mRNA_E-siliculosus-1a_F_contig1185.1188.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1185.1188.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1185.1188.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 547 bits (1409), Expect = 3.850e-186
Identity = 273/284 (96.13%), Postives = 278/284 (97.89%), Query Frame = 1

Query:  163 QNRPRPSMMAANKNAPASPPIRKTTRTPIPTEPPQEKWREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSADRHGDLALPPSK 1014
            +NRP  S+MAANKNAPASPPIRKTTR PIPTEPPQEKWREQMEGIRS+RRSRDAAVDFAGAGALRDSSAG EDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVC+RLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGW+PREHWSEVN LLVGFGQQVCFAT PSCSACGISGLCPSADRHGDLALPPSK
Sbjct:    6 RNRPGLSIMAANKNAPASPPIRKTTRIPIPTEPPQEKWREQMEGIRSVRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATRPSCSACGISGLCPSADRHGDLALPPSK 289

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A5D6Y8M4_9STRA (Endonuclease III homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8M4_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.400e-67
Identity = 125/237 (52.74%), Postives = 151/237 (63.71%), Query Frame = 1

Query:  274 WREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSADR 984
            W++ +EGI++MR +  A VD  G    +  +     + RF  L+SAMLSSQTKDPV AA + R+        L   A+L   +DE  L + +HPV F + KAK+I  V   L     G     IPDT EGLL LPGVGPKM YLVMD AW    GICVDTHVHRISNRLGWV TWN+  PKAQ+PEKTR+ LQ W+PREHW  +N LLVGFGQ +C   +P C  C I+ LCPSA R
Sbjct:   90 WKQMLEGIQTMRAAGGAEVDSMGCEIYKKDTVPAH-EWRFHTLVSAMLSSQTKDPVNAAAMERLM--ARDGGLTVQAMLV--IDESELAQTIHPVGFYRNKAKYIKQVASILTARASGAAVVDIPDTFEGLLALPGVGPKMAYLVMDCAWSNVAGICVDTHVHRISNRLGWVTTWNKKNPKAQDPEKTRRELQDWLPREHWGPLNLLLVGFGQTICQPRAPKCDECSITHLCPSAHR 321

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: K3WGH9_GLOUD (Endonuclease III homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGH9_GLOUD)

HSP 1 Score: 233 bits (595), Expect = 3.120e-66
Identity = 125/244 (51.23%), Postives = 153/244 (62.70%), Query Frame = 1

Query:  274 WREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDV-----RFQVLMSAMLSSQTKDPVTAAGLNRM--RQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSADR 984
            W++ + GI+ MR  RDA VD  G     D      D V     RF  L+SAMLSSQTKDPV AA + R+  R+       G        +DE+ L +++HPV F + KAK+I  V E L +   G     IP T E L+ LPGVGPKM YLVMD AW    GICVDTHVHRISNRLGWV+TWN+  PKAQ+PEKTR  LQ W+P+EHW  +N LLVGFGQ +C   +P C+ C IS LCPSA++
Sbjct:   54 WKDMLLGIQEMRAKRDADVDTMGCETHVD------DKVAPHVWRFHTLVSAMLSSQTKDPVNAAAMERLIGREG------GLTVQTMRDIDENELAQIIHPVGFYRNKAKYIKQVAEILTKQAAGSDVVDIPSTFEDLVALPGVGPKMAYLVMDCAWNNVVGICVDTHVHRISNRLGWVNTWNKKNPKAQDPEKTRAELQDWLPQEHWGPINVLLVGFGQTICQPRNPKCTECKISHLCPSANK 285

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: H3G4Y0_PHYRM (Endonuclease III homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G4Y0_PHYRM)

HSP 1 Score: 228 bits (582), Expect = 5.540e-65
Identity = 121/238 (50.84%), Postives = 152/238 (63.87%), Query Frame = 1

Query:  274 WREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHI---LMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSA 978
            W+E + GI  MR ++DA VD  G     D S   + + RF VL++AM+SSQTKDPV AA + R+ +       G        +D+  L +L+ PV F   KAK+I   + +  + AEA DG+    IPDT EGL+ LPGVGPKM  LVM+ AW    GICVDTHVHRISNRL WV TWN+N PK+QNPEKTR  L+ W+P+EHW  +N LLVGFGQ +C    P CS C I G+CPSA
Sbjct:   17 WKEILRGIEEMRANKDAEVDKYGCEVFFDESFPPQ-ECRFHVLIAAMMSSQTKDPVNAAAMGRLIKH------GLTVESMLEIDQQELAQLIRPVGFFNHKAKYIKQTVAILRKQAEA-DGKDVVEIPDTYEGLIGLPGVGPKMATLVMNCAWNNAVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGVCPSA 246

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A6H5L2I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I5_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 4.940e-64
Identity = 124/131 (94.66%), Postives = 124/131 (94.66%), Query Frame = 1

Query:  187 MAANKNAPASPPIRKTTRTPIPTEPPQEKWREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKA 579
            MAANKNAPA    RKTTRTPIPTEPPQ KWREQMEGIRS RRSRDAAVDFAGAGALRDSSAG EDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKA
Sbjct:    1 MAANKNAPALA-TRKTTRTPIPTEPPQGKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKA 130

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: F0X2C6_9STRA (Endonuclease III homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2C6_9STRA)

HSP 1 Score: 228 bits (582), Expect = 5.350e-64
Identity = 120/242 (49.59%), Postives = 151/242 (62.40%), Query Frame = 1

Query:  262 PQEKWREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSADRH 987
            P   W E +  IR MR +  A VD  G+    D+        RF VL+SAMLSSQTKDP+ AA + R+        L   +++   + ED L ++++PVSF + KAK I  V   L E E       IP+TVE L+ LPGVGPKM YLVM+VAW +  GICVDTHVHRI NRLGWV TWN+  PKAQ+PEKTRK L+ W+P EHW  +N LLVGFGQ +C A  P C  C +  +CPSA ++
Sbjct:   82 PNVNWNEMLLKIREMRATMKAEVDEDGSETFYDTKHPAH-VARFHVLISAMLSSQTKDPINAAAMRRLLDN----ELTVESMIK--IKEDKLAQIIYPVSFYRNKAKSIKKVASILKERESEDGICDIPETVENLVALPGVGPKMAYLVMNVAWNKPVGICVDTHVHRICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCKDCALQSICPSASKN 316

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A6A3KHN9_9STRA (Endonuclease III homolog n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KHN9_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.390e-62
Identity = 120/238 (50.42%), Postives = 152/238 (63.87%), Query Frame = 1

Query:  274 WREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLA-EAE-DGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSAD 981
            WRE ++GI  MR ++DA VD  G     D S       RF VL++AM+SSQTKDPV AA + R+ +       G        +D+  L +L+ PV F   KAK+I    E L  +AE +GR    IP+T EGL+ LPGVGPKM+ LV++ AW    GICVDTHVHRISNRL WV TWN+N PK+QNPEKTR  L+ W+P+EHW  +N LLVGFGQ +C    P C+ C I G+CPSA+
Sbjct:   83 WREILKGIEEMRANKDAEVDKYGCEVFFDKSFPPH-VCRFHVLIAAMMSSQTKDPVNAAAMGRLIKH------GLTIESMLEIDQQELAQLIRPVGFFNHKAKYIKQTAEILTKQAEVEGRDIVDIPNTYEGLVALPGVGPKMSTLVLNCAWNNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPRCNECKIRGICPSAN 313

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A3F2RMS3_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMS3_9STRA)

HSP 1 Score: 223 bits (569), Expect = 2.590e-62
Identity = 122/250 (48.80%), Postives = 154/250 (61.60%), Query Frame = 1

Query:  229 KTTRTPIPTEPPQEKWREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSA 978
            K T+T +P + P   W+E + GI  MR S+DA VD  G     D         RF VL++AM+SSQTKDPV AA + R+        L   ++LA  +D+  L  L+ PV F   KAK+I      L +  +G     IP+T EGL+ LPGVGPKM  LVM+ AW    GICVDTHVHRI+NRL WV TWN+N PK+Q+PEKTR  L+ W+P+EHW  +N LLVGFGQ +C    P CS C I G+CPSA
Sbjct:   63 KKTKTRVPRKEPSG-WKELLRGIEEMRASKDAEVDKYGCEVFYDEKFPAHVR-RFHVLIAAMMSSQTKDPVNAAAMGRLINH----GLTMESMLA--IDQQELALLIRPVGFFNYKAKYIKQTVAILTKQAEGANIVDIPNTYEGLIALPGVGPKMATLVMNCAWDNTVGICVDTHVHRIANRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIQGICPSA 304

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A516AG77_LINPO (Endonuclease III-like protein 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG77_LINPO)

HSP 1 Score: 223 bits (568), Expect = 7.070e-62
Identity = 129/260 (49.62%), Postives = 162/260 (62.31%), Query Frame = 1

Query:  262 PQEKWREQMEGIRSMRRSRDAAVDFAGAGAL--RDSSAGG--EDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRN------RPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSADRHGDLALPPS 1011
            PQ  W+EQ+ GI +MRR+RDA VD++G  ++  R   +GG  E  +RF+ LM AMLSSQT+DPVT A + R+  A A     A   L   + E  L  LL PVSF   KAK++    E+L      R  G +P + +  LELPGVGPKM  L+M V WG+  GICVDTHVHRI+NRLGW  TW+        RP +Q PE+TR  L+ W+PRE W  +N LLVGFGQQ C A  P+CS C I GLCPSA   GD  +PP+
Sbjct:   69 PQPDWQEQLAGIIAMRRARDAPVDWSGTESIAARSGPSGGLQEQRMRFRALMGAMLSSQTRDPVTYAAVERLEVATARHGGLAPTSLLEALTEPDLAALLKPVSFAARKAKYLRGAAEQLL----ARHGGDVPRSADEFLELPGVGPKMMTLLMQVCWGQVVGICVDTHVHRIANRLGWARTWSHGASPRTGRPASQRPERTRVELERWLPRELWQPINPLLVGFGQQRCTALRPACSGCSIRGLCPSA---GD-GVPPA 320

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BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Match: A0A8K1C4U4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4U4_PYTOL)

HSP 1 Score: 221 bits (564), Expect = 1.690e-61
Identity = 117/238 (49.16%), Postives = 148/238 (62.18%), Query Frame = 1

Query:  268 EKWREQMEGIRSMRRSRDAAVDFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAE-AEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFATSPSCSACGISGLCPSA 978
            E W+  MEGI+ MR ++ A VD AG     D  A      RF+VL+SAMLSSQTKDPV AA + R+         G        +DE  L +++ PV F   KAK+I  V + L + A +  +   IP+T + L+ LPGVGPKM +L+M  AW    GICVDTHVHRISNRLGWV TWN   PK+Q+PEKTR  L+ W+PREHW+ +N LLVGFGQ +C    P C  C ++ LCPSA
Sbjct:   82 EHWQTVMEGIQEMRAAQVADVDVAGIEVFYDEEAYPPHIARFRVLISAMLSSQTKDPVNAAAMKRLTTH------GLTVQSMLEVDEAELAQIIRPVGFFNNKAKYIKQVAQILKDRAGEDNEVIDIPNTYDDLVALPGVGPKMAHLIMSCAWKTTVGICVDTHVHRISNRLGWVKTWNTKNPKSQDPEKTRLELEDWLPREHWNPINVLLVGFGQTICLPRGPKCDECKVAHLCPSA 313

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1185.1188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FTS9_ECTSI	3.850e-186	96.13	Endonuclease III homolog n=1 Tax=Ectocarpus silicu...	[more]
A0A5D6Y8M4_9STRA	1.400e-67	52.74	Endonuclease III homolog n=1 Tax=Pythium brassicum...	[more]
K3WGH9_GLOUD	3.120e-66	51.23	Endonuclease III homolog n=1 Tax=Globisporangium u...	[more]
H3G4Y0_PHYRM	5.540e-65	50.84	Endonuclease III homolog n=1 Tax=Phytophthora ramo...	[more]
A0A6H5L2I5_9PHAE	4.940e-64	94.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
F0X2C6_9STRA	5.350e-64	49.59	Endonuclease III homolog n=1 Tax=Albugo laibachii ...	[more]
A0A6A3KHN9_9STRA	2.390e-62	50.42	Endonuclease III homolog n=4 Tax=Phytophthora TaxI...	[more]
A0A3F2RMS3_9STRA	2.590e-62	48.80	Endonuclease III homolog n=2 Tax=Phytophthora kern...	[more]
A0A516AG77_LINPO	7.070e-62	49.62	Endonuclease III-like protein 1 (Fragment) n=1 Tax...	[more]
A0A8K1C4U4_PYTOL	1.690e-61	49.16	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1185	contig	E-siliculosus-1a_F_contig1185:20677..26964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	987
Model size	2865
Exons	8
Ec32 ortholog	Ec-14_000980.1
Ec32 ortholog description	HhH-GPD domain
Hectar predicted targeting category	chloroplast
BRITE	ko00000,ko00001,ko01000,ko03400
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	L
EC	4.2.99.18
EggNOG OGs	COG0177@1,KOG1921@2759
EggNOG free text desc.	oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GOs	GO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
KEGG Pathway	ko03410,map03410
KEGG ko	ko:K10773
Preferred name	NTH1
Seed eggNOG ortholog	2880.D7FTS9
Seed ortholog evalue	3.8e-155
Seed ortholog score	554.3
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1185.1188.1	prot_E-siliculosus-1a_F_contig1185.1188.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1185 20707..25116 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927703.02729-UTR-E-siliculosus-1a_F_contig1185:20676..20706	1622927703.02729-UTR-E-siliculosus-1a_F_contig1185:20676..20706	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1185 20677..20706 +
1696318645.411508-UTR-E-siliculosus-1a_F_contig1185:20676..20706	1696318645.411508-UTR-E-siliculosus-1a_F_contig1185:20676..20706	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1185 20677..20706 +
1622927703.1905777-UTR-E-siliculosus-1a_F_contig1185:25116..26964	1622927703.1905777-UTR-E-siliculosus-1a_F_contig1185:25116..26964	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1185 25117..26964 +
1696318645.513151-UTR-E-siliculosus-1a_F_contig1185:25116..26964	1696318645.513151-UTR-E-siliculosus-1a_F_contig1185:25116..26964	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1185 25117..26964 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1185:20677..26964+
coding sequence from alignment at E-siliculosus-1a_F_contig1185:20677..26964+

protein sequence of mRNA_E-siliculosus-1a_F_contig1185.1188.1

>prot_E-siliculosus-1a_F_contig1185.1188.1 ID=prot_E-siliculosus-1a_F_contig1185.1188.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=329bp
MGQARVSPVPLAMLVAAVVTAAVATMPRSGMAFSLRFPLRRRDCQNRPRP
SMMAANKNAPASPPIRKTTRTPIPTEPPQEKWREQMEGIRSMRRSRDAAV
DFAGAGALRDSSAGGEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACA
PAPLGAAALLATGMDEDALTELLHPVSFKKTKAKHILMVCERLAEAEDGR
QAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRL
GWVDTWNRNRPKAQNPEKTRKHLQGWMPREHWSEVNGLLVGFGQQVCFAT
SPSCSACGISGLCPSADRHGDLALPPSK*

mRNA from alignment at E-siliculosus-1a_F_contig1185:20677..26964+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1185.1188.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1188.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:20677..26964+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACAGATTAGCTCTCCTTCTCTTCTCCTCGATGGGCCAGGCTAGGGTGAG
CCCCGTCCCCTTGGCCATGTTAGTCGCTGCCGTTGTTACCGCTGCTGTTG
CTACGATGCCTCGAAGCGGTATGGCGTTTTCTCTTCGATTTCCTCTACGG
CGGCGGGACTGTCAGAATCGACCTCGACCCAGCATGATGGCCGCGAACAA
GAACGCGCCGGCTTCACCTCCTATTAGGTACCAGGTACTATGGGGTGAAC
CATGAGTGCGAGGGCCTGTGCCAACCTTCCCATCGTCACATATGTCAAGC
GTCGTGTTTTAGTCCGTGTTGACTCAGTCGAGCTACTGCTGTACACCCTT
CCAACCAGCAGTCACAGCCCAGGCACCGACTCCACCGATGTGTGCACGGC
GGTCCTATGAGGGCCTGCGGGTATGCGATGCATTTGACTGGGGAGCGAAA
GAATACATATTTATATCCTCGTGAGTCCGACCTGGTGGTTTATCATCCCT
GAATAGCTGGTGCACTCGAAGGATTCATCACAGCGCTCACATGTCAAGTT
GCAGTTACATAACGACACAGAGCAGCTTCCGTGGCCGACGCTATAGTCGA
ATAATACAGTAGACTTCGCTTGGTACAGCAGTGTTAGCAAATGGTATGTA
GTGGGGTGTGATTGTCGCTCACCCCTTACGCTGCATTAGACTGAGATTGT
GCAACAGAGTTAGGCAATTTGATCAAGCCCGGGTCGTTTCTACGTAATTA
ACGGGCCGTAGTACTTGCTGTATGTTGCGTACGCCGTCTTTGACTCCTCT
GAGACTACTGTCTGACAAGGGTGCTGACCGAGCATATTCACAGGAAAACC
TGTTGCGTGCTTGTTGCCCTCCGGTACGTCTTCTCTACCCTACGTATGCA
TGTACGCTTTCGCTACACAGAAAAACTACCAGAACTCCAATCCCCACAGA
ACCCCCCCAGGAGAAGTGGCGGGAGCAGATGGAGGGGATAAGATCCATGC
GGAGGTCGCGGGATGCGGCTGTTGATTTCGCGGGGGCAGGAGCTTTGAGA
GATTCCAGCGCGGGCGGTGAAGACGACGTGCGGTTCCAGGTAGGTCCCCG
AGTCACGAGTCCACTGCTGTTCCTACGGTTGTGCTCGTACCGATAGGATG
AGATCGTTGCTAGGTTTTGTTTTTCAGGGTTGGCTGATCTTCTTTGGTCT
TTGGCTTTGTCTTCGCCGCATTGTTGCATGTGAACCCCCTTGATCCTTCC
AACGTGTCCGATTGACGTCTAGGGGTCACTGTGATATTATAGTAGACACA
GCAGCTGATCATTGTTGTGCCCTCCAGGTTTTGATGTCTGCGATGCTCTC
CAGCCAGACGAAGGACCCCGTCACCGCGGCCGGCTTAAACCGGATGAGAC
AGGTGAACCAGCAGCAGTAGCCTAGCCGCTGCCACCTGAAGCGCTAGCCG
TCACTGCAGCGCGGTGAATCATACCTCGGGCGCGGGAGAGGGTGAGGGAC
AAGCTGTGTTCGTGTTTCGCGTTTATATCGGTGGAACTGACGAGGCACAG
GCACTTAAAGTACGAGTGCTGTTCGCTCCGAACTTTTGCGTCAAATTTGT
AGTATTACGGCCAGCCACCATCGGTGTAGCCTCTCACCCGCCAACACTTC
GCAGGCGTGCGCGCCAGCTCCCTTGGGAGCAGCCGCTCTTCTCGCAACTG
GCATGGACGAGGACGCGCTGACGGAGCTACTCCATCCCGTCAGTTTCAAG
AAGACCAAGGCGAGTGCTGCTTGATTAGGCCACCGTAAAACATGTGGTAG
GTAAGAGTCATCTTGCGATCGGCCTGTGGCGTCGTTCTCAGCCCTGTTTT
TTTTTTCATTTTTGCCATGATGCGGAATGTGGAGTGTTTTTTTGTTGGGA
AGGGGGAGGGGGGGGCGCGGTCGTTCGCCGTAGCAGACAAGTACATGTTC
GTAGGGGGACGTGGCGAAATCGTTGTAAAGCAACGGGGAGCCCTGGCGGC
CTGCCTGGCGTATGCCCTGCACCGTATGAATGCTCCCTGCGGCGGCCGAA
CAACGAGGGCACGTAGCCGGCAACACTTGAAAGTATCAAACCCCAACCGT
CGCCGGATCTGGTTTTGTCATTTTCTGCTGCGTTTTACAGCTTGCCCTGA
CCCCATGCCCCCCCTGCTCAGGCCAAGCATATCTTGATGGTGTGCGAACG
GTTAGCCGAGGCAGAGGATGGTCGGCAGGCTGGAGCCATCCCCGATACCG
TCGAAGGTGGGTGATGATACCTTTTGGCGGGCGCAAGGTGGTGATTGCAG
GCTTACGGCGAGGTAATTCCTGGATTTCCGGGGAGGTGAGTTCCGGCACT
GGGACACCTGAACTCAGGCCTTCAACATTTGTCCGGCCACGGTTGCGTGT
TGACGTCTTTTTCTGTGCCCGCCACCCTGGACCGTTGAACGCACGCAAGG
TCTGCTCGAACTCCCGGGGGTTGGGCCGAAGATGACGTATCTCGTCATGG
ACGTGGCCTGGGGACGGAACGAAGGGATCTGCGTCGACACCCACGTGCAC
AGGTAGGTACTAGCAAAGCGTCCGCGGAGGGGTGGCGCGAGCACCTGGTG
AACATCAATCCAGTTCGTTTGGCGAGGGGAAGTTTGTGTTGAAACGCTTT
TTCGTCGTTCTCACCTGACTTTTTTTTTTTTTCCTTTCGCCGGGGACTGG
GAAACCCCGATTTCTGCAAGCTGCTTGGGTTTGTGCTTGACGTACCGAGT
GGAGGAATTCGTAGTAGCAGGACGGGTATTTGCATTTTGGTCCGCGTGTG
CTTTGCCGAAGCACCACAGGTTCCGTCGATTGTTGTGGAAGGTTTCTCGG
TACGATCGCGTGTTTACTGGTGTTCCCGGAAATAGAAGTCTGAAAGGTCG
CCATGCTAGTCTGTGCCAACTCCACTTCCCCCGCCCTGTACTCACTTTGT
GGTGCATTCACTGTATGTTCATCTTTGAGCACGTCGTCTTCGAAAAACCC
GATTGACTACCCTTTACCACACGTTCTGGTGCCTGGGCGTAAAACGATTT
CAGCCTTGTCTACACCACCTTCAACAAACCGATCTGATAGAGAAGAATGA
CATGGTGTTGCGGTTGTCGGGGAACGCTGAAGGCGTTGCTTCGGATGTTG
TTGCGTGGATGTTCGAGTGGAGAATCCCTAAGCGCACCGTAGATCGTCGC
CCAGTCTGTTTTCCTCCCTCTTGTCCCTACGTCCTCGCAACATCTGTGGG
TGCGGACACTTTACGGCCTGGAGTCGACCAACGGGATAGTGCTCCTATTT
GCCGGCCTGTTTACCTGGCAGAGGATATTTCTTTCGACTACGAAACCAAG
TGTCCATACACCTACACCAGTAGCCTGCTTGCCCCGCTCTGCTTGTCCCG
CTCTGCTAACCCCGCTCTGCTTGCCCCGCTCTGCTTGCCCCGCTCTGCTT
GCCCCGCTCTGCTTTCCCCGCTCTGCTTGCCCCGCTCTGCTTGCCCCGCT
CTGCTTGCCGGAAAACGGTACCTCTTCCTCGCGTAGGATTAGCAACCGTC
TCGGGTGGGTAGACACGTGGAACAGGAACAGACCCAAGGCCCAGAACCCG
GAGAAAACAAGGAAACACCTGCAGGGGTGGATGCCTCGCGAGCACTGGTG
AGAATGCGGGACTCTGCTCTGTGTGCTTGTTCAACTCATGGTTACTGCGG
CAAATGCACGCGCTTAGCTTATCACTTGTGTGTGCGCCGTTCATCGTCAG
CTAGATCCTGTGCAGGCGTTGGGTGCATGGGGTAGTAGGTGGAGAAGGGC
GTGAACGCGGCCTTCAATGTGCTCGATGTTACGGATTTGATACGGTTTTG
TAATATGGTGCTGCCTTGCTCGTAATGCGTAGACTAATACTTTTGCGCCC
GAAGCCATGTGTCGAGCACTCTTCGACGCGAACTAACTTCGTTCGAGGAG
ATATAAATGCGTCGTCGACTTCGGCTTTCCACCTTTTTCAGCCCAGGGTA
CTGTCAGGAAGACTGCTGCTGCTGTTTTAGCACCCACAACCACCCAAAAT
TCCAAATTTCAGAAAAAACGGGGGCTTTGGTCTTACGTGCTCCTTCTCTC
TCGCTCCACCTCGTTGTCTGTTCTAGAAACCTCGTGTCAGCGTATTAAGG
AGATTCGATGCACTGACACCGTTTATATAGGAGCATGTTCTGTCTCGTGA
AATCGGCTGCTTTGTTTCGAGCCGTCACCCTCTTCTTGCTCCACCCGCAC
CTCTATATTCTTCACCAACCTGTTCGCGTAATGTGTGCCAATACTAAGGT
CGGAGGTCAACGGGCTATTGGTGGGATTCGGGCAGCAGGTCTGCTTCGCG
ACGAGTCCGTCGTGTTCTGCTTGTGGCATCAGCGGCCTTTGTCCCTCGGC
AGACAGACATGGCGACCTTGCTCTACCGCCAAGCAAGTGACGTATTGAGT
AACGTATGAGAGTACGTTGTCCGTTGCAGCTTTGAACTGCTTTGTTTGGT
GTAGAGTCGCCATGGCAGTAGCGCGGAGAGACTGCGGAGCAGACCCTCGA
CCGAGCTGGGAACGCGGCAGCGTAAGCCATGCTGTTTTTTTTGGTAACCT
ATGTTAAGTTTTTTATCGTGACTGCTTCGTTCTGTTTGGCAGGACGAATA
TCCTGATGCTTTAAATCGGTAGGCATTACGGCGTGCTATGCACAGTTTTG
CAGCGTGTTTGAGGATTTGTCTTAAGCGAAAGGTCTTTCTCGTCTGGTCC
TCGCCGAAGGACACAGAAAGAGTAATGCATGCCGCTTGGCGCCGCCGCCG
TGGCACAGGCGTCAGTACCGAACGATATTGCCGTTGAAGATGTGCTACTC
ACGACATTATTTCCGCACACGTCTTGTTTTTGATCGATGATTCTGGGCAT
TTAACTGATTGACTTTGCGGCATTGTAGTGCGGCTAGACTACAGCAGTCT
ATCATCTCATGTCCAGCTCGAGCAAGAAAGACCAGAATTCGGGCAGCATG
AGTACAGCAGTGTAGACCCAGATGCGGTAGGCTCGTGGATTTGCCGGACA
CGTACGAGGAGGTGGATTGGCAGTACCATCATCGCAGGTGGATATAGTTT
TCGAACGGGAGGTGCGGCGCATGAGCGGCAAATGACAACGATTGGGTGGC
TCTTGGACCCTCGCCGGGTGTTGTTAGCCCATGGGTGGCCTTTGGGCGGT
CCATGGGCGGTCGATGACCCATGGTGACCCAAGAACGGCCCATGAGCGGC
TATTTCGACCCTTGACGAGACTCATTCCAGCTGCCGTTGGGCGACGTGGG
TCGTTGGTGGATTGATTGATGGGCCATTTTGGTACTTGCTGACTGGATCA
ACAACCACCCGTTGAGGCGTCCAAGCGGGAGATCAGCCCGGGCAGGTGGC
GTGCAGTTGGGATCTTACGCAGATACGGAACGAGAGACTGAGAGAGATGA
GACCAGCTACAGCAGTAGACCACAAGAAGACCGGAAAGACCGGGCAGCCA
GGTCGAAGGGTCGAAGAGATCGGGCCATCGAGAGCTACAGCAGCAGATGT
TCTCCTGCGGCGGCTACCTACGAAATGCTAGTCGTGTTGCGGGCTATCCG
CATAATAAGTGTTGTCATTGTCACTTGCTATCGTTTCAACGGCGACGATT
GCTTAGCGTTTCTTGTCGTTTTGTCGAGAAGGACGGTTGGTTCTCGTCGT
TCCCGACGGTGTTTTTCTTGCGTTTTATTCTTTTCTCTAGGTTCCGACAC
CTGTTCTTGTTGTTATGGTAATTAAGGCGTTGACGCGGCTCTTGTGCTAT
TTTCTGTTTTTTTTTCTCTGTGTTCGTTCGTAGCCCCCGTATTCCCTAGT
CTATCTACCTTTTCATAGTTGGGTCAAACGATGGTCTTGCGACTCATCGT
GTGAGAGGTGTGGGATGGTGAATTTTGGTATGTTGGGAGCTGTAGCTCCG
CATCCTCGATCCTTGCATTCTAGGATTCGACAAATGGGTTGCCAAATCCG
AGATTTCAAGTACTGCGTATGTATGCATGTGTGTGGATGAGATCCTCCAG
GGTGGGCTGAAGTAGTGTTGCGGGATTTGAGTTTAGCAAGTATAAACGGT
TTTGCGGAGTAATTCCCTTTGAGGAAAGTGCGGGAAATCGATGTAACTCC
TGATTGAAGATAAAAGAGGGGAGAGGACCTTGGTGGCCCCGTGTAGAGGG
ACCATGTCCTCCCCGTCTGTGCGCATCAGTCTTTGAGCGCAAACCAACAG
CAAGCACTGCTGTTCCAAGAGATGAATTAATAAACGAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1185:20677..26964+

>mRNA_E-siliculosus-1a_F_contig1185.1188.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1188.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:20677..26964+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCAGGCTAGGGTGAGCCCCGTCCCCTTGGCCATGTTAGTCGCTGC
CGTTGTTACCGCTGCTGTTGCTACGATGCCTCGAAGCGGTATGGCGTTTT
CTCTTCGATTTCCTCTACGGCGGCGGGACTGTCAGAATCGACCTCGACCC
AGCATGATGGCCGCGAACAAGAACGCGCCGGCTTCACCTCCTATTAGATG
GGCCAGGCTAGGGTGAGCCCCGTCCCCTTGGCCATGTTAGTCGCTGCCGT
TGTTACCGCTGCTGTTGCTACGATGCCTCGAAGCGGTATGGCGTTTTCTC
TTCGATTTCCTCTACGGCGGCGGGACTGTCAGAATCGACCTCGACCCAGC
ATGATGGCCGCGAACAAGAACGCGCCGGCTTCACCTCCTATTAGAAAAAC
TACCAGAACTCCAATCCCCACAGAACCCCCCCAGGAGAAGTGGCGGGAGC
AGATGGAGGGGATAAGATCCATGCGGAGGTCGCGGGATGCGGCTGTTGAT
TTCGCGGGGGCAGGAGCTTTGAGAGATTCCAGCGCGGGCGGTGAAGACGA
CGTGCGGTTCCAGAAAAACTACCAGAACTCCAATCCCCACAGAACCCCCC
CAGGAGAAGTGGCGGGAGCAGATGGAGGGGATAAGATCCATGCGGAGGTC
GCGGGATGCGGCTGTTGATTTCGCGGGGGCAGGAGCTTTGAGAGATTCCA
GCGCGGGCGGTGAAGACGACGTGCGGTTCCAGGTTTTGATGTCTGCGATG
CTCTCCAGCCAGACGAAGGACCCCGTCACCGCGGCCGGCTTAAACCGGAT
GAGACAGGTTTTGATGTCTGCGATGCTCTCCAGCCAGACGAAGGACCCCG
TCACCGCGGCCGGCTTAAACCGGATGAGACAGGCGTGCGCGCCAGCTCCC
TTGGGAGCAGCCGCTCTTCTCGCAACTGGCATGGACGAGGACGCGCTGAC
GGAGCTACTCCATCCCGTCAGTTTCAAGAAGACCAAGGCGTGCGCGCCAG
CTCCCTTGGGAGCAGCCGCTCTTCTCGCAACTGGCATGGACGAGGACGCG
CTGACGGAGCTACTCCATCCCGTCAGTTTCAAGAAGACCAAGGCCAAGCA
TATCTTGATGGTGTGCGAACGGTTAGCCGAGGCAGAGGATGGTCGGCAGG
CTGGAGCCATCCCCGATACCGTCGAAGGCCAAGCATATCTTGATGGTGTG
CGAACGGTTAGCCGAGGCAGAGGATGGTCGGCAGGCTGGAGCCATCCCCG
ATACCGTCGAAGGTCTGCTCGAACTCCCGGGGGTTGGGCCGAAGATGACG
TATCTCGTCATGGACGTGGCCTGGGGACGGAACGAAGGGATCTGCGTCGA
CACCCACGTGCACAGGTCTGCTCGAACTCCCGGGGGTTGGGCCGAAGATG
ACGTATCTCGTCATGGACGTGGCCTGGGGACGGAACGAAGGGATCTGCGT
CGACACCCACGTGCACAGGATTAGCAACCGTCTCGGGTGGGTAGACACGT
GGAACAGGAACAGACCCAAGGCCCAGAACCCGGAGAAAACAAGGAAACAC
CTGCAGGGGTGGATGCCTCGCGAGCACTGGATTAGCAACCGTCTCGGGTG
GGTAGACACGTGGAACAGGAACAGACCCAAGGCCCAGAACCCGGAGAAAA
CAAGGAAACACCTGCAGGGGTGGATGCCTCGCGAGCACTGGTCGGAGGTC
AACGGGCTATTGGTGGGATTCGGGCAGCAGGTCTGCTTCGCGACGAGTCC
GTCGTGTTCTGCTTGTGGCATCAGCGGCCTTTGTCCCTCGGCAGACAGAC
ATGGCGACCTTGCTCTACCGCCAAGCAAGTGAGTCGGAGGTCAACGGGCT
ATTGGTGGGATTCGGGCAGCAGGTCTGCTTCGCGACGAGTCCGTCGTGTT
CTGCTTGTGGCATCAGCGGCCTTTGTCCCTCGGCAGACAGACATGGCGAC
CTTGCTCTACCGCCAAGCAAGTGA