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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11862.1194.1 vs. uniprot
Match: D8LMN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN0_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 3.500e-15 Identity = 40/55 (72.73%), Postives = 42/55 (76.36%), Query Frame = 3
Query: 42 MQFSDEARHASKHHHHPCQQPYEKISNTPLDKIRWARHAQQGRPPPSYYSMGEYA 206
MQFS EARHAS + +KISNTPLDKIRWARHAQQ RPPP YYSMGEYA
Sbjct: 1 MQFSGEARHASNVNITRANNRIKKISNTPLDKIRWARHAQQERPPPFYYSMGEYA 55
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1026 |
| Model size | 1185 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927703.7134326-CDS-E-siliculosus-1a_F_contig11862:229..1255 | 1622927703.7134326-CDS-E-siliculosus-1a_F_contig11862:229..1255 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig11862 230..1255 + |
| 1696318645.756558-CDS-E-siliculosus-1a_F_contig11862:229..1255 | 1696318645.756558-CDS-E-siliculosus-1a_F_contig11862:229..1255 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig11862 230..1255 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11862.1194.1 >prot_E-siliculosus-1a_F_contig11862.1194.1 ID=prot_E-siliculosus-1a_F_contig11862.1194.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp
MGSACPTRAAAPFLLFNGGICLTKLTKIKRHANCIDSPLEEEKKEEGHMG
RWKRSRRSARHRLRLHPPLPTDKTHKYRLFPSDSLEPPFAIKKEKQTSLK
KRHGPAKQLYRIQQLVAKTQTSSSRSYARRRRRPRPSHQQPWNVLLRKSN
RRTRVVRQSRNPNHQSTNLPHPPTRKSKACSCSRGHSATRTNESPGEWRQ
RTHQNQTPPTASRTPAYLPACLFSALRARFYDRQTPSSPDSTTREGENTD
TDTHTHTHIRARVLHTQDTQTKHNHQHTPFQEVATAALHLCFRGAPPNPL
RISFTVLEWRTGRRDCGYLQINAAKPTRTVLSGHTHMRTPK* back to topmRNA from alignment at E-siliculosus-1a_F_contig11862:88..1272+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig11862.1194.1 ID=mRNA_E-siliculosus-1a_F_contig11862.1194.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1185bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11862:88..1272+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TAATAACACCGCCAAATAACCGAACTCCCGTATCACGAACAATGCAATTT
TCGGACGAGGCCCGCCACGCATCAAAACATCACCACCACCCCTGCCAACA
ACCGTATGAAAAAATCAGCAACACACCACTGGATAAGATAAGATGGGCTC
GGCATGCCCAACAAGGGCGGCCGCCCCCTTCCTACTATTCAATGGGGGAA
TATGCCTAACAAAGTTAACAAAAATCAAGAGACACGCAAATTGTATTGAT
TCCCCTCTTGAAGAGGAAAAAAAGGAGGAGGGGCATATGGGCCGCTGGAA
AAGGTCACGTCGGTCGGCTCGGCATCGTTTACGTCTACATCCTCCATTGC
CAACAGACAAAACACACAAGTATCGTTTGTTCCCGTCCGACTCTCTCGAA
CCCCCCTTCGCAATAAAAAAAGAAAAACAGACAAGCTTAAAAAAACGCCA
CGGGCCAGCCAAACAGCTATACAGGATCCAGCAGCTGGTAGCGAAGACGC
AAACCAGTTCAAGTCGGAGCTACGCACGCCGGCGGCGTCGACCACGACCA
TCTCACCAACAACCATGGAATGTACTCCTACGCAAATCGAACCGGCGCAC
GAGGGTCGTTCGCCAATCAAGAAATCCAAACCACCAGTCAACCAACCTAC
CCCACCCCCCCACACGCAAGAGCAAGGCTTGCTCCTGCTCGCGGGGCCAC
TCGGCAACAAGAACAAATGAAAGCCCGGGCGAGTGGCGACAACGCACGCA
CCAAAACCAAACGCCGCCGACTGCCTCGAGAACGCCTGCCTACCTGCCTG
CCTGCTTGTTTTCCGCTTTGAGGGCGAGATTCTATGACCGGCAAACTCCC
TCCTCTCCCGACTCGACAACAAGAGAGGGAGAAAACACAGACACCGACAC
ACACACACACACACACATCCGCGCGCGGGTATTACACACACAAGACACAC
AAACGAAACACAACCATCAACACACCCCTTTTCAGGAGGTAGCCACGGCG
GCACTGCACCTCTGCTTTCGGGGGGCACCGCCGAATCCTTTGCGCATATC
GTTTACTGTACTGGAATGGAGGACGGGAAGAAGGGACTGCGGCTACCTGC
AAATCAACGCTGCTAAACCGACGCGGACGGTATTATCTGGGCACACGCAT
ATGCGTACGCCAAAATAGCACCATTGAACAACCAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11862:88..1272+ >mRNA_E-siliculosus-1a_F_contig11862.1194.1 ID=mRNA_E-siliculosus-1a_F_contig11862.1194.1|Name=mRNA_E-siliculosus-1a_F_contig11862.1194.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11862:88..1272+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCTCGGCATGCCCAACAAGGGCGGCCGCCCCCTTCCTACTATTCAA
TGGGGGAATATGCCTAACAAAGTTAACAAAAATCAAGAGACACGCAAATT
GTATTGATTCCCCTCTTGAAGAGGAAAAAAAGGAGGAGGGGCATATGGGC
CGCTGGAAAAGGTCACGTCGGTCGGCTCGGCATCGTTTACGTCTACATCC
TCCATTGCCAACAGACAAAACACACAAGTATCGTTTGTTCCCGTCCGACT
CTCTCGAACCCCCCTTCGCAATAAAAAAAGAAAAACAGACAAGCTTAAAA
AAACGCCACGGGCCAGCCAAACAGCTATACAGGATCCAGCAGCTGGTAGC
GAAGACGCAAACCAGTTCAAGTCGGAGCTACGCACGCCGGCGGCGTCGAC
CACGACCATCTCACCAACAACCATGGAATGTACTCCTACGCAAATCGAAC
CGGCGCACGAGGGTCGTTCGCCAATCAAGAAATCCAAACCACCAGTCAAC
CAACCTACCCCACCCCCCCACACGCAAGAGCAAGGCTTGCTCCTGCTCGC
GGGGCCACTCGGCAACAAGAACAAATGAAAGCCCGGGCGAGTGGCGACAA
CGCACGCACCAAAACCAAACGCCGCCGACTGCCTCGAGAACGCCTGCCTA
CCTGCCTGCCTGCTTGTTTTCCGCTTTGAGGGCGAGATTCTATGACCGGC
AAACTCCCTCCTCTCCCGACTCGACAACAAGAGAGGGAGAAAACACAGAC
ACCGACACACACACACACACACACATCCGCGCGCGGGTATTACACACACA
AGACACACAAACGAAACACAACCATCAACACACCCCTTTTCAGGAGGTAG
CCACGGCGGCACTGCACCTCTGCTTTCGGGGGGCACCGCCGAATCCTTTG
CGCATATCGTTTACTGTACTGGAATGGAGGACGGGAAGAAGGGACTGCGG
CTACCTGCAAATCAACGCTGCTAAACCGACGCGGACGGTATTATCTGGGC
ACACGCATATGCGTACGCCAAAATAGATGGGCTCGGCATGCCCAACAAGG
GCGGCCGCCCCCTTCCTACTATTCAATGGGGGAATATGCCTAACAAAGTT
AACAAAAATCAAGAGACACGCAAATTGTATTGATTCCCCTCTTGAAGAGG
AAAAAAAGGAGGAGGGGCATATGGGCCGCTGGAAAAGGTCACGTCGGTCG
GCTCGGCATCGTTTACGTCTACATCCTCCATTGCCAACAGACAAAACACA
CAAGTATCGTTTGTTCCCGTCCGACTCTCTCGAACCCCCCTTCGCAATAA
AAAAAGAAAAACAGACAAGCTTAAAAAAACGCCACGGGCCAGCCAAACAG
CTATACAGGATCCAGCAGCTGGTAGCGAAGACGCAAACCAGTTCAAGTCG
GAGCTACGCACGCCGGCGGCGTCGACCACGACCATCTCACCAACAACCAT
GGAATGTACTCCTACGCAAATCGAACCGGCGCACGAGGGTCGTTCGCCAA
TCAAGAAATCCAAACCACCAGTCAACCAACCTACCCCACCCCCCCACACG
CAAGAGCAAGGCTTGCTCCTGCTCGCGGGGCCACTCGGCAACAAGAACAA
ATGAAAGCCCGGGCGAGTGGCGACAACGCACGCACCAAAACCAAACGCCG
CCGACTGCCTCGAGAACGCCTGCCTACCTGCCTGCCTGCTTGTTTTCCGC
TTTGAGGGCGAGATTCTATGACCGGCAAACTCCCTCCTCTCCCGACTCGA
CAACAAGAGAGGGAGAAAACACAGACACCGACACACACACACACACACAC
ATCCGCGCGCGGGTATTACACACACAAGACACACAAACGAAACACAACCA
TCAACACACCCCTTTTCAGGAGGTAGCCACGGCGGCACTGCACCTCTGCT
TTCGGGGGGCACCGCCGAATCCTTTGCGCATATCGTTTACTGTACTGGAA
TGGAGGACGGGAAGAAGGGACTGCGGCTACCTGCAAATCAACGCTGCTAA
ACCGACGCGGACGGTATTATCTGGGCACACGCATATGCGTACGCCAAAAT
AG back to top
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