTCGCAGCTGGCTGAAG
GCCGTGAGGGGCATCAAAGAGGAAGCACTCACCGCCCTAAAGGACCTGGT
CGAGTCCGAAGATAAGTCCATCGACCTCAACCTCGTCACCCTAGCTTACA
TCAGCAAGGATGACTTCATGGCGCTTTCAGCTGAGGAGCAGGGCTTCAAT
CTACAGATCCTGGCCAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11875:430..1650+

>mRNA_E-siliculosus-1a_F_contig11875.1197.1 ID=mRNA_E-siliculosus-1a_F_contig11875.1197.1|Name=mRNA_E-siliculosus-1a_F_contig11875.1197.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1386bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11875:430..1650+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACTACATCGCACTGGAAAGGCTGATCAACACGAGCCACGCTCGGCA
GATTAGCCAAAAGAGCGTGAAGCTCCTTCAACAATCGATCCAGTCCCAGG
ACTTCATGGAGAACCAGCCGCTTTCTGTGATATTCAAAGGGGTTCATCAA
GCGCCTTTCACACAAGAGGATGCCGACAAAGCCGGGCCCGCCAGCGTCTT
GGACGGGAACCATCGTTTAGTAGCCCTCAAGGCCGTCAAGCCTGGTGATT
TTCTGGTCCCGTGCCAATGCTACTCGGACATCAAGGACGCAAACGTGAAG
AGGATAGTGGCAGATGATGCACTACATCGCACTGGAAAGGCTGATCAACA
CGAGCCACGCTCGGCAGATTAGCCAAAAGAGCGTGAAGCTCCTTCAACAA
TCGATCCAGTCCCAGGACTTCATGGAGAACCAGCCGCTTTCTGTGATATT
CAAAGGGGTTCATCAAGCGCCTTTCACACAAGAGGATGCCGACAAAGCCG
GGCCCGCCAGCGTCTTGGACGGGAACCATCGTTTAGTAGCCCTCAAGGCC
GTCAAGCCTGGTGATTTTCTGGTCCCGTGCCAATGCTACTCGGACATCAA
GGACGCAAACGTGAAGAGGATAGTGGCAGATGCGTGCAATGATGCCACCT
CGACGTTCGCCGAACGCACTATCTACGATCGGCTGTACTTCTTCAGCTCC
CTCTACAAGGGAGCACAGGCTTCCCTGGAAACGTCGCGGTCCCGTAGTAG
GCAAGTGAACCCCAAGGACATCAAGGAATTATACGCGAAGCGTGCAATGA
TGCCACCTCGACGTTCGCCGAACGCACTATCTACGATCGGCTGTACTTCT
TCAGCTCCCTCTACAAGGGAGCACAGGCTTCCCTGGAAACGTCGCGGTCC
CGTAGTAGGCAAGTGAACCCCAAGGACATCAAGGAATTATACGCGAAGGC
AAAGCAGGCGGTCCCCAGCGACTCCACGCTTCGCAGCTGGCTGAAGGCCG
TGAGGGGCATCAAAGAGGAAGCACTCACCGCCCTAAAGGACCTGGTCGAG
TCCGAAGATAAGTCCATCGACCTCAACCTCGTCACCCTAGCTTACATCAG
CAAGGATGACTTCATGGCGCTTTCAGCTGAGGAGCAGGGCTTCAATCTAC
AGATCCTGGCCAGGTAAGCAAAGCAGGCGGTCCCCAGCGACTCCACGCTT
CGCAGCTGGCTGAAGGCCGTGAGGGGCATCAAAGAGGAAGCACTCACCGC
CCTAAAGGACCTGGTCGAGTCCGAAGATAAGTCCATCGACCTCAACCTCG
TCACCCTAGCTTACATCAGCAAGGATGACTTCATGGCGCTTTCAGCTGAG
GAGCAGGGCTTCAATCTACAGATCCTGGCCAGGTAA
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