mRNA_E-siliculosus-1a_F_contig1185.1186.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1186.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 2107 bits (5459), Expect = 0.000e+0 Identity = 1302/1556 (83.68%), Postives = 1334/1556 (85.73%), Query Frame = 1
Query: 145 DTLILHLSGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRASRRALLLRLEKEHGVKIFIVGPAAMATVDVDGGGTDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VAVDVTVCGLPKEIEAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVFLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRAGGGVMMTILEEAKTKAAAAAPTLPAASLSEGEGEEVDEARH-PXXXXXXXXXXXQSMTSFVWVRGTAPRVSAAGVLLLERLKAAERLTAKVAVREDIVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQVRMVAVGSKIAGMLRTFRAAGVRDRITGANRRQKGSGTSXXXXXXXXXXNS--NDGGRARGDAGEGGDADGLFGGVIMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLLRKGFLRNMQANQTDVNLHYLRDRGVVVVRGRQEHAESAAALLLSKLHGGGELDENGMHPCSVSLVAVAPSGMDVLTARGRLYLKRLSADTGTEMHVIPAASVVRIRARGRDAEAVAEAKRALLRFVGGHRAEVFLDLAKVVSDASPPAQRXXXXXXXXXSEGKAGAEAMEEVVSGRGXXXXXXXXXX--VGASAADATKAVRTPVSSVSNKIIRRTVKLHGCEAEFVAAPPPSPPVSSNAASGGRXXXXXXXXXXXXXXXXX-----ERHRHGPHKSGPGRQDAGGRGAGVGATTTANDAHDDGSLSAATGVSYTSSAPARRVMIRGPPGLVDKARDALVALVLGREDCEVALGEETAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPTAVEACRRELYTMIADAFPGEFVAVPIPREALHEVATSLRLADAAXXXXXXXXXXXXXXXXXXXXXAAARQIVEVLWPMGVAAAACGWRGEGNVQLLADWPCSCIRVRGEAAAVSVAVDEINTALSKWSALAVTAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSRLTGRRGCSIDKLKERTRAAICIEEGVGGKEVIICGDPAAVAAAKLEVEAMARGPSNSGPAAQAPKDRQSQDDSVPDATGDPSPLPSSPPDEGVPQTGTPSPXXXXXXXXDQQHAGNAAGGGGQDVDLADRRGCEATTGSVKAAVAVAKQDGEGYRRGVEDQERVAEEQPPVVTPPGGSGDARQAPGPSASGSTGRPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGSFETKSRDNPWGGGGPSGVAAEPAGSPPPAVVSGTNHYPAKGSSASSHRGRLGERDTRVSAATEAEAERLLASLLLVDNEEADLGPSSGRSHFSPRRREGAAATTGVGAGLRQPXXXXXXXXXXXX---HRATPAXXXXXXXHGVGPATPACNGSPPPSLQPVGGGVAPACGGGYFTSSSGIRVRL 4752
DTLILHLSGTREGVEEARRRLD+TIRTTEAVVKASP LAAALRASRRALLLRLEKEHGVKIFIVGPAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAVDVTVCGLPK I+AARAELEGLDCLELAVPVTRK+LPSIFGSGGANLQQMESEYGV LDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHR GGGVMMTILE AKTK AAAPTLPAA+L EGEGE+VDEA H P QS TSFVWVRG APRVSAAGVLLLERLKAAE LTAKVAVREDIVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQVRMVAVGSKIAGMLRTFRAAGVRDRITGANRRQKGSGTSXXXXXXXXXX NDGGRARGDAGEGGD D LFGGVIMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVL RKGFLR MQAN+TDVNLHYLRDRGVVVVRGRQEHAESAAA LL KLHGGGELDENGM PCSVSLVAVAPSGM+VLTARGRL+LKRLSADTGTEMHVIPAASVVRIRARGRDA V+EAKRALLRF+GGHRAEVFLDLAKVVSDASPPAQ XXXX XXXXXX VGASAADA KAVRTPVSSVSNKIIRRTVKLHGCE EFVAAPPPSP XXXXXXXXXXXXXXXXX ERHR+GP+KSGPGRQDAGGRGAGVGA TTA+DAHDDGSLSA TGVSYTSSAPAR VMIRG PG VDKARDALVALVLG ED EVALGEE AAALGADSWRKIQDSS RVTITPD+SRCSLRVSGPP AVEACR+ELYTM+ADA G+FVAVPIPREALHEVATSLRLADAAXXXXXXXX AAA QI EVL P G+A+AACGWRGEGNVQLLADWPCSC+RVRGEAAAVSVAVDEINTALS WSAL VTAEVEEWMEPEL GKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVS+LTGRRGCSIDKLKERTRA ICIEEGVGGKE IICGDPAAVAAAKLEVEAMARGPS SGPA QAP +RQSQD SVPDA GDPSPL S P EGVPQTGTPSP +QQHAGN AGGGGQDVDLADRR C+AT GSVK AVAV K DGEGYRRGVEDQERV EEQP VVTPPGG GDARQAPGPSASGSTGRPLG XXXXXXXXXXXXXXXXXXX G+ FET +RDNP GG P+GVAAEPAGSP PAVVS +NHYPAKGSSASS+RGRLGERD RVSAATE+EAERLLASLLLVDN AD+GP +S SP REGAAATTGVGAGLRQP HRATPA G GPATPACNGSPPPSLQPVGGGVAPACGGGYFTSSSGIRVRL
Sbjct: 207 DTLILHLSGTREGVEEARRRLDVTIRTTEAVVKASPALAAALRASRRALLLRLEKEHGVKIFIVGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQVAVDVTVCGLPKGIDAARAELEGLDCLELAVPVTRKALPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEGAKTKGPAAAPTLPAAALLEGEGEDVDEAPHSPEEEVKEGRGGSQSTTSFVWVRGAAPRVSAAGVLLLERLKAAEHLTAKVAVREDIVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQVRMVAVGSKIAGMLRTFRAAGVRDRITGANRRQKGSGTSXXXXXXXXXXXXXXNDGGRARGDAGEGGDPDDLFGGVIMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLFRKGFLRKMQANETDVNLHYLRDRGVVVVRGRQEHAESAAASLLWKLHGGGELDENGMPPCSVSLVAVAPSGMEVLTARGRLHLKRLSADTGTEMHVIPAASVVRIRARGRDAGVVSEAKRALLRFLGGHRAEVFLDLAKVVSDASPPAQHSSSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRDGGVGASAADAKKAVRTPVSSVSNKIIRRTVKLHGCEVEFVAAPPPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAERHRNGPYKSGPGRQDAGGRGAGVGAITTADDAHDDGSLSAVTGVSYTSSAPARMVMIRGLPGQVDKARDALVALVLGWEDGEVALGEEGAAALGADSWRKIQDSSGRVTITPDKSRCSLRVSGPPAAVEACRKELYTMLADASRGKFVAVPIPREALHEVATSLRLADAAXXXXXXXXSSPKTGDGKRTA-AAAGQIAEVLGPTGIASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEINTALSMWSALTVTAEVEEWMEPELLGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSQLTGRRGCSIDKLKERTRATICIEEGVGGKEFIICGDPAAVAAAKLEVEAMARGPSKSGPATQAPNNRQSQDGSVPDAAGDPSPLLSPSPGEGVPQTGTPSPLPPSRQNQNQQHAGNTAGGGGQDVDLADRRECDATAGSVKTAVAVPKLDGEGYRRGVEDQERVGEEQPLVVTPPGGGGDARQAPGPSASGSTGRPLGARDASXXXXXXXXXXXXXXXXXXXA--------GSEGFETNARDNPRSGGDPAGVAAEPAGSPAPAVVSSSNHYPAKGSSASSYRGRLGERDRRVSAATESEAERLLASLLLVDNAAADVGPPMDQSRLSPGHREGAAATTGVGAGLRQPPPLPSPFSVSGDTGGHRATPATTAAGGSLGRGPATPACNGSPPPSLQPVGGGVAPACGGGYFTSSSGIRVRL 1753
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1186.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI) HSP 1 Score: 1238 bits (3203), Expect = 0.000e+0 Identity = 766/981 (78.08%), Postives = 785/981 (80.02%), Query Frame = 1
Query: 1558 IMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLLRKGFLRNMQANQTDVNLHYLRDRGVVVVRGRQEHAESAAALLLSKLHGGGELDENGMHPCSVSLVAVAPSGMDVLTARGRLYLKRLSADTGTEMHVIPAASVVRIRARGRDAEAVAEAKRALLRFVGGHRAEVFLDLAKVVSDASPPAQRXXXXXXXXXSE--GKAGAEAMEEVVSGRGXXXXXXXXXX-VGASAADATKAVRTPVSSVSNKIIRRTVKLHGCEAEFVAAPPPSPPVSSNAASGGRXXXXXXXXXXXXXXXXXERHRHGPHKSGPGRQDAGGRGAGVGATTTANDAHDDGSLSAATGVSYTSSAPARRVMIRGPPGLVDKARDALVALVLGREDCEVALGEETAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPTAVEACRRELYTMIADAFPGEFVAVPIPREALHEVATSLRLADAAXXXXXXXXXXXXXXXXXXXXXAAARQIVEVLWPMGVAAAACGWRGEGNVQLLADWPCSCIRVRGEAAAVSVAVDEINTALSKWSALAVTAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSRLTGRRGCSIDKLKERTRAAICIEEGVGGKEVIICGDPAAVAAAKLEVEAMARGPSNSGPAAQAPKDRQSQDDSVPDATGDPSPLPSSPPDEGVPQTGTPSPXXXXXXXXDQQHAGNAAGGGGQDVDLADRRGCEATTGSVKAAVAVAKQDGEGYRRGVEDQERVAEEQPPVVTPPGGSGDARQAPGPSASGSTGRPLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNGSFETKSRDNPWGGGGPSGVAAEPAGSPPPAVVSGTNHYPAKGSSASSHRGRLGERDTRVSAATEAEAERLLASLLLVDNEEADLGPSSGRSHFSPR 4491
+MDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLLRKGFLRNMQANQTDVNLH+LRDRGVVVVRGRQ+HAESAA LLLSKLHGGGELDENGM PCSVSLVAVAPSGM+VLTARGRL+LKRLSADTGTEMHVIP ASVVRIRARGRD EAVAEA RALLRFVGGHRAEVFLDLAKV SDASPPA XXXXXXXXX GKAGAEAM+EVV XXXXX VGASAADA KAVRTPVSSVSNKIIRRTVKLHGCEAEFVAAPPPSPPVSSN ASGGRXXXXXXXXXXXXXXXXX RHRHGPHKSGPGRQDAGGRGAGVGATTTA+D HDDGSLSA TGVSYTSSAPARRVMIRG PGLVDKARDALVALVLGRED EVALGEE AAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPP AVEACRRELYTM+ADAF GEFVAVPIPREALHEVAT LRLADAA XXXXXXX AAA QI EVL PMGVAAAACGWRGEGNVQLLADWPCSC+RVRGEAAAVSVAV EINTALSKWSALAV AEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVC GRAASEEEARDATRKLEERV+ELRARRAVVRVPPEVV+RLTGR GCSIDK+KERTRA I I EGVGG EVIICGDP+AVAAA+ EVEAMARGPS S PAAQAPKDRQS D VPDA GDPSPL P EGVPQTGTPS XXXXXX +Q HAGNAAGGGGQDVDLADRRG EAT GSVK A EPAGSPPPAVV G+NH PAKGSSASS+RGRLGERDTRVSAATE+EAERLLASLLLVDN AD+G SGRSHFS R
Sbjct: 1 MMDSLVAEGMVRLRGGDEELDRAERLVREFEADNWTTEAPVAISDEDVLLRKGFLRNMQANQTDVNLHFLRDRGVVVVRGRQKHAESAATLLLSKLHGGGELDENGMPPCSVSLVAVAPSGMEVLTARGRLHLKRLSADTGTEMHVIPPASVVRIRARGRDPEAVAEATRALLRFVGGHRAEVFLDLAKVESDASPPAXXXXXXXXXXXXXXXGKAGAEAMQEVVXXXXXXXXXVGRDGGVGASAADAKKAVRTPVSSVSNKIIRRTVKLHGCEAEFVAAPPPSPPVSSNTASGGRXXXXXXXXXXXXXXXXXXRHRHGPHKSGPGRQDAGGRGAGVGATTTADDTHDDGSLSAVTGVSYTSSAPARRVMIRGLPGLVDKARDALVALVLGREDGEVALGEEAAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALHEVATPLRLADAAAXXXXXXXSSPRTGDGKRTA-AAAGQIAEVLGPMGVAAAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVGEINTALSKWSALAVAAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCSGRAASEEEARDATRKLEERVSELRARRAVVRVPPEVVTRLTGRGGCSIDKIKERTRATIRIGEGVGGNEVIICGDPSAVAAARREVEAMARGPSKSSPAAQAPKDRQSPDGGVPDAAGDPSPLLPPSPGEGVPQTGTPSXXXXXXXNQNQLHAGNAAGGGGQDVDLADRRGGEATAGSVKTA----------------------------------------------------------------------------------------------------------------EPAGSPPPAVVGGSNH-PAKGSSASSYRGRLGERDTRVSAATESEAERLLASLLLVDNVAADVGRLSGRSHFSRR 867
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1186.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI) HSP 1 Score: 578 bits (1490), Expect = 4.610e-187 Identity = 361/397 (90.93%), Postives = 369/397 (92.95%), Query Frame = 1
Query: 160 HLSGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRASRRALLLRLEKEHGVKIFIVGPAAMATVDVDGGGTDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVDVTVCGLPKEIEAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVFLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRAGGGVMMTILEEAKTKAAAAAPTLPAASLSEGEGEEVDEARHPXXXXXXXXXXX----QSMTSFVWVRGTAPRVSAAGVLLLERLKAAERLTAKVAVREDIVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQV 1338
++SGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRAS+RALLLRLEKEHGVKIFIVGPAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAVDVTVCGLPKEI+AARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGV LDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHR GGGVMMTILEEA TKA AAAPTLPAASLSEGEGEE++EARHP XXXXXXXXXX QS TSFVWVRGTAPRVSAAGVLLLERLKAAERLTAKVAVRED+VSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQ+
Sbjct: 176 NVSGTREGVEEARRRLDITIRTTEAVVKASPPLAAALRASKRALLLRLEKEHGVKIFIVGPAAAXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGQVAVDVTVCGLPKEIDAARAELEGLDCLELAVPVTRKSLPSIFGSGGANLQQMESEYGVCLDVQTGVSRVVLMGVRAGVEAAAEKIRAISHEFRDTEERWPVEPYQVSFLLRNRGAELKGMAHRVGGGVMMTILEEANTKAPAAAPTLPAASLSEGEGEEINEARHPPXXXXXXXXXXXXXXQSTTSFVWVRGTAPRVSAAGVLLLERLKAAERLTAKVAVREDVVSTFVGHAGSEIRKLRRLCVGCDLGLSPATDGVAEVLLLADDEARLAAAVGLVEKWVHHQQI 569
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1186.1 vs. uniprot
Match: D8LHP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP8_ECTSI) HSP 1 Score: 105 bits (261), Expect = 6.720e-19 Identity = 86/277 (31.05%), Postives = 129/277 (46.57%), Query Frame = 1
Query: 2653 VMIRGPPGLVDKARDALVALVLGREDCEVALGEETAAALGADSWRKIQD--SSERVTITPDRSRCSLRVSGPPTAVEACRRELYTMIADAFPGEFVAVPIPREALHEVATSLRLADAAXXXXXXXXXXXXXXXXXXXXXAAARQIVEVLWPMGVAAAACGWRGEGNVQLLADWPCSCIRVRGEAAAVSVAVDEINTALSKWSALAVTAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVD-GVCCGRAASEEEARDATR--KLEERVNELRARRA 3468
++I GP G+V +A+DA+ +LV G EV +G W + ++ D R + V G P VE R+E +A FPG+F+AVP+PR AL ++A + L AA P G A G V+L ADWP SC+R+RGE A V A + AL+ W+ L V+ V+ + L + + + +S +MG +L + GV GRA +E+EA++A R KL+ +V L RR+
Sbjct: 305 ILIWGPAGVVGEAKDAVCSLVSGSASAEVVVGVGRIGRRDRGFWVNCETMPGGGGASLEVDHKRGVVVVRGLPEEVEEGRKEFQDKLASLFPGDFLAVPMPRAALKDLADAQGLTRAASQAGVVDGRDER--------------------PDGCDEA-------GGVELWADWPFSCVRLRGEPATVRRAAKALYAALAVWNTLEVSVTVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARNEDEAKEANRVLKLKLKVAALAQRRS 554 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1185.1186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1185.1186.1 >prot_E-siliculosus-1a_F_contig1185.1186.1 ID=prot_E-siliculosus-1a_F_contig1185.1186.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1585bp RIESVGPQRQPGSGPTNPTTALPGGSGSSGSTNRGGSSNSGGGGGGGGDTback to top mRNA from alignment at E-siliculosus-1a_F_contig1185:750..12857+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1185.1186.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1186.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=12108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:750..12857+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1185:750..12857+ >mRNA_E-siliculosus-1a_F_contig1185.1186.1 ID=mRNA_E-siliculosus-1a_F_contig1185.1186.1|Name=mRNA_E-siliculosus-1a_F_contig1185.1186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=9510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1185:750..12857+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |