mRNA_E-siliculosus-1a_F_contig1185.1189.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1185.1189.1
Unique NamemRNA_E-siliculosus-1a_F_contig1185.1189.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1185contigE-siliculosus-1a_F_contig1185:32220..33120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size333
Model size333
Exons2
Ec32 orthologEc-14_000970.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927703.2237995-CDS-E-siliculosus-1a_F_contig1185:32219..323361622927703.2237995-CDS-E-siliculosus-1a_F_contig1185:32219..32336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1185 32220..32336 +
1696318645.5228915-CDS-E-siliculosus-1a_F_contig1185:32219..323361696318645.5228915-CDS-E-siliculosus-1a_F_contig1185:32219..32336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1185 32220..32336 +
1622927703.2351496-CDS-E-siliculosus-1a_F_contig1185:32904..331201622927703.2351496-CDS-E-siliculosus-1a_F_contig1185:32904..33120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1185 32905..33120 +
1696318645.5324454-CDS-E-siliculosus-1a_F_contig1185:32904..331201696318645.5324454-CDS-E-siliculosus-1a_F_contig1185:32904..33120Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1185 32905..33120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1185.1189.1prot_E-siliculosus-1a_F_contig1185.1189.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1185 32220..33120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1185.1189.1

>prot_E-siliculosus-1a_F_contig1185.1189.1 ID=prot_E-siliculosus-1a_F_contig1185.1189.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=111bp
QEEPFPLPDVVLCPSAGDGCDADDGLDCLPMNWYISTVEVVILMMIRVHH
LEILMAVLRQRLRRWWCRLSASKWRQGQTSCAREYPCRSAPLTTMVSRLG
MCTHYMLPFM*
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mRNA from alignment at E-siliculosus-1a_F_contig1185:32220..33120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1185.1189.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1189.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=901bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:32220..33120+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAGGAGCCTTTTCCACTACCGGATGTAGTGCTCTGCCCCTCAGCTGG
GGACGGCTGCGACGCCGACGATGGCTTGGACTGTTTGCCGATGAATTGGT
ACATATCGACTGTCGAGGTGAGCCCAGAAAGAGTTCAAAATAAATTGTTT
GCTCTCTGGTACGATGGAAACTTCGTGAAATACTGCGTCCAGCAACACCT
CTGTGGTTGTGTATTCAACGCTGAATACTGCTTTCGCCAAAAAGCTTGTT
TCGGATGGGAGCCCTACGGTTCCACCAATATTGTGGTTTAACTCTAAGCG
TGGGTGCTTTGAAACAACAACCTATCCCAAGCTTACTGCATGTTGCTAAG
ATGATTGTCCAACCATGCAATGTTGACAAGTATCCACCATGCATACACCT
TTTCTGCTTTTTGATTAGGGTTAGGGTCCGCGTGCTCGACGTTGAGCTGC
TAGACTTGACCGTTTTTCCGTCCCCACGTTCGCCGTGGGCCTTTGTCTTT
CGCACGTTCACGTGGCTCCTCGTCGACATGCGACGGAAAGGGACTTTCGG
GATGCAACGAGTACTTCGCGCCAACTCCCGCACCAACTCCCGCCCCAACA
CAGGCTCCGACTATCGCCCCCGCGGTGGATGCGGCGCCCCCGACCGGTGG
CTACTATTCTGATGATTTTTACTTGTATGGCTCAGGTCGTGATTTTGATG
ATGATTCGAGTACATCACCTGGAGATACTGATGGCGGTTTTGAGGCAACG
CCTTCGCCGGTGGTGGTGCCGTCTATCCGCGTCCAAGTGGCGACAAGGGC
AAACGAGTTGTGCCCGAGAGTACCCCTGTCGGAGTGCGCCATTGACTACG
ATGGTGTCGAGGCTGGGGATGTGCACTCACTACATGCTTCCTTTTATGTG
A
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1185:32220..33120+

>mRNA_E-siliculosus-1a_F_contig1185.1189.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1189.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1189.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:32220..33120+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGAGGAGCCTTTTCCACTACCGGATGTAGTGCTCTGCCCCTCAGCTGG
GGACGGCTGCGACGCCGACGATGGCTTGGACTGTTTGCCGATGAATTGGT
ACATATCGACTGTCGAGCAGGAGGAGCCTTTTCCACTACCGGATGTAGTG
CTCTGCCCCTCAGCTGGGGACGGCTGCGACGCCGACGATGGCTTGGACTG
TTTGCCGATGAATTGGTACATATCGACTGTCGAGGTCGTGATTTTGATGA
TGATTCGAGTACATCACCTGGAGATACTGATGGCGGTTTTGAGGCAACGC
CTTCGCCGGTGGTGGTGCCGTCTATCCGCGTCCAAGTGGCGACAAGGGCA
AACGAGTTGTGCCCGAGAGTACCCCTGTCGGAGTGCGCCATTGACTACGA
TGGTGTCGAGGCTGGGGATGTGCACTCACTACATGCTTCCTTTTATGTGA
GTCGTGATTTTGATGATGATTCGAGTACATCACCTGGAGATACTGATGGC
GGTTTTGAGGCAACGCCTTCGCCGGTGGTGGTGCCGTCTATCCGCGTCCA
AGTGGCGACAAGGGCAAACGAGTTGTGCCCGAGAGTACCCCTGTCGGAGT
GCGCCATTGACTACGATGGTGTCGAGGCTGGGGATGTGCACTCACTACAT
GCTTCCTTTTATGTGA
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