mRNA_E-siliculosus-1a_F_contig11856.1191.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11856.1191.1
Unique NamemRNA_E-siliculosus-1a_F_contig11856.1191.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11856.1191.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.840e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 2 
Query:    2 EGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQA 217
            EGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQA
Sbjct:  403 EGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQA 474
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BLAST of mRNA_E-siliculosus-1a_F_contig11856.1191.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 8.650e-39
Identity = 70/73 (95.89%), Postives = 70/73 (95.89%), Query Frame = 2 
Query:    2 EGEGGEERVVVLQEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAP 220
            EGEG EERVVVLQEEADREQCGWLFCCQ LPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLD ITRQQAP
Sbjct: 1752 EGEGAEERVVVLQEEADREQCGWLFCCQRLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDRITRQQAP 1824
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11856.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ23_ECTSI2.840e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I3_9PHAE8.650e-3995.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11856contigE-siliculosus-1a_F_contig11856:96..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size252
Model size255
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.329211-CDS-E-siliculosus-1a_F_contig11856:97..2431622927703.329211-CDS-E-siliculosus-1a_F_contig11856:97..243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11856 98..243 -
1696318645.5606332-CDS-E-siliculosus-1a_F_contig11856:97..2431696318645.5606332-CDS-E-siliculosus-1a_F_contig11856:97..243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11856 98..243 -
1622927703.3407912-CDS-E-siliculosus-1a_F_contig11856:548..6541622927703.3407912-CDS-E-siliculosus-1a_F_contig11856:548..654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11856 549..654 -
1696318645.569596-CDS-E-siliculosus-1a_F_contig11856:548..6541696318645.569596-CDS-E-siliculosus-1a_F_contig11856:548..654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11856 549..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11856.1191.1prot_E-siliculosus-1a_F_contig11856.1191.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11856 98..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11856.1191.1

>prot_E-siliculosus-1a_F_contig11856.1191.1 ID=prot_E-siliculosus-1a_F_contig11856.1191.1|Name=mRNA_E-siliculosus-1a_F_contig11856.1191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=84bp
GRGGGGGAGRRAAGGGRPGAVRVAVLLPKSSGVDSRGTAGCARGARFGLL
RDLRRPDPLLPSRARPYHAATSAATAKGATGVGR
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mRNA from alignment at E-siliculosus-1a_F_contig11856:96..654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11856.1191.1 ID=mRNA_E-siliculosus-1a_F_contig11856.1191.1|Name=mRNA_E-siliculosus-1a_F_contig11856.1191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=559bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11856:96..654- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAGGGGAGGGGGGGGAGGAGCGGGTCGTCGTGCTGCAGGAGGAGGCCG
ACCGGGAGCAGTGCGGGTGGCTGTTCTGCTGCCAAAGTCTTCCGGCGTGG
ACTCACGTGAGTTTGTTTTTTGTTTTAGGAGGAGGAGGAGGAGGAGGAGC
TGTGGCGGCGGCGACCGAAAAGTCGCATCGTGGACGAACCGCAGTGCGCG
TCTAGCTATTTTTTATGGGTGTATCGGAAGAATAGAGAGTGCCGCATGTA
AGCCCTTTCCTCCGTCTCGTGGAAGGTCGGACAGATCATGGGGGGAGACG
GAAGACCTTACGCGCGTACCATATGTTGCTGCCCCCCCCCCCTCTCCGGC
ACCTCCTGCTGCCGCAACGTGTGGTTAAACTTTCGCGTATCCCCACACCC
GCCGGCCACAGGTGGCACCGCTGGTTGTGCACGCGGTGCGCGATTCGGTC
TTCTACGAGACCTCCGCCGACCCGATCCGCTTCTCCCTTCTCGGGCTCGA
CCTTATCACGCGGCAACAAGCGCCGCCACCGCTAAGGGCGCCACCGGCGT
TGGACGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11856:96..654-

>mRNA_E-siliculosus-1a_F_contig11856.1191.1 ID=mRNA_E-siliculosus-1a_F_contig11856.1191.1|Name=mRNA_E-siliculosus-1a_F_contig11856.1191.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11856:96..654- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAAGGGGAGGGGGGGGAGGAGCGGGTCGTCGTGCTGCAGGAGGAGGCCG
ACCGGGAGCAGTGCGGGTGGCTGTTCTGCTGCCAAAGTCTTCCGGCGTGG
ACTCACGGAAGGGGAGGGGGGGGAGGAGCGGGTCGTCGTGCTGCAGGAGG
AGGCCGACCGGGAGCAGTGCGGGTGGCTGTTCTGCTGCCAAAGTCTTCCG
GCGTGGACTCACGTGGCACCGCTGGTTGTGCACGCGGTGCGCGATTCGGT
CTTCTACGAGACCTCCGCCGACCCGATCCGCTTCTCCCTTCTCGGGCTCG
ACCTTATCACGCGGCAACAAGCGCCGCCACCGCTAAGGGCGCCACCGGCG
TTGGACGAGTGGCACCGCTGGTTGTGCACGCGGTGCGCGATTCGGTCTTC
TACGAGACCTCCGCCGACCCGATCCGCTTCTCCCTTCTCGGGCTCGACCT
TATCACGCGGCAACAAGCGCCGCCACCGCTAAGGGCGCCACCGGCGTTGG
ACGA
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