mRNA_E-siliculosus-1a_F_contig11862.1195.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11862.1195.1
Unique NamemRNA_E-siliculosus-1a_F_contig11862.1195.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11862.1195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11862contigE-siliculosus-1a_F_contig11862:1301..1642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size342
Model size343
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.757189-CDS-E-siliculosus-1a_F_contig11862:1300..16421622927703.757189-CDS-E-siliculosus-1a_F_contig11862:1300..1642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11862 1301..1642 +
1696318645.7715719-CDS-E-siliculosus-1a_F_contig11862:1300..16421696318645.7715719-CDS-E-siliculosus-1a_F_contig11862:1300..1642Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11862 1301..1642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11862.1195.1prot_E-siliculosus-1a_F_contig11862.1195.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11862 1301..1642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11862.1195.1

>prot_E-siliculosus-1a_F_contig11862.1195.1 ID=prot_E-siliculosus-1a_F_contig11862.1195.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
RPANTHTRLARTGQKCPWLHSEHLHVRSERKQHPRSSHTRAGGWMPTHRT
HPSCELLLYPPLQPTITSLHGDIHTQPNNNGQHTAVYTNWHPPLLRHGLE
IVKGGEEGAAAPL*
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mRNA from alignment at E-siliculosus-1a_F_contig11862:1301..1642+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11862.1195.1 ID=mRNA_E-siliculosus-1a_F_contig11862.1195.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11862:1301..1642+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCCCGCAAATACACACACACGACTCGCACGAACCGGGCAAAAGTGTCC
TTGGCTGCACAGCGAGCACCTTCATGTGCGCTCCGAAAGAAAGCAGCACC
CCCGAAGCTCGCACACACGCGCGGGCGGATGGATGCCTACCCACCGTACC
CACCCGTCTTGCGAGCTACTACTGTACCCTCCCCTGCAACCAACAATCAC
TTCGCTTCATGGTGACATCCACACACAACCTAACAACAACGGACAACACA
CGGCTGTCTACACAAACTGGCACCCACCACTCTTAAGACATGGGTTGGAA
ATAGTTAAGGGGGGAGAAGAGGGGGCGGCGGCTCCGTTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11862:1301..1642+

>mRNA_E-siliculosus-1a_F_contig11862.1195.1 ID=mRNA_E-siliculosus-1a_F_contig11862.1195.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1195.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11862:1301..1642+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCCCCGCAAATACACACACACGACTCGCACGAACCGGGCAAAAGTGTCC
TTGGCTGCACAGCGAGCACCTTCATGTGCGCTCCGAAAGAAAGCAGCACC
CCCGAAGCTCGCACACACGCGCGGGCGGATGGATGCCTACCCACCGTACC
CACCCGTCTTGCGAGCTACTACTGTACCCTCCCCTGCAACCAACAATCAC
TTCGCTTCATGGTGACATCCACACACAACCTAACAACAACGGACAACACA
CGGCTGTCTACACAAACTGGCACCCACCACTCTTAAGACATGGGTTGGAA
ATAGTTAAGGGGGGAGAAGAGGGGGCGGCGGCTCCGTTGTGACGCCCCGC
AAATACACACACACGACTCGCACGAACCGGGCAAAAGTGTCCTTGGCTGC
ACAGCGAGCACCTTCATGTGCGCTCCGAAAGAAAGCAGCACCCCCGAAGC
TCGCACACACGCGCGGGCGGATGGATGCCTACCCACCGTACCCACCCGTC
TTGCGAGCTACTACTGTACCCTCCCCTGCAACCAACAATCACTTCGCTTC
ATGGTGACATCCACACACAACCTAACAACAACGGACAACACACGGCTGTC
TACACAAACTGGCACCCACCACTCTTAAGACATGGGTTGGAAATAGTTAA
GGGGGGAGAAGAGGGGGCGGCGGCTCCGTTGTGA
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