mRNA_E-siliculosus-1a_F_contig11854.1190.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11854.1190.1
Unique NamemRNA_E-siliculosus-1a_F_contig11854.1190.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11854.1190.1 vs. uniprot
Match: A0A6H5JLD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.750e-19
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:  268 EEEEQSCSRQVGGFQESPGDVIVESPAKATTITELPKKAAAGGAAAVEGSCTRATP 435
            EEEEQ+C+RQVGGFQ SPGDVIVESPAK  TITEL +KAAAGG AAVEGSCT+  P
Sbjct:   42 EEEEQACNRQVGGFQGSPGDVIVESPAKTRTITELLEKAAAGGEAAVEGSCTKVAP 97
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11854.1190.1 vs. uniprot
Match: A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.960e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  414 ELYKGYTVDARNGHVVDLVSTKRNVPAQLKERTKGWDVVGVD 539
            ELYKGYTVDA NGHV DLV  +R+VPA+LKE+TKGWDVVGVD
Sbjct:  124 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVD 165
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11854.1190.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.590e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  414 ELYKGYTVDARNGHVVDLVSTKRNVPAQLKERTKGWDVVGVD 539
            ELYKGYTVDA NGHV DLV  +R+VPA+LKE+TKGWDVVGVD
Sbjct:  118 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVD 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11854.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLD5_9PHAE3.750e-1980.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK3_9PHAE6.960e-1480.95Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI3.590e-1380.95DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11854contigE-siliculosus-1a_F_contig11854:233..772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size501
Model size540
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.2736585-CDS-E-siliculosus-1a_F_contig11854:232..7331622927703.2736585-CDS-E-siliculosus-1a_F_contig11854:232..733Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11854 233..733 +
1696318645.541749-CDS-E-siliculosus-1a_F_contig11854:232..7331696318645.541749-CDS-E-siliculosus-1a_F_contig11854:232..733Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11854 233..733 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.28752-UTR-E-siliculosus-1a_F_contig11854:733..7721622927703.28752-UTR-E-siliculosus-1a_F_contig11854:733..772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11854 734..772 +
1696318645.551229-UTR-E-siliculosus-1a_F_contig11854:733..7721696318645.551229-UTR-E-siliculosus-1a_F_contig11854:733..772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11854 734..772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11854.1190.1prot_E-siliculosus-1a_F_contig11854.1190.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11854 233..733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11854.1190.1

>prot_E-siliculosus-1a_F_contig11854.1190.1 ID=prot_E-siliculosus-1a_F_contig11854.1190.1|Name=mRNA_E-siliculosus-1a_F_contig11854.1190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=167bp
YYSVCRQAAAVRGRRCFRNPPWRPHRPRLLLRLQQRSRLPLARRRRKRRP
QCRQNRPPAKTTGVPLRESLRRLKNRAQDEEACCLHCHCEEEEQSCSRQV
GGFQESPGDVIVESPAKATTITELPKKAAAGGAAAVEGSCTRATPLTPAT
ATWWTWSARRGTCRHS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11854:233..772+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11854.1190.1 ID=mRNA_E-siliculosus-1a_F_contig11854.1190.1|Name=mRNA_E-siliculosus-1a_F_contig11854.1190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=540bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11854:233..772+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACTACAGTGTGTGTCGGCAGGCGGCGGCGGTGCGAGGACGGCGGTGTTT
TCGCAACCCTCCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTGC
AACAAAGGTCAAGGTTGCCGCTGGCGCGGAGGAGACGAAAACGACGACCG
CAATGCCGGCAGAACCGCCCCCCTGCAAAAACCACTGGAGTACCACTACG
AGAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGTT
GCCTCCACTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCAAGTT
GGAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCAA
GGCTACGACAATCACGGAGCTCCCCAAGAAGGCCGCCGCTGGCGGCGCGG
CGGCGGTAGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAACG
GCCACGTGGTGGACCTGGTCAGCACGAAGAGGAACGTGCCGGCACAGTTG
AAGGAGAGGACCAAGGGCTGGGATGTGGTTGGCGTGGACG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11854:233..772+

>mRNA_E-siliculosus-1a_F_contig11854.1190.1 ID=mRNA_E-siliculosus-1a_F_contig11854.1190.1|Name=mRNA_E-siliculosus-1a_F_contig11854.1190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11854:233..772+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACTACAGTGTGTGTCGGCAGGCGGCGGCGGTGCGAGGACGGCGGTGTTT
TCGCAACCCTCCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTGC
AACAAAGGTCAAGGTTGCCGCTGGCGCGGAGGAGACGAAAACGACGACCG
CAATGCCGGCAGAACCGCCCCCCTGCAAAAACCACTGGAGTACCACTACG
AGAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGTT
GCCTCCACTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCAAGTT
GGAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCAA
GGCTACGACAATCACGGAGCTCCCCAAGAAGGCCGCCGCTGGCGGCGCGG
CGGCGGTAGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAACG
GCCACGTGGTGGACCTGGTCAGCACGAAGAGGAACGTGCCGGCACAGTTG
ATACTACAGTGTGTGTCGGCAGGCGGCGGCGGTGCGAGGACGGCGGTGTT
TTCGCAACCCTCCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTG
CAACAAAGGTCAAGGTTGCCGCTGGCGCGGAGGAGACGAAAACGACGACC
GCAATGCCGGCAGAACCGCCCCCCTGCAAAAACCACTGGAGTACCACTAC
GAGAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGT
TGCCTCCACTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCAAGT
TGGAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCA
AGGCTACGACAATCACGGAGCTCCCCAAGAAGGCCGCCGCTGGCGGCGCG
GCGGCGGTAGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAAC
GGCCACGTGGTGGACCTGGTCAGCACGAAGAGGAACGTGCCGGCACAGTT
GA
back to top